Wall clock time and date at job start Tue Mar 31 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47399 * 352.03181 * 3 2 1 5 5 H 1.09004 * 109.46940 * 305.81438 * 4 3 2 6 6 C 1.53001 * 109.46949 * 65.80852 * 4 3 2 7 7 C 1.53002 * 109.46917 * 187.16437 * 6 4 3 8 8 H 1.09002 * 109.47186 * 52.78845 * 7 6 4 9 9 C 1.50698 * 109.47348 * 292.78475 * 7 6 4 10 10 H 1.08000 * 120.00384 * 114.73454 * 9 7 6 11 11 C 1.37878 * 119.99987 * 294.73416 * 9 7 6 12 12 N 1.31526 * 120.00115 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00236 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47283 * 59.99556 * 13 11 9 15 15 H 1.48500 * 109.47066 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46665 * 299.99816 * 13 11 9 17 17 C 1.50702 * 109.47020 * 172.78573 * 7 6 4 18 18 O 1.21255 * 120.00029 * 29.99567 * 17 7 6 19 19 C 1.47171 * 120.00179 * 210.00078 * 17 7 6 20 20 C 1.39854 * 120.16866 * 359.72497 * 19 17 7 21 21 C 1.37885 * 119.82654 * 179.81324 * 20 19 17 22 22 C 1.38408 * 120.16497 * 0.44046 * 21 20 19 23 23 C 1.38400 * 120.35441 * 359.78511 * 22 21 20 24 24 C 1.37883 * 120.17145 * 0.02562 * 23 22 21 25 25 C 1.50695 * 109.47499 * 185.81236 * 4 3 2 26 26 O 1.21261 * 119.99716 * 278.32955 * 25 4 3 27 27 C 1.47169 * 120.00169 * 98.32603 * 25 4 3 28 28 C 1.39852 * 120.16945 * 180.02562 * 27 25 4 29 29 C 1.37884 * 119.82342 * 180.02562 * 28 27 25 30 30 C 1.38403 * 120.17162 * 359.97304 * 29 28 27 31 31 C 1.38410 * 120.35053 * 0.27833 * 30 29 28 32 32 C 1.37893 * 120.16877 * 359.49162 * 31 30 29 33 33 H 1.09001 * 109.46986 * 232.03250 * 3 2 1 34 34 H 1.09005 * 109.46933 * 112.03277 * 3 2 1 35 35 H 1.09000 * 109.47665 * 307.16550 * 6 4 3 36 36 H 1.09003 * 109.47026 * 67.16717 * 6 4 3 37 37 H 0.96993 * 120.00076 * 179.97438 * 12 11 9 38 38 H 1.08005 * 120.08742 * 0.02562 * 20 19 17 39 39 H 1.07990 * 119.91695 * 180.20497 * 21 20 19 40 40 H 1.08011 * 119.81891 * 179.76795 * 22 21 20 41 41 H 1.07998 * 119.91542 * 179.97438 * 23 22 21 42 42 H 1.08004 * 120.08952 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.09101 * 359.97438 * 28 27 25 44 44 H 1.08003 * 119.91503 * 179.97438 * 29 28 27 45 45 H 1.07996 * 119.82639 * 180.02562 * 30 29 28 46 46 H 1.07994 * 119.91484 * 179.71939 * 31 30 29 47 47 H 1.07997 * 120.08418 * 180.23318 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4276 0.2000 5 1 2.6730 -1.8501 1.1006 6 6 2.7318 -2.2815 -1.0092 7 6 3.0828 -3.7450 -0.7334 8 1 2.6397 -4.0526 0.2139 9 6 4.5803 -3.8973 -0.6604 10 1 5.0494 -4.1834 0.2693 11 6 5.3516 -3.6713 -1.7807 12 7 4.7803 -3.3232 -2.9132 13 14 7.2077 -3.8607 -1.6906 14 1 7.5448 -5.2526 -1.2978 15 1 7.8006 -3.5645 -3.0195 16 1 7.7533 -2.9161 -0.6829 17 6 2.5435 -4.6089 -1.8442 18 8 2.4403 -4.1599 -2.9658 19 6 2.1420 -5.9975 -1.5677 20 6 2.2648 -6.5208 -0.2765 21 6 1.8828 -7.8215 -0.0245 22 6 1.3876 -8.6115 -1.0474 23 6 1.2674 -8.1025 -2.3288 24 6 1.6415 -6.8025 -2.5959 25 6 4.6187 -1.4094 0.3428 26 8 5.3212 -1.3594 -0.6444 27 6 5.2312 -1.4524 1.6803 28 6 6.6229 -1.4352 1.8169 29 6 7.1891 -1.4762 3.0735 30 6 6.3839 -1.5338 4.1977 31 6 5.0059 -1.5564 4.0706 32 6 4.4244 -1.5111 2.8211 33 1 2.9710 0.6331 0.8102 34 1 2.9711 0.3864 -0.9527 35 1 1.6604 -2.1926 -1.1891 36 1 3.2775 -1.9363 -1.8874 37 1 5.3229 -3.1639 -3.7012 38 1 2.6545 -5.9066 0.5218 39 1 1.9739 -8.2260 0.9726 40 1 1.0936 -9.6308 -0.8445 41 1 0.8805 -8.7253 -3.1217 42 1 1.5475 -6.4067 -3.5964 43 1 7.2525 -1.3907 0.9406 44 1 8.2637 -1.4634 3.1807 45 1 6.8333 -1.5653 5.1792 46 1 4.3844 -1.6060 4.9524 47 1 3.3489 -1.5251 2.7237 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002271863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:53 Heat of formation + Delta-G solvation = 1.491560 kcal Electronic energy + Delta-G solvation = -32484.975413 eV Core-core repulsion = 28369.838767 eV Total energy + Delta-G solvation = -4115.136646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.15602 -40.41157 -39.10228 -38.53884 -37.76615 -35.83349 -34.47732 -32.53874 -31.98582 -31.72069 -31.65819 -31.10833 -27.54208 -26.36330 -25.44226 -23.88972 -23.43383 -23.00490 -22.20051 -20.42956 -19.92570 -18.81957 -18.37705 -17.81031 -17.58059 -16.77205 -16.49822 -16.26630 -16.20655 -16.03889 -15.60962 -15.33603 -15.27826 -14.96504 -14.91252 -14.70395 -14.44707 -14.33314 -14.29132 -14.10381 -13.86228 -13.55321 -13.30110 -13.29291 -13.13040 -12.91576 -12.78894 -12.59579 -12.41184 -12.39045 -12.36655 -12.03547 -11.88407 -11.81443 -11.52192 -11.17359 -11.08447 -10.46933 -9.99470 -9.81238 -9.75323 -9.74324 -9.68704 -9.63034 -7.91999 -6.07396 0.06357 0.07510 0.55794 0.62380 1.36669 1.43221 1.45083 1.71893 1.86027 2.06151 2.11971 2.52777 2.99274 3.09600 3.12223 3.41134 3.58073 3.66363 4.05885 4.07921 4.12019 4.18916 4.23566 4.23653 4.30832 4.36468 4.48028 4.61976 4.64179 4.66279 4.69634 4.78074 4.79712 4.95590 5.00542 5.01847 5.13448 5.16151 5.22865 5.28974 5.36888 5.40257 5.58866 5.61160 5.62026 5.68443 5.74684 5.76605 5.81112 6.11445 6.13768 6.18114 6.33801 6.63336 6.87242 7.24544 7.45769 7.60976 9.01953 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.008201 B = 0.004167 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.485239 B = 6717.480412 C = 7377.887324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.243 3.757 3 C -0.013 4.013 4 C -0.105 4.105 5 H 0.110 0.890 6 C -0.088 4.088 7 C 0.013 3.987 8 H 0.058 0.942 9 C -0.522 4.522 10 H 0.057 0.943 11 C 0.072 3.928 12 N -0.854 5.854 13 Si 0.910 3.090 14 H -0.286 1.286 15 H -0.305 1.305 16 H -0.257 1.257 17 C 0.382 3.618 18 O -0.473 6.473 19 C -0.174 4.174 20 C -0.080 4.080 21 C -0.133 4.133 22 C -0.100 4.100 23 C -0.137 4.137 24 C -0.103 4.103 25 C 0.419 3.581 26 O -0.448 6.448 27 C -0.158 4.158 28 C -0.093 4.093 29 C -0.141 4.141 30 C -0.096 4.096 31 C -0.129 4.129 32 C -0.080 4.080 33 H 0.152 0.848 34 H 0.113 0.887 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.247 0.753 38 H 0.136 0.864 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.146 0.854 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.136 0.864 45 H 0.153 0.847 46 H 0.157 0.843 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 -0.923 16.271 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.074 4.074 3 C -0.053 4.053 4 C -0.126 4.126 5 H 0.128 0.872 6 C -0.126 4.126 7 C -0.006 4.006 8 H 0.076 0.924 9 C -0.558 4.558 10 H 0.075 0.925 11 C -0.134 4.134 12 N -0.489 5.489 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.233 1.233 16 H -0.181 1.181 17 C 0.261 3.739 18 O -0.348 6.348 19 C -0.175 4.175 20 C -0.098 4.098 21 C -0.151 4.151 22 C -0.118 4.118 23 C -0.155 4.155 24 C -0.122 4.122 25 C 0.295 3.705 26 O -0.321 6.321 27 C -0.159 4.159 28 C -0.112 4.112 29 C -0.159 4.159 30 C -0.114 4.114 31 C -0.147 4.147 32 C -0.098 4.098 33 H 0.170 0.830 34 H 0.131 0.869 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.154 0.846 39 H 0.175 0.825 40 H 0.178 0.822 41 H 0.164 0.836 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.154 0.846 45 H 0.170 0.830 46 H 0.175 0.825 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.234 -0.584 14.932 15.109 hybrid contribution 1.848 -0.224 -1.170 2.199 sum -0.386 -0.808 13.762 13.791 Atomic orbital electron populations 1.81191 1.14305 1.10286 1.11012 1.29295 0.95249 0.91457 0.91350 1.19362 0.80409 0.97833 1.07684 1.21436 0.94953 0.94929 1.01243 0.87179 1.21321 0.96607 0.96528 0.98160 1.19156 0.96112 0.92047 0.93304 0.92384 1.20532 0.89367 1.49895 0.96056 0.92460 1.25183 0.99500 0.93439 0.95316 1.70238 1.34850 1.43453 1.00365 0.86383 0.85285 0.77651 0.76789 1.21286 1.23250 1.18124 1.23419 0.71980 0.87648 0.90895 1.90364 1.42266 1.76172 1.26044 1.21178 1.03120 0.97297 0.95898 1.21700 0.96069 0.96602 0.95437 1.21524 0.99259 0.93237 1.01045 1.21721 0.97004 1.00960 0.92069 1.21363 1.01105 0.94369 0.98681 1.21473 0.97317 0.95089 0.98288 1.21866 0.90167 0.71058 0.87455 1.90507 1.65281 1.34916 1.41432 1.20647 0.94344 1.05544 0.95327 1.21434 0.94627 0.97015 0.98092 1.21319 1.01044 1.01544 0.91984 1.21691 0.94090 0.96468 0.99146 1.21501 0.95352 1.00021 0.97809 1.21744 1.00755 0.95903 0.91425 0.83033 0.86921 0.96168 0.90993 0.94313 0.84608 0.82499 0.82229 0.83619 0.87784 0.88185 0.84634 0.82953 0.82522 0.83225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.69 18.54 20.00 0.37 -16.32 16 2 C 0.24 6.99 14.33 89.44 1.28 8.28 16 3 C -0.01 -0.32 5.16 28.79 0.15 -0.17 16 4 C -0.11 -3.31 1.79 -11.54 -0.02 -3.33 16 5 H 0.11 2.86 6.03 -2.38 -0.01 2.84 16 6 C -0.09 -3.76 3.52 30.60 0.11 -3.65 16 7 C 0.01 0.58 1.85 -12.29 -0.02 0.56 16 8 H 0.06 2.29 6.45 -2.39 -0.02 2.27 16 9 C -0.52 -25.46 5.81 25.60 0.15 -25.31 16 10 H 0.06 2.78 7.81 -2.91 -0.02 2.75 16 11 C 0.07 3.82 3.15 84.65 0.27 4.09 16 12 N -0.85 -49.52 9.09 21.45 0.19 -49.33 16 13 Si 0.91 44.68 28.58 68.60 1.96 46.64 16 14 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 15 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 16 H -0.26 -12.04 6.67 99.48 0.66 -11.38 16 17 C 0.38 18.84 5.51 28.03 0.15 19.00 16 18 O -0.47 -26.82 14.15 -2.95 -0.04 -26.86 16 19 C -0.17 -7.31 5.87 -20.15 -0.12 -7.42 16 20 C -0.08 -2.73 9.36 22.58 0.21 -2.52 16 21 C -0.13 -3.48 10.03 22.23 0.22 -3.25 16 22 C -0.10 -2.42 10.04 22.35 0.22 -2.19 16 23 C -0.14 -3.98 10.03 22.22 0.22 -3.75 16 24 C -0.10 -3.99 9.60 22.58 0.22 -3.77 16 25 C 0.42 14.77 4.01 28.03 0.11 14.89 16 26 O -0.45 -19.98 12.14 -2.97 -0.04 -20.01 16 27 C -0.16 -4.68 5.87 -20.15 -0.12 -4.80 16 28 C -0.09 -2.87 9.60 22.58 0.22 -2.65 16 29 C -0.14 -3.26 10.03 22.23 0.22 -3.04 16 30 C -0.10 -1.70 10.04 22.35 0.22 -1.47 16 31 C -0.13 -2.21 10.03 22.23 0.22 -1.99 16 32 C -0.08 -1.73 9.38 22.58 0.21 -1.52 16 33 H 0.15 2.34 8.14 -2.39 -0.02 2.33 16 34 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 35 H 0.02 0.86 7.19 -2.39 -0.02 0.84 16 36 H 0.07 3.72 5.78 -2.39 -0.01 3.70 16 37 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 38 H 0.14 4.43 6.37 -2.91 -0.02 4.42 16 39 H 0.16 2.90 8.06 -2.92 -0.02 2.88 16 40 H 0.16 2.51 8.06 -2.90 -0.02 2.49 16 41 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 42 H 0.10 4.32 7.65 -2.91 -0.02 4.30 16 43 H 0.10 3.61 7.21 -2.91 -0.02 3.59 16 44 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 45 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 47 H 0.15 2.53 6.18 -2.91 -0.02 2.51 16 Total: -1.00 -76.24 392.00 7.55 -68.69 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.96 Total: 21.22 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 4.14 Total: -24.03 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: 0.57 Total: -65.65 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -0.08 Total: -46.87 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.96 Total: 46.64 kcal Total: -76.24 7.55 -68.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002271863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.184 kcal (2) G-P(sol) polarization free energy of solvation -76.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds