Wall clock time and date at job start Tue Mar 31 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47269 * 311.18292 * 3 2 1 5 5 H 1.09007 * 109.47377 * 305.00228 * 4 3 2 6 6 C 1.53001 * 109.47256 * 185.00425 * 4 3 2 7 7 C 1.52995 * 109.47326 * 65.00216 * 6 4 3 8 8 H 1.09006 * 109.46909 * 305.00071 * 7 6 4 9 9 C 1.50705 * 109.47296 * 64.99792 * 7 6 4 10 10 H 1.07994 * 119.99793 * 240.00152 * 9 7 6 11 11 C 1.37873 * 119.99490 * 60.00234 * 9 7 6 12 12 N 1.31512 * 120.00260 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 119.99661 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47031 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46830 * 120.00154 * 13 11 9 16 16 H 1.48500 * 109.47176 * 239.99925 * 13 11 9 17 17 C 1.50698 * 109.47413 * 185.00189 * 7 6 4 18 18 O 1.21252 * 119.99677 * 334.99865 * 17 7 6 19 19 C 1.47166 * 120.00411 * 154.99930 * 17 7 6 20 20 C 1.39847 * 120.17203 * 180.02562 * 19 17 7 21 21 C 1.37886 * 119.82116 * 179.97438 * 20 19 17 22 22 C 1.38406 * 120.17708 * 359.97438 * 21 20 19 23 23 C 1.38403 * 120.34455 * 0.28152 * 22 21 20 24 24 C 1.37892 * 120.17250 * 359.47904 * 23 22 21 25 25 C 1.50704 * 109.47053 * 65.00343 * 4 3 2 26 26 O 1.21247 * 119.99754 * 95.00046 * 25 4 3 27 27 C 1.47163 * 119.99926 * 275.00158 * 25 4 3 28 28 C 1.39855 * 120.17289 * 359.71684 * 27 25 4 29 29 C 1.37889 * 119.82574 * 179.80740 * 28 27 25 30 30 C 1.38406 * 120.17087 * 0.45390 * 29 28 27 31 31 C 1.38408 * 120.34582 * 359.78296 * 30 29 28 32 32 C 1.37881 * 120.17243 * 359.97438 * 31 30 29 33 33 H 1.09007 * 109.46996 * 191.18424 * 3 2 1 34 34 H 1.09000 * 109.47323 * 71.18874 * 3 2 1 35 35 H 1.08995 * 109.47026 * 304.99812 * 6 4 3 36 36 H 1.09003 * 109.46978 * 185.00225 * 6 4 3 37 37 H 0.97007 * 119.99879 * 180.02562 * 12 11 9 38 38 H 1.07992 * 120.09103 * 359.94867 * 20 19 17 39 39 H 1.08001 * 119.91179 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.82516 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.91196 * 179.72500 * 23 22 21 42 42 H 1.07999 * 120.08484 * 180.23018 * 24 23 22 43 43 H 1.08002 * 120.08756 * 0.02869 * 28 27 25 44 44 H 1.08003 * 119.91571 * 180.20858 * 29 28 27 45 45 H 1.08002 * 119.82352 * 179.75758 * 30 29 28 46 46 H 1.07998 * 119.90816 * 179.97438 * 31 30 29 47 47 H 1.08009 * 120.08222 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.9489 1.0856 5 1 2.6837 -0.6705 2.0457 6 6 4.6432 -0.8547 1.1698 7 6 5.0427 0.5463 1.6372 8 1 4.5970 1.2903 0.9769 9 6 4.5513 0.7654 3.0449 10 1 3.8619 1.5691 3.2572 11 6 4.9820 -0.0603 4.0616 12 7 5.8218 -1.0387 3.8031 13 14 4.3735 0.2118 5.8067 14 1 3.4436 1.3692 5.8319 15 1 3.6628 -1.0039 6.2783 16 1 5.5299 0.4857 6.6972 17 6 6.5434 0.6786 1.6026 18 8 7.2412 -0.3091 1.6912 19 6 7.1621 2.0064 1.4614 20 6 8.5544 2.1331 1.4284 21 6 9.1264 3.3807 1.2954 22 6 8.3265 4.5056 1.1941 23 6 6.9479 4.3889 1.2312 24 6 6.3606 3.1478 1.3589 25 6 2.7205 -2.3619 0.7447 26 8 3.4952 -3.0844 0.1549 27 6 1.3915 -2.8648 1.1277 28 6 0.4973 -2.0364 1.8134 29 6 -0.7476 -2.5137 2.1653 30 6 -1.1095 -3.8119 1.8500 31 6 -0.2283 -4.6394 1.1759 32 6 1.0182 -4.1752 0.8128 33 1 2.9709 1.0090 0.1993 34 1 2.9715 -0.3305 -0.9728 35 1 5.0739 -1.0465 0.1871 36 1 5.0142 -1.5941 1.8797 37 1 6.1245 -1.6198 4.5184 38 1 9.1800 1.2564 1.5074 39 1 10.2015 3.4803 1.2701 40 1 8.7805 5.4801 1.0905 41 1 6.3304 5.2718 1.1561 42 1 5.2846 3.0580 1.3840 43 1 0.7797 -1.0244 2.0634 44 1 -1.4406 -1.8741 2.6918 45 1 -2.0846 -4.1811 2.1318 46 1 -0.5179 -5.6512 0.9338 47 1 1.7049 -4.8223 0.2872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002271862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:49 Heat of formation + Delta-G solvation = -6.444397 kcal Electronic energy + Delta-G solvation = -31807.830323 eV Core-core repulsion = 27692.349548 eV Total energy + Delta-G solvation = -4115.480775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.41532 -40.50949 -39.24573 -38.68835 -37.85643 -36.27638 -34.33995 -32.57610 -32.15351 -31.91631 -31.64739 -30.78899 -27.97951 -26.39526 -25.53645 -24.11001 -23.50830 -23.08511 -21.99961 -20.48742 -20.25717 -18.70009 -18.41076 -18.17046 -17.49711 -16.93237 -16.72622 -16.58693 -16.17256 -16.06285 -15.85279 -15.43779 -15.26914 -15.06798 -14.93956 -14.67785 -14.57696 -14.37950 -14.28252 -14.14293 -14.01342 -13.77047 -13.59493 -13.13420 -13.12839 -12.85755 -12.80206 -12.69599 -12.55817 -12.33529 -12.32944 -12.12451 -11.94706 -11.82114 -11.63263 -11.26133 -11.04440 -10.52540 -10.44428 -9.97397 -9.93325 -9.76514 -9.72927 -9.62408 -7.96234 -6.16330 -0.32413 0.13418 0.39595 0.63916 1.40948 1.41941 1.47973 1.54009 1.84983 1.89219 2.13891 2.47410 2.83476 3.01097 3.08650 3.15058 3.31606 3.77905 3.81371 3.97228 4.08320 4.13045 4.14274 4.20070 4.25685 4.33413 4.38406 4.43367 4.47335 4.66702 4.72726 4.77049 4.79368 4.89505 4.90998 5.00757 5.05521 5.11829 5.22885 5.33599 5.36010 5.40665 5.43828 5.45872 5.50220 5.66619 5.68463 5.74948 5.85869 5.92424 6.16079 6.21164 6.33765 6.56156 6.64268 6.89080 7.45366 7.53397 8.97727 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.003207 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.815989 B = 8728.805542 C = 9357.281840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.222 3.778 3 C -0.015 4.015 4 C -0.104 4.104 5 H 0.110 0.890 6 C -0.078 4.078 7 C 0.008 3.992 8 H 0.084 0.916 9 C -0.509 4.509 10 H 0.082 0.918 11 C 0.024 3.976 12 N -0.877 5.877 13 Si 0.925 3.075 14 H -0.251 1.251 15 H -0.291 1.291 16 H -0.299 1.299 17 C 0.388 3.612 18 O -0.488 6.488 19 C -0.172 4.172 20 C -0.103 4.103 21 C -0.140 4.140 22 C -0.101 4.101 23 C -0.134 4.134 24 C -0.074 4.074 25 C 0.397 3.603 26 O -0.482 6.482 27 C -0.191 4.191 28 C -0.074 4.074 29 C -0.136 4.136 30 C -0.085 4.085 31 C -0.135 4.135 32 C -0.082 4.082 33 H 0.153 0.847 34 H 0.125 0.875 35 H 0.030 0.970 36 H 0.065 0.935 37 H 0.251 0.749 38 H 0.102 0.898 39 H 0.142 0.858 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.147 0.853 43 H 0.127 0.873 44 H 0.144 0.856 45 H 0.160 0.840 46 H 0.155 0.845 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 6.547 -5.998 11.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.095 4.095 3 C -0.054 4.054 4 C -0.125 4.125 5 H 0.128 0.872 6 C -0.116 4.116 7 C -0.011 4.011 8 H 0.102 0.898 9 C -0.547 4.547 10 H 0.100 0.900 11 C -0.178 4.178 12 N -0.513 5.513 13 Si 0.753 3.247 14 H -0.174 1.174 15 H -0.218 1.218 16 H -0.226 1.226 17 C 0.267 3.733 18 O -0.365 6.365 19 C -0.173 4.173 20 C -0.122 4.122 21 C -0.157 4.157 22 C -0.118 4.118 23 C -0.151 4.151 24 C -0.092 4.092 25 C 0.276 3.724 26 O -0.359 6.359 27 C -0.192 4.192 28 C -0.092 4.092 29 C -0.154 4.154 30 C -0.103 4.103 31 C -0.153 4.153 32 C -0.100 4.100 33 H 0.171 0.829 34 H 0.143 0.857 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.121 0.879 39 H 0.160 0.840 40 H 0.174 0.826 41 H 0.175 0.825 42 H 0.164 0.836 43 H 0.144 0.856 44 H 0.162 0.838 45 H 0.177 0.823 46 H 0.173 0.827 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.325 5.510 -6.186 11.744 hybrid contribution 0.862 -0.617 1.513 1.847 sum -7.463 4.892 -4.674 10.074 Atomic orbital electron populations 1.81175 1.13495 1.09767 1.09424 1.29351 0.95478 0.92284 0.92359 1.19502 0.80541 1.04273 1.01097 1.21439 0.98989 0.91183 1.00845 0.87245 1.21109 0.90652 1.00952 0.98932 1.19303 0.89573 0.94741 0.97461 0.89771 1.21108 1.27241 1.15086 0.91273 0.89985 1.25681 0.95170 0.95349 1.01648 1.70235 1.31456 1.17486 1.32162 0.85990 0.78081 0.78400 0.82240 1.17380 1.21751 1.22561 1.23506 0.93782 0.86461 0.69545 1.90377 1.66852 1.42066 1.37194 1.21078 0.94710 0.96715 1.04787 1.21469 0.94444 0.98437 0.97836 1.21331 1.01122 0.91798 1.01490 1.21712 0.93959 0.99219 0.96945 1.21542 0.95571 0.97656 1.00372 1.21754 1.00995 0.91418 0.94987 1.23050 0.85221 0.90157 0.73923 1.90454 1.52778 1.59451 1.33258 1.20664 0.96487 0.96733 1.05333 1.21676 0.93852 0.99158 0.94527 1.21413 0.96165 0.97021 1.00826 1.21801 1.00432 0.93090 0.94955 1.21456 0.93012 1.01532 0.99311 1.21574 0.97271 0.94145 0.97032 0.82934 0.85733 0.95131 0.91602 0.93927 0.87946 0.83984 0.82592 0.82473 0.83566 0.85557 0.83835 0.82285 0.82690 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.69 17.04 20.01 0.34 -13.35 16 2 C 0.22 5.92 12.07 89.44 1.08 7.00 16 3 C -0.01 -0.36 5.05 28.79 0.15 -0.22 16 4 C -0.10 -3.57 1.73 -11.54 -0.02 -3.59 16 5 H 0.11 3.91 5.82 -2.38 -0.01 3.89 16 6 C -0.08 -3.32 2.89 30.59 0.09 -3.23 16 7 C 0.01 0.33 1.60 -12.29 -0.02 0.31 16 8 H 0.08 2.66 4.85 -2.38 -0.01 2.65 16 9 C -0.51 -22.50 7.60 25.60 0.19 -22.31 16 10 H 0.08 3.34 7.81 -2.91 -0.02 3.32 16 11 C 0.02 1.21 5.13 84.65 0.43 1.65 16 12 N -0.88 -48.65 9.30 21.45 0.20 -48.45 16 13 Si 0.93 40.35 29.54 68.60 2.03 42.38 16 14 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 15 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 16 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 17 C 0.39 17.67 5.58 28.03 0.16 17.83 16 18 O -0.49 -26.52 14.64 -2.94 -0.04 -26.57 16 19 C -0.17 -6.55 5.87 -20.15 -0.12 -6.67 16 20 C -0.10 -3.71 9.60 22.58 0.22 -3.49 16 21 C -0.14 -3.73 10.03 22.23 0.22 -3.51 16 22 C -0.10 -2.20 10.04 22.35 0.22 -1.97 16 23 C -0.13 -3.06 10.03 22.23 0.22 -2.83 16 24 C -0.07 -2.18 9.37 22.58 0.21 -1.97 16 25 C 0.40 14.68 5.98 28.03 0.17 14.85 16 26 O -0.48 -20.61 16.19 -2.93 -0.05 -20.66 16 27 C -0.19 -6.31 5.53 -20.15 -0.11 -6.43 16 28 C -0.07 -2.20 6.81 22.58 0.15 -2.05 16 29 C -0.14 -3.38 10.03 22.23 0.22 -3.15 16 30 C -0.09 -1.79 10.04 22.35 0.22 -1.57 16 31 C -0.14 -3.09 10.03 22.23 0.22 -2.87 16 32 C -0.08 -2.43 9.60 22.57 0.22 -2.22 16 33 H 0.15 3.01 6.25 -2.38 -0.01 3.00 16 34 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 36 H 0.07 3.50 5.84 -2.39 -0.01 3.49 16 37 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 38 H 0.10 4.01 7.65 -2.91 -0.02 3.98 16 39 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 40 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 42 H 0.15 3.87 6.47 -2.91 -0.02 3.85 16 43 H 0.13 3.78 5.02 -2.91 -0.01 3.76 16 44 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 45 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 46 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 47 H 0.13 3.75 7.65 -2.91 -0.02 3.73 16 Total: -1.00 -71.31 392.82 7.63 -63.68 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 1.02 Total: 29.40 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 4.14 Total: -26.44 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 0.54 Total: -61.79 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -0.09 Total: -47.22 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -71.31 7.63 -63.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002271862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.235 kcal (2) G-P(sol) polarization free energy of solvation -71.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds