Wall clock time and date at job start Tue Mar 31 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47399 * 352.03181 * 3 2 1 5 5 H 1.09004 * 109.46940 * 305.81438 * 4 3 2 6 6 C 1.53001 * 109.46949 * 65.80852 * 4 3 2 7 7 C 1.53002 * 109.46917 * 187.16437 * 6 4 3 8 8 H 1.09002 * 109.47186 * 52.78845 * 7 6 4 9 9 C 1.50698 * 109.47348 * 292.78475 * 7 6 4 10 10 H 1.08000 * 120.00384 * 114.73454 * 9 7 6 11 11 C 1.37878 * 119.99987 * 294.73416 * 9 7 6 12 12 N 1.31526 * 120.00115 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00236 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47283 * 59.99556 * 13 11 9 15 15 H 1.48500 * 109.47066 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46665 * 299.99816 * 13 11 9 17 17 C 1.50702 * 109.47020 * 172.78573 * 7 6 4 18 18 O 1.21255 * 120.00029 * 29.99567 * 17 7 6 19 19 C 1.47171 * 120.00179 * 210.00078 * 17 7 6 20 20 C 1.39854 * 120.16866 * 359.72497 * 19 17 7 21 21 C 1.37885 * 119.82654 * 179.81324 * 20 19 17 22 22 C 1.38408 * 120.16497 * 0.44046 * 21 20 19 23 23 C 1.38400 * 120.35441 * 359.78511 * 22 21 20 24 24 C 1.37883 * 120.17145 * 0.02562 * 23 22 21 25 25 C 1.50695 * 109.47499 * 185.81236 * 4 3 2 26 26 O 1.21261 * 119.99716 * 278.32955 * 25 4 3 27 27 C 1.47169 * 120.00169 * 98.32603 * 25 4 3 28 28 C 1.39852 * 120.16945 * 180.02562 * 27 25 4 29 29 C 1.37884 * 119.82342 * 180.02562 * 28 27 25 30 30 C 1.38403 * 120.17162 * 359.97304 * 29 28 27 31 31 C 1.38410 * 120.35053 * 0.27833 * 30 29 28 32 32 C 1.37893 * 120.16877 * 359.49162 * 31 30 29 33 33 H 1.09001 * 109.46986 * 232.03250 * 3 2 1 34 34 H 1.09005 * 109.46933 * 112.03277 * 3 2 1 35 35 H 1.09000 * 109.47665 * 307.16550 * 6 4 3 36 36 H 1.09003 * 109.47026 * 67.16717 * 6 4 3 37 37 H 0.96993 * 120.00076 * 179.97438 * 12 11 9 38 38 H 1.08005 * 120.08742 * 0.02562 * 20 19 17 39 39 H 1.07990 * 119.91695 * 180.20497 * 21 20 19 40 40 H 1.08011 * 119.81891 * 179.76795 * 22 21 20 41 41 H 1.07998 * 119.91542 * 179.97438 * 23 22 21 42 42 H 1.08004 * 120.08952 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.09101 * 359.97438 * 28 27 25 44 44 H 1.08003 * 119.91503 * 179.97438 * 29 28 27 45 45 H 1.07996 * 119.82639 * 180.02562 * 30 29 28 46 46 H 1.07994 * 119.91484 * 179.71939 * 31 30 29 47 47 H 1.07997 * 120.08418 * 180.23318 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4276 0.2000 5 1 2.6730 -1.8501 1.1006 6 6 2.7318 -2.2815 -1.0092 7 6 3.0828 -3.7450 -0.7334 8 1 2.6397 -4.0526 0.2139 9 6 4.5803 -3.8973 -0.6604 10 1 5.0494 -4.1834 0.2693 11 6 5.3516 -3.6713 -1.7807 12 7 4.7803 -3.3232 -2.9132 13 14 7.2077 -3.8607 -1.6906 14 1 7.5448 -5.2526 -1.2978 15 1 7.8006 -3.5645 -3.0195 16 1 7.7533 -2.9161 -0.6829 17 6 2.5435 -4.6089 -1.8442 18 8 2.4403 -4.1599 -2.9658 19 6 2.1420 -5.9975 -1.5677 20 6 2.2648 -6.5208 -0.2765 21 6 1.8828 -7.8215 -0.0245 22 6 1.3876 -8.6115 -1.0474 23 6 1.2674 -8.1025 -2.3288 24 6 1.6415 -6.8025 -2.5959 25 6 4.6187 -1.4094 0.3428 26 8 5.3212 -1.3594 -0.6444 27 6 5.2312 -1.4524 1.6803 28 6 6.6229 -1.4352 1.8169 29 6 7.1891 -1.4762 3.0735 30 6 6.3839 -1.5338 4.1977 31 6 5.0059 -1.5564 4.0706 32 6 4.4244 -1.5111 2.8211 33 1 2.9710 0.6331 0.8102 34 1 2.9711 0.3864 -0.9527 35 1 1.6604 -2.1926 -1.1891 36 1 3.2775 -1.9363 -1.8874 37 1 5.3229 -3.1639 -3.7012 38 1 2.6545 -5.9066 0.5218 39 1 1.9739 -8.2260 0.9726 40 1 1.0936 -9.6308 -0.8445 41 1 0.8805 -8.7253 -3.1217 42 1 1.5475 -6.4067 -3.5964 43 1 7.2525 -1.3907 0.9406 44 1 8.2637 -1.4634 3.1807 45 1 6.8333 -1.5653 5.1792 46 1 4.3844 -1.6060 4.9524 47 1 3.3489 -1.5251 2.7237 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002271863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:54 Heat of formation + Delta-G solvation = 16.103078 kcal Electronic energy + Delta-G solvation = -32484.341810 eV Core-core repulsion = 28369.838767 eV Total energy + Delta-G solvation = -4114.503043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.82012 -38.99770 -37.94065 -36.99843 -36.47479 -34.23799 -32.81607 -31.02641 -30.90163 -30.68479 -30.40650 -29.60821 -26.06867 -24.79872 -23.93672 -22.68050 -22.25348 -21.81320 -20.83864 -18.88495 -18.54698 -17.62030 -16.93824 -16.57263 -15.96571 -15.41318 -15.09440 -14.99841 -14.74841 -14.59488 -14.35239 -14.06133 -13.89817 -13.70164 -13.44709 -13.37710 -13.21896 -13.01371 -12.96354 -12.61950 -12.41521 -12.29815 -12.07128 -11.93598 -11.53448 -11.43852 -11.24911 -11.19228 -11.13885 -10.96186 -10.69615 -10.65334 -10.52809 -10.37706 -10.03326 -9.44373 -9.25506 -8.82129 -8.78402 -8.63523 -8.52157 -8.34175 -8.28824 -7.95671 -5.94918 -4.10656 1.12603 1.47228 1.58584 1.85122 2.90750 3.05174 3.17770 3.39410 3.39869 3.44991 3.67392 4.15466 4.19073 4.46573 4.62016 4.75609 5.02548 5.07944 5.08122 5.21769 5.27459 5.29632 5.35037 5.38606 5.48156 5.53590 5.61006 5.65721 5.67309 5.87948 5.91934 5.94813 6.01866 6.15583 6.24457 6.28039 6.38775 6.43492 6.58675 6.58877 6.62285 6.74053 6.79284 6.85064 6.89086 6.97037 7.08228 7.12368 7.31400 7.42990 7.71118 7.82135 7.93273 8.21329 8.55515 8.81272 9.21168 9.56997 11.01221 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.008201 B = 0.004167 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.485239 B = 6717.480412 C = 7377.887324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.221 3.779 3 C -0.020 4.020 4 C -0.110 4.110 5 H 0.084 0.916 6 C -0.097 4.097 7 C 0.018 3.982 8 H 0.036 0.964 9 C -0.543 4.543 10 H 0.059 0.941 11 C 0.100 3.900 12 N -0.828 5.828 13 Si 0.882 3.118 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.267 1.267 17 C 0.391 3.609 18 O -0.426 6.426 19 C -0.133 4.133 20 C -0.072 4.072 21 C -0.140 4.140 22 C -0.115 4.115 23 C -0.140 4.140 24 C -0.081 4.081 25 C 0.416 3.584 26 O -0.399 6.399 27 C -0.133 4.133 28 C -0.067 4.067 29 C -0.135 4.135 30 C -0.107 4.107 31 C -0.135 4.135 32 C -0.084 4.084 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.029 0.971 36 H 0.111 0.889 37 H 0.262 0.738 38 H 0.134 0.866 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.131 0.869 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 0.826 11.468 11.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.096 4.096 3 C -0.060 4.060 4 C -0.130 4.130 5 H 0.102 0.898 6 C -0.135 4.135 7 C -0.001 4.001 8 H 0.054 0.946 9 C -0.579 4.579 10 H 0.077 0.923 11 C -0.110 4.110 12 N -0.460 5.460 13 Si 0.711 3.289 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.192 1.192 17 C 0.266 3.734 18 O -0.298 6.298 19 C -0.134 4.134 20 C -0.090 4.090 21 C -0.158 4.158 22 C -0.134 4.134 23 C -0.158 4.158 24 C -0.099 4.099 25 C 0.289 3.711 26 O -0.269 6.269 27 C -0.134 4.134 28 C -0.086 4.086 29 C -0.153 4.153 30 C -0.125 4.125 31 C -0.153 4.153 32 C -0.102 4.102 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.048 0.952 36 H 0.130 0.870 37 H 0.072 0.928 38 H 0.152 0.848 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.551 1.171 10.081 10.266 hybrid contribution 1.649 -0.663 0.197 1.788 sum 0.098 0.508 10.278 10.291 Atomic orbital electron populations 1.81170 1.13013 1.08974 1.09416 1.29064 0.95141 0.92722 0.92721 1.19273 0.81850 0.99083 1.05843 1.21493 0.95286 0.93734 1.02506 0.89779 1.21559 0.97952 0.96537 0.97435 1.19052 0.97145 0.91242 0.92647 0.94565 1.20498 0.88483 1.51972 0.96967 0.92294 1.24806 0.97843 0.93120 0.95194 1.70057 1.34950 1.40831 1.00202 0.86827 0.86852 0.77804 0.77451 1.21228 1.21659 1.19238 1.22907 0.73200 0.85945 0.91385 1.90396 1.39963 1.74941 1.24546 1.21295 0.99985 0.98285 0.93825 1.21589 0.95689 0.94985 0.96776 1.21080 1.01066 0.94693 0.98940 1.21178 0.99610 0.99241 0.93327 1.21017 1.02183 0.95796 0.96778 1.21445 0.95817 0.93285 0.99350 1.21445 0.89894 0.72897 0.86882 1.90514 1.64313 1.32421 1.39679 1.20803 0.94101 1.02796 0.95713 1.21508 0.94520 0.94792 0.97744 1.21092 0.99784 1.01886 0.92561 1.21253 0.93963 0.98909 0.98358 1.21058 0.94911 1.02011 0.97360 1.21508 0.99983 0.96901 0.91803 0.87676 0.86729 0.95226 0.87029 0.92762 0.84845 0.86373 0.86721 0.86544 0.85661 0.85107 0.86205 0.86412 0.86102 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.71 18.54 42.15 0.78 -6.93 16 2 C 0.22 3.27 14.33 -20.76 -0.30 2.97 16 3 C -0.02 -0.26 5.16 -29.52 -0.15 -0.41 16 4 C -0.11 -1.75 1.79 -91.78 -0.16 -1.91 16 5 H 0.08 1.19 6.03 -51.93 -0.31 0.87 16 6 C -0.10 -1.99 3.52 -26.73 -0.09 -2.08 16 7 C 0.02 0.40 1.85 -92.92 -0.17 0.23 16 8 H 0.04 0.72 6.45 -51.93 -0.33 0.38 16 9 C -0.54 -12.90 5.81 -34.44 -0.20 -13.10 16 10 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 11 C 0.10 2.54 3.15 -17.81 -0.06 2.49 16 12 N -0.83 -22.38 9.09 55.43 0.50 -21.88 16 13 Si 0.88 20.97 28.58 -169.99 -4.86 16.11 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.27 -6.09 6.67 56.52 0.38 -5.71 16 17 C 0.39 9.14 5.51 -30.68 -0.17 8.97 16 18 O -0.43 -11.20 14.15 5.58 0.08 -11.12 16 19 C -0.13 -2.73 5.87 -105.06 -0.62 -3.34 16 20 C -0.07 -1.29 9.36 -39.11 -0.37 -1.65 16 21 C -0.14 -2.10 10.03 -39.65 -0.40 -2.50 16 22 C -0.12 -1.65 10.04 -39.46 -0.40 -2.05 16 23 C -0.14 -2.18 10.03 -39.65 -0.40 -2.57 16 24 C -0.08 -1.52 9.60 -39.11 -0.38 -1.90 16 25 C 0.42 7.29 4.01 -30.69 -0.12 7.16 16 26 O -0.40 -8.47 12.14 5.57 0.07 -8.40 16 27 C -0.13 -2.05 5.87 -105.07 -0.62 -2.67 16 28 C -0.07 -1.04 9.60 -39.11 -0.38 -1.42 16 29 C -0.14 -1.71 10.03 -39.65 -0.40 -2.11 16 30 C -0.11 -1.18 10.04 -39.46 -0.40 -1.58 16 31 C -0.14 -1.49 10.03 -39.64 -0.40 -1.89 16 32 C -0.08 -1.05 9.38 -39.11 -0.37 -1.42 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.03 0.61 7.19 -51.93 -0.37 0.23 16 36 H 0.11 2.69 5.78 -51.93 -0.30 2.39 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.13 2.28 6.37 -52.48 -0.33 1.95 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 42 H 0.13 2.41 7.65 -52.48 -0.40 2.00 16 43 H 0.13 2.22 7.21 -52.48 -0.38 1.85 16 44 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.13 1.38 6.18 -52.49 -0.32 1.06 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -31.16 392.00 -9.76 -40.92 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.71 Total: 6.17 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -6.53 Total: -20.77 kcal Atomic # 7 Polarization: -30.09 SS G_CDS: 1.29 Total: -28.81 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.15 Total: -19.53 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.86 Total: 16.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.16 -9.76 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002271863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.025 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds