Wall clock time and date at job start Tue Mar 31 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38559 * 119.97345 * 2 1 4 4 N 1.33398 * 133.65230 * 359.97438 * 3 2 1 5 5 C 1.31754 * 109.97158 * 180.02562 * 4 3 2 6 6 N 1.37596 * 125.30435 * 180.02562 * 5 4 3 7 7 C 1.46504 * 120.00058 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.46777 * 275.00121 * 7 6 5 9 9 C 1.53003 * 109.46958 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47469 * 59.99659 * 9 8 7 11 11 C 1.53003 * 109.47185 * 300.00638 * 10 9 8 12 12 C 1.52994 * 109.47154 * 155.00217 * 7 6 5 13 13 N 1.35928 * 109.39423 * 359.97438 * 5 4 3 14 14 C 1.46498 * 126.63229 * 180.02562 * 13 5 4 15 15 C 1.50701 * 109.47393 * 90.02704 * 14 13 5 16 16 H 1.08008 * 119.99762 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00094 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99951 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99734 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46840 * 89.99883 * 19 17 15 21 21 H 1.48496 * 109.46627 * 209.99473 * 19 17 15 22 22 H 1.48496 * 109.47107 * 329.99953 * 19 17 15 23 23 C 1.38848 * 106.73382 * 359.97438 * 13 5 4 24 24 C 1.40608 * 134.42252 * 179.97438 * 23 13 5 25 25 O 1.21877 * 120.34862 * 0.02562 * 24 23 13 26 26 N 1.34906 * 119.30499 * 180.02562 * 24 23 13 27 27 C 1.46500 * 119.50588 * 179.97438 * 26 24 23 28 28 C 1.34423 * 120.99584 * 359.97438 * 26 24 23 29 29 O 1.21601 * 119.19106 * 180.28329 * 28 26 24 30 30 H 1.08993 * 109.47593 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46714 * 299.97705 * 1 2 3 32 32 H 1.09000 * 109.47548 * 59.97025 * 1 2 3 33 33 H 0.96996 * 120.00279 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.46907 * 34.99932 * 7 6 5 35 35 H 1.08993 * 109.47532 * 299.99624 * 8 7 6 36 36 H 1.09004 * 109.47488 * 59.99972 * 8 7 6 37 37 H 1.09001 * 109.46880 * 299.99906 * 9 8 7 38 38 H 1.09005 * 109.47192 * 180.02562 * 9 8 7 39 39 H 1.08993 * 109.47302 * 179.97438 * 10 9 8 40 40 H 1.09000 * 109.46488 * 59.99858 * 10 9 8 41 41 H 1.08996 * 109.46466 * 299.99725 * 11 10 9 42 42 H 1.08995 * 109.46893 * 179.97438 * 11 10 9 43 43 H 1.09003 * 109.47150 * 299.99608 * 12 7 6 44 44 H 1.09001 * 109.47446 * 60.00045 * 12 7 6 45 45 H 1.09007 * 109.47361 * 210.02430 * 14 13 5 46 46 H 1.08993 * 109.47348 * 330.02326 * 14 13 5 47 47 H 0.97005 * 119.99734 * 180.02562 * 18 17 15 48 48 H 1.08995 * 109.47208 * 179.97438 * 27 26 24 49 49 H 1.09003 * 109.46789 * 299.99884 * 27 26 24 50 50 H 1.09002 * 109.46826 * 59.99537 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1572 1.2003 0.0000 4 7 1.7812 2.4801 -0.0004 5 6 2.8424 3.2610 -0.0007 6 7 2.8174 4.6367 -0.0007 7 6 1.5355 5.3461 -0.0009 8 6 1.0287 5.4830 -1.4380 9 6 -0.3104 6.2232 -1.4381 10 6 -0.1244 7.6140 -0.8282 11 6 0.3826 7.4771 0.6089 12 6 1.7222 6.7369 0.6087 13 7 3.9658 2.4958 0.0000 14 6 5.3501 2.9753 0.0005 15 6 5.8243 3.1397 1.4215 16 1 5.1608 2.9102 2.2422 17 6 7.1050 3.5839 1.6739 18 7 7.9128 3.8637 0.6746 19 14 7.6925 3.7882 3.4353 20 1 8.3070 2.5195 3.9024 21 1 8.6991 4.8781 3.4980 22 1 6.5387 4.1292 4.3056 23 6 3.5477 1.1718 0.0015 24 6 4.2089 -0.0691 0.0024 25 8 5.4267 -0.1180 0.0023 26 7 3.4812 -1.2051 0.0032 27 6 4.1656 -2.5004 0.0036 28 6 2.1375 -1.1664 0.0038 29 8 1.5142 -2.2105 0.0098 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3634 0.5143 -0.8897 33 1 3.6484 5.1369 -0.0006 34 1 0.8099 4.7854 0.5884 35 1 1.7541 6.0436 -2.0273 36 1 0.8957 4.4921 -1.8724 37 1 -1.0357 5.6621 -0.8489 38 1 -0.6717 6.3204 -2.4620 39 1 -1.0782 8.1415 -0.8288 40 1 0.6010 8.1750 -1.4175 41 1 -0.3428 6.9160 1.1980 42 1 0.5154 8.4679 1.0431 43 1 2.0833 6.6393 1.6326 44 1 2.4477 7.2975 0.0194 45 1 5.9850 2.2533 -0.5131 46 1 5.4023 3.9352 -0.5132 47 1 8.8139 4.1759 0.8521 48 1 3.4268 -3.3017 0.0048 49 1 4.7892 -2.5820 -0.8867 50 1 4.7901 -2.5811 0.8933 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002427557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:02 Heat of formation + Delta-G solvation = 9.821295 kcal Electronic energy + Delta-G solvation = -34103.491979 eV Core-core repulsion = 29745.993120 eV Total energy + Delta-G solvation = -4357.498859 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.35542 -40.62280 -38.76271 -38.48121 -36.21060 -34.83299 -34.44863 -33.82939 -32.08360 -30.82705 -30.24623 -28.98909 -27.47777 -26.60725 -26.37976 -23.58710 -23.11289 -22.77977 -22.52754 -21.87909 -20.09729 -19.83490 -18.78719 -17.87347 -17.07111 -16.77736 -16.57345 -16.35406 -15.85118 -15.24167 -14.96981 -14.89831 -14.83656 -14.52015 -14.48952 -14.28929 -14.18587 -14.00449 -13.15732 -13.05635 -12.85696 -12.70549 -12.60912 -12.39114 -12.24885 -12.22265 -12.17517 -11.86265 -11.35156 -11.25415 -11.20950 -10.94295 -10.80147 -10.73873 -10.69282 -10.47441 -10.35736 -10.23784 -9.95825 -9.89359 -9.46501 -9.46039 -9.15651 -8.67522 -8.54274 -6.94921 -6.29791 -4.37954 1.66116 2.10339 2.37100 2.71858 3.18834 3.25561 3.26872 3.34903 3.39989 3.88050 3.97677 4.25813 4.61899 4.65329 4.70053 4.89208 4.93962 5.05351 5.10367 5.19143 5.37356 5.40088 5.42636 5.43893 5.48505 5.54553 5.57848 5.58293 5.64143 5.71299 5.81658 5.83613 5.88795 5.95359 5.98027 6.01432 6.04448 6.06551 6.17328 6.26303 6.30570 6.41365 6.70694 6.88080 7.07056 7.32088 7.37035 7.59110 7.62801 7.80884 7.89583 8.03613 8.31040 8.51687 8.65595 9.28754 10.77754 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.006350 B = 0.004862 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4408.529161 B = 5757.086559 C = 9468.426102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.509 5.509 3 C 0.315 3.685 4 N -0.547 5.547 5 C 0.542 3.458 6 N -0.698 5.698 7 C 0.174 3.826 8 C -0.132 4.132 9 C -0.114 4.114 10 C -0.122 4.122 11 C -0.113 4.113 12 C -0.130 4.130 13 N -0.411 5.411 14 C 0.238 3.762 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.070 3.930 18 N -0.887 5.887 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.273 1.273 23 C -0.154 4.154 24 C 0.585 3.415 25 O -0.498 6.498 26 N -0.557 5.557 27 C 0.088 3.912 28 C 0.711 3.289 29 O -0.561 6.561 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.417 0.583 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.046 0.954 47 H 0.268 0.732 48 H 0.098 0.902 49 H 0.075 0.925 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.668 2.787 -3.377 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.237 5.237 3 C 0.082 3.918 4 N -0.281 5.281 5 C 0.188 3.812 6 N -0.341 5.341 7 C 0.069 3.931 8 C -0.171 4.171 9 C -0.153 4.153 10 C -0.159 4.159 11 C -0.151 4.151 12 C -0.168 4.168 13 N -0.098 5.098 14 C 0.120 3.880 15 C -0.574 4.574 16 H 0.081 0.919 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.731 3.269 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.272 4.272 24 C 0.380 3.620 25 O -0.372 6.372 26 N -0.302 5.302 27 C -0.054 4.054 28 C 0.414 3.586 29 O -0.436 6.436 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.255 0.745 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.117 0.883 49 H 0.094 0.906 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.873 2.538 -3.421 16.435 hybrid contribution 1.705 0.208 0.938 1.957 sum -14.169 2.745 -2.483 14.644 Atomic orbital electron populations 1.21833 0.75368 1.04491 1.03151 1.43588 1.08198 1.01209 1.70695 1.17664 0.87115 0.86643 1.00386 1.69473 1.26806 0.97922 1.33853 1.18799 0.81142 0.85541 0.95750 1.43337 1.09584 0.98589 1.82554 1.20818 0.84333 0.91763 0.96187 1.22001 0.96774 1.01076 0.97226 1.21479 0.97352 0.95711 1.00723 1.21580 1.00883 0.97230 0.96234 1.21467 0.96491 1.00190 0.96957 1.21840 0.98170 0.94974 1.01798 1.45356 1.08924 1.02093 1.53445 1.19887 0.72234 0.96276 0.99572 1.21163 0.98927 1.46547 0.90786 0.91933 1.24877 0.95940 0.94543 0.98003 1.69912 1.07588 1.43916 1.31010 0.86386 0.78629 0.78078 0.83780 1.20236 1.20857 1.19733 1.18278 0.92166 0.86916 1.29808 1.15420 0.86953 0.82204 0.77382 1.90962 1.12145 1.86714 1.47380 1.45841 1.05698 1.09845 1.68816 1.21827 0.97805 0.82059 1.03681 1.15403 0.81638 0.83270 0.78324 1.90931 1.66178 1.29450 1.57087 0.88623 0.90887 0.90879 0.74517 0.89399 0.92025 0.91190 0.91753 0.92086 0.92162 0.91990 0.91689 0.91718 0.90974 0.91300 0.91749 0.93643 0.92227 0.88316 0.90595 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 10.62 59.85 0.64 1.79 16 2 N -0.51 -8.43 3.06 -128.30 -0.39 -8.83 16 3 C 0.32 5.94 7.68 -154.62 -1.19 4.75 16 4 N -0.55 -9.89 10.53 -12.76 -0.13 -10.02 16 5 C 0.54 10.20 8.42 -320.34 -2.70 7.51 16 6 N -0.70 -10.82 5.19 -55.33 -0.29 -11.11 16 7 C 0.17 2.12 2.58 -67.93 -0.18 1.94 16 8 C -0.13 -1.45 5.50 -26.73 -0.15 -1.60 16 9 C -0.11 -1.01 5.92 -26.73 -0.16 -1.17 16 10 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 11 C -0.11 -0.94 5.93 -26.70 -0.16 -1.10 16 12 C -0.13 -1.32 5.39 -26.71 -0.14 -1.47 16 13 N -0.41 -8.99 2.82 -116.17 -0.33 -9.31 16 14 C 0.24 5.85 5.49 -5.19 -0.03 5.82 16 15 C -0.54 -14.31 9.39 -34.44 -0.32 -14.64 16 16 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 17 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 18 N -0.89 -24.63 13.29 55.43 0.74 -23.89 16 19 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 C -0.15 -3.32 6.91 -83.48 -0.58 -3.90 16 24 C 0.58 12.56 7.42 -15.31 -0.11 12.45 16 25 O -0.50 -12.21 15.99 5.03 0.08 -12.13 16 26 N -0.56 -10.04 2.96 -131.80 -0.39 -10.43 16 27 C 0.09 1.26 9.99 59.85 0.60 1.86 16 28 C 0.71 12.38 8.12 -87.35 -0.71 11.67 16 29 O -0.56 -9.85 14.77 5.28 0.08 -9.77 16 30 H 0.10 1.11 6.85 -51.93 -0.36 0.75 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.42 6.54 7.79 -40.82 -0.32 6.22 16 34 H 0.09 1.16 7.76 -51.93 -0.40 0.76 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 1.78 7.28 -51.92 -0.38 1.41 16 46 H 0.05 1.09 7.47 -51.93 -0.39 0.70 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.10 1.26 6.80 -51.93 -0.35 0.91 16 49 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -31.52 404.26 -12.67 -44.18 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.66 Total: 4.69 kcal Atomic # 6 Polarization: 30.02 SS G_CDS: -5.44 Total: 24.58 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -0.79 Total: -73.59 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.16 Total: -21.91 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.52 -12.67 -44.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002427557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.006 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds