Wall clock time and date at job start Tue Mar 31 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38559 * 119.97345 * 2 1 4 4 N 1.33398 * 133.65230 * 359.97438 * 3 2 1 5 5 C 1.31754 * 109.97158 * 180.02562 * 4 3 2 6 6 N 1.37596 * 125.30435 * 180.02562 * 5 4 3 7 7 C 1.46504 * 120.00058 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.46777 * 275.00121 * 7 6 5 9 9 C 1.53003 * 109.46958 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47469 * 59.99659 * 9 8 7 11 11 C 1.53003 * 109.47185 * 300.00638 * 10 9 8 12 12 C 1.52994 * 109.47154 * 155.00217 * 7 6 5 13 13 N 1.35928 * 109.39423 * 359.97438 * 5 4 3 14 14 C 1.46498 * 126.63229 * 180.02562 * 13 5 4 15 15 C 1.50701 * 109.47393 * 90.02704 * 14 13 5 16 16 H 1.08008 * 119.99762 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00094 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99951 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99734 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46840 * 89.99883 * 19 17 15 21 21 H 1.48496 * 109.46627 * 209.99473 * 19 17 15 22 22 H 1.48496 * 109.47107 * 329.99953 * 19 17 15 23 23 C 1.38848 * 106.73382 * 359.97438 * 13 5 4 24 24 C 1.40608 * 134.42252 * 179.97438 * 23 13 5 25 25 O 1.21877 * 120.34862 * 0.02562 * 24 23 13 26 26 N 1.34906 * 119.30499 * 180.02562 * 24 23 13 27 27 C 1.46500 * 119.50588 * 179.97438 * 26 24 23 28 28 C 1.34423 * 120.99584 * 359.97438 * 26 24 23 29 29 O 1.21601 * 119.19106 * 180.28329 * 28 26 24 30 30 H 1.08993 * 109.47593 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46714 * 299.97705 * 1 2 3 32 32 H 1.09000 * 109.47548 * 59.97025 * 1 2 3 33 33 H 0.96996 * 120.00279 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.46907 * 34.99932 * 7 6 5 35 35 H 1.08993 * 109.47532 * 299.99624 * 8 7 6 36 36 H 1.09004 * 109.47488 * 59.99972 * 8 7 6 37 37 H 1.09001 * 109.46880 * 299.99906 * 9 8 7 38 38 H 1.09005 * 109.47192 * 180.02562 * 9 8 7 39 39 H 1.08993 * 109.47302 * 179.97438 * 10 9 8 40 40 H 1.09000 * 109.46488 * 59.99858 * 10 9 8 41 41 H 1.08996 * 109.46466 * 299.99725 * 11 10 9 42 42 H 1.08995 * 109.46893 * 179.97438 * 11 10 9 43 43 H 1.09003 * 109.47150 * 299.99608 * 12 7 6 44 44 H 1.09001 * 109.47446 * 60.00045 * 12 7 6 45 45 H 1.09007 * 109.47361 * 210.02430 * 14 13 5 46 46 H 1.08993 * 109.47348 * 330.02326 * 14 13 5 47 47 H 0.97005 * 119.99734 * 180.02562 * 18 17 15 48 48 H 1.08995 * 109.47208 * 179.97438 * 27 26 24 49 49 H 1.09003 * 109.46789 * 299.99884 * 27 26 24 50 50 H 1.09002 * 109.46826 * 59.99537 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1572 1.2003 0.0000 4 7 1.7812 2.4801 -0.0004 5 6 2.8424 3.2610 -0.0007 6 7 2.8174 4.6367 -0.0007 7 6 1.5355 5.3461 -0.0009 8 6 1.0287 5.4830 -1.4380 9 6 -0.3104 6.2232 -1.4381 10 6 -0.1244 7.6140 -0.8282 11 6 0.3826 7.4771 0.6089 12 6 1.7222 6.7369 0.6087 13 7 3.9658 2.4958 0.0000 14 6 5.3501 2.9753 0.0005 15 6 5.8243 3.1397 1.4215 16 1 5.1608 2.9102 2.2422 17 6 7.1050 3.5839 1.6739 18 7 7.9128 3.8637 0.6746 19 14 7.6925 3.7882 3.4353 20 1 8.3070 2.5195 3.9024 21 1 8.6991 4.8781 3.4980 22 1 6.5387 4.1292 4.3056 23 6 3.5477 1.1718 0.0015 24 6 4.2089 -0.0691 0.0024 25 8 5.4267 -0.1180 0.0023 26 7 3.4812 -1.2051 0.0032 27 6 4.1656 -2.5004 0.0036 28 6 2.1375 -1.1664 0.0038 29 8 1.5142 -2.2105 0.0098 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3634 0.5143 -0.8897 33 1 3.6484 5.1369 -0.0006 34 1 0.8099 4.7854 0.5884 35 1 1.7541 6.0436 -2.0273 36 1 0.8957 4.4921 -1.8724 37 1 -1.0357 5.6621 -0.8489 38 1 -0.6717 6.3204 -2.4620 39 1 -1.0782 8.1415 -0.8288 40 1 0.6010 8.1750 -1.4175 41 1 -0.3428 6.9160 1.1980 42 1 0.5154 8.4679 1.0431 43 1 2.0833 6.6393 1.6326 44 1 2.4477 7.2975 0.0194 45 1 5.9850 2.2533 -0.5131 46 1 5.4023 3.9352 -0.5132 47 1 8.8139 4.1759 0.8521 48 1 3.4268 -3.3017 0.0048 49 1 4.7892 -2.5820 -0.8867 50 1 4.7901 -2.5811 0.8933 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002427557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:01 Heat of formation + Delta-G solvation = -5.311954 kcal Electronic energy + Delta-G solvation = -34104.148206 eV Core-core repulsion = 29745.993120 eV Total energy + Delta-G solvation = -4358.155086 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.86386 -42.09639 -40.08798 -39.64927 -37.61095 -36.34414 -35.81210 -35.48145 -33.90864 -31.65409 -31.49443 -30.10183 -29.26596 -28.00568 -27.63156 -25.43642 -24.46807 -24.16447 -23.42666 -23.00968 -21.40678 -20.79982 -20.24332 -19.38195 -18.91961 -18.27487 -18.13968 -17.79639 -17.02823 -16.67241 -16.58197 -16.39109 -16.22526 -15.94448 -15.85789 -15.52702 -15.07629 -14.84188 -14.72334 -14.56969 -14.24994 -13.90390 -13.82286 -13.73513 -13.44761 -13.37876 -13.23448 -13.08089 -13.03079 -12.80113 -12.37739 -12.29191 -12.18146 -12.11888 -11.97988 -11.76413 -11.58766 -11.39430 -11.23554 -11.08435 -11.03962 -10.93269 -10.74847 -10.69273 -9.94862 -8.52785 -8.29735 -6.51200 0.06860 0.74060 0.88971 1.27459 1.33526 1.36709 1.45885 1.79624 1.91321 2.29833 2.43680 2.46396 2.96555 3.18687 3.48849 3.80212 3.90918 4.07014 4.15610 4.21609 4.31486 4.38320 4.39420 4.41155 4.44374 4.46405 4.54878 4.60058 4.64819 4.65607 4.71655 4.78885 4.82914 4.85467 4.90005 5.03174 5.10244 5.18812 5.23968 5.30588 5.31234 5.40495 5.45170 5.49103 5.56694 5.60663 5.71963 5.79062 5.99106 6.12098 6.36411 6.47381 6.61996 6.81018 7.01803 7.19311 8.71934 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.006350 B = 0.004862 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4408.529161 B = 5757.086559 C = 9468.426102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.505 5.505 3 C 0.339 3.661 4 N -0.535 5.535 5 C 0.549 3.451 6 N -0.690 5.690 7 C 0.171 3.829 8 C -0.125 4.125 9 C -0.110 4.110 10 C -0.119 4.119 11 C -0.109 4.109 12 C -0.125 4.125 13 N -0.434 5.434 14 C 0.262 3.738 15 C -0.546 4.546 16 H 0.048 0.952 17 C 0.027 3.973 18 N -0.915 5.915 19 Si 0.965 3.035 20 H -0.282 1.282 21 H -0.269 1.269 22 H -0.266 1.266 23 C -0.201 4.201 24 C 0.581 3.419 25 O -0.545 6.545 26 N -0.555 5.555 27 C 0.083 3.917 28 C 0.710 3.290 29 O -0.558 6.558 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.415 0.585 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.024 0.976 46 H 0.047 0.953 47 H 0.272 0.728 48 H 0.118 0.882 49 H 0.083 0.917 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.154 3.908 -2.762 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.233 5.233 3 C 0.105 3.895 4 N -0.270 5.270 5 C 0.195 3.805 6 N -0.331 5.331 7 C 0.067 3.933 8 C -0.165 4.165 9 C -0.148 4.148 10 C -0.156 4.156 11 C -0.147 4.147 12 C -0.164 4.164 13 N -0.123 5.123 14 C 0.142 3.858 15 C -0.584 4.584 16 H 0.067 0.933 17 C -0.175 4.175 18 N -0.553 5.553 19 Si 0.789 3.211 20 H -0.208 1.208 21 H -0.193 1.193 22 H -0.190 1.190 23 C -0.317 4.317 24 C 0.379 3.621 25 O -0.424 6.424 26 N -0.300 5.300 27 C -0.057 4.057 28 C 0.412 3.588 29 O -0.434 6.434 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.253 0.747 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.136 0.864 49 H 0.101 0.899 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.454 3.651 -2.814 19.021 hybrid contribution 2.338 -0.140 0.702 2.445 sum -16.116 3.511 -2.112 16.629 Atomic orbital electron populations 1.22159 0.72588 1.05756 1.04688 1.43878 1.09738 1.00047 1.69643 1.17798 0.86370 0.87472 0.97907 1.69602 1.25733 0.97370 1.34296 1.19274 0.80459 0.86661 0.94130 1.43748 1.10999 0.97394 1.80996 1.21092 0.82536 0.92404 0.97235 1.21925 0.98213 1.00411 0.95905 1.21460 0.95717 0.96022 1.01582 1.21571 1.01794 0.96618 0.95638 1.21468 0.95128 1.00541 0.97567 1.21831 0.99681 0.93772 1.01075 1.45146 1.08422 1.02893 1.55843 1.19300 0.73507 0.94923 0.98070 1.21281 0.99174 1.46604 0.91333 0.93344 1.25650 0.95938 0.94101 1.01795 1.69998 1.07966 1.44427 1.32865 0.85456 0.78448 0.77994 0.79201 1.20817 1.19317 1.19008 1.18576 0.93614 0.86928 1.32564 1.15590 0.86568 0.83113 0.76874 1.90922 1.13858 1.87400 1.50181 1.45913 1.06096 1.10003 1.67951 1.22061 0.98404 0.80967 1.04251 1.15451 0.81337 0.83599 0.78370 1.90935 1.65961 1.29295 1.57163 0.87495 0.89525 0.89195 0.74695 0.90036 0.92125 0.93100 0.91485 0.91119 0.90477 0.91888 0.91373 0.90398 0.91769 0.90985 0.95759 0.93509 0.91872 0.86360 0.89870 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.94 10.62 127.77 1.36 3.30 16 2 N -0.51 -16.08 3.06 -678.17 -2.07 -18.16 16 3 C 0.34 12.68 7.68 132.90 1.02 13.70 16 4 N -0.54 -19.04 10.53 -194.28 -2.05 -21.09 16 5 C 0.55 20.85 8.42 260.63 2.19 23.04 16 6 N -0.69 -21.36 5.19 -328.98 -1.71 -23.07 16 7 C 0.17 3.98 2.58 44.99 0.12 4.09 16 8 C -0.13 -2.61 5.50 30.59 0.17 -2.44 16 9 C -0.11 -1.67 5.92 30.59 0.18 -1.49 16 10 C -0.12 -1.53 5.92 30.60 0.18 -1.34 16 11 C -0.11 -1.53 5.93 30.61 0.18 -1.35 16 12 C -0.13 -2.36 5.39 30.61 0.17 -2.20 16 13 N -0.43 -19.67 2.82 -521.45 -1.47 -21.13 16 14 C 0.26 13.50 5.49 85.63 0.47 13.97 16 15 C -0.55 -30.11 9.39 25.60 0.24 -29.87 16 16 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 17 C 0.03 1.45 5.46 84.66 0.46 1.92 16 18 N -0.91 -51.88 13.29 21.45 0.28 -51.60 16 19 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 C -0.20 -8.93 6.91 38.81 0.27 -8.66 16 24 C 0.58 25.96 7.42 84.80 0.63 26.59 16 25 O -0.55 -28.34 15.99 -4.92 -0.08 -28.42 16 26 N -0.56 -20.18 2.96 -807.41 -2.39 -22.57 16 27 C 0.08 2.38 9.99 127.77 1.28 3.66 16 28 C 0.71 24.00 8.12 179.21 1.45 25.46 16 29 O -0.56 -18.53 14.77 -4.03 -0.06 -18.59 16 30 H 0.11 2.17 6.85 -2.39 -0.02 2.15 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.42 13.18 7.79 -92.71 -0.72 12.46 16 34 H 0.08 2.04 7.76 -2.39 -0.02 2.02 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.02 1.44 7.28 -2.38 -0.02 1.43 16 46 H 0.05 2.35 7.47 -2.39 -0.02 2.33 16 47 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 48 H 0.12 2.88 6.80 -2.39 -0.02 2.87 16 49 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -69.70 404.26 3.11 -66.59 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.25 Total: 24.29 kcal Atomic # 6 Polarization: 58.02 SS G_CDS: 10.37 Total: 68.39 kcal Atomic # 7 Polarization: -148.22 SS G_CDS: -9.40 Total: -157.62 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -0.14 Total: -47.01 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -69.70 3.11 -66.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002427557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.281 kcal (2) G-P(sol) polarization free energy of solvation -69.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds