Wall clock time and date at job start Tue Mar 31 2020 05:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38283 * 119.92878 * 2 1 4 4 C 1.38106 * 120.07354 * 180.02562 * 3 2 1 5 5 C 1.38869 * 119.92510 * 0.22717 * 4 3 2 6 6 N 1.39932 * 120.06903 * 179.72527 * 5 4 3 7 7 C 1.46502 * 119.99762 * 67.87910 * 6 5 4 8 8 C 1.50700 * 109.47139 * 90.00271 * 7 6 5 9 9 H 1.08000 * 119.99916 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00272 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99639 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00223 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47178 * 90.00351 * 12 10 8 14 14 H 1.48504 * 109.47034 * 209.99984 * 12 10 8 15 15 H 1.48498 * 109.46885 * 329.99998 * 12 10 8 16 16 C 1.34779 * 120.00300 * 247.87831 * 6 5 4 17 17 O 1.21291 * 119.99540 * 4.73434 * 16 6 5 18 18 C 1.50697 * 120.00017 * 184.73263 * 16 6 5 19 19 O 1.42906 * 109.46655 * 180.02562 * 18 16 6 20 20 C 1.34945 * 116.99655 * 180.02562 * 19 18 16 21 21 O 1.21664 * 120.00070 * 359.97438 * 20 19 18 22 22 C 1.46168 * 119.99924 * 179.97438 * 20 19 18 23 23 C 1.34110 * 119.24071 * 0.02562 * 22 20 19 24 24 O 1.34960 * 121.67681 * 180.34224 * 23 22 20 25 25 C 1.43244 * 116.76797 * 342.80585 * 24 23 22 26 26 C 1.53551 * 108.09245 * 45.51568 * 25 24 23 27 27 O 1.36221 * 119.24494 * 179.72495 * 22 20 19 28 28 C 1.38868 * 119.86207 * 359.49733 * 5 4 3 29 29 C 1.38118 * 119.92974 * 0.50418 * 28 5 4 30 30 H 1.08995 * 109.46855 * 90.00313 * 1 2 3 31 31 H 1.09005 * 109.46361 * 210.00016 * 1 2 3 32 32 H 1.08998 * 109.47145 * 329.99652 * 1 2 3 33 33 H 1.08003 * 119.96460 * 359.97438 * 3 2 1 34 34 H 1.07995 * 120.03834 * 179.97438 * 4 3 2 35 35 H 1.09001 * 109.47108 * 209.99988 * 7 6 5 36 36 H 1.08994 * 109.47001 * 330.00183 * 7 6 5 37 37 H 0.96997 * 119.99850 * 179.97438 * 11 10 8 38 38 H 1.08991 * 109.47168 * 300.00166 * 18 16 6 39 39 H 1.08999 * 109.47178 * 60.00178 * 18 16 6 40 40 H 1.07995 * 119.15955 * 0.32156 * 23 22 20 41 41 H 1.08996 * 109.74013 * 165.16180 * 25 24 23 42 42 H 1.08998 * 109.74166 * 285.87009 * 25 24 23 43 43 H 1.09007 * 109.75776 * 61.44612 * 26 25 24 44 44 H 1.09003 * 109.75227 * 182.18215 * 26 25 24 45 45 H 1.08005 * 120.03960 * 180.22621 * 28 5 4 46 46 H 1.07994 * 119.96482 * 179.74839 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0058 6 7 5.6732 0.0002 -0.0122 7 6 6.4109 0.4759 1.1607 8 6 6.6664 -0.6782 2.0955 9 1 6.3141 -1.6670 1.8415 10 6 7.3500 -0.4718 3.2749 11 7 7.7795 0.7323 3.5839 12 14 7.6660 -1.9022 4.4340 13 1 8.9590 -2.5445 4.0865 14 1 7.7209 -1.4038 5.8318 15 1 6.5695 -2.8953 4.3051 16 6 6.3422 -0.4374 -1.0973 17 8 5.7343 -0.7502 -2.0992 18 6 7.8455 -0.5380 -1.0658 19 8 8.3169 -1.0224 -2.3249 20 6 9.6509 -1.1716 -2.4632 21 8 10.3929 -0.8970 -1.5390 22 6 10.2045 -1.6632 -3.7236 23 6 9.3727 -1.9609 -4.7326 24 8 9.8299 -2.4246 -5.9146 25 6 11.2228 -2.2321 -6.1880 26 6 12.0138 -2.6231 -4.9313 27 8 11.5538 -1.8027 -3.8484 28 6 3.5781 -1.2017 0.0000 29 6 2.1970 -1.1984 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3632 -0.8901 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6552 2.1328 -0.0004 34 1 4.1163 2.1382 -0.0010 35 1 7.3619 0.9034 0.8429 36 1 5.8241 1.2369 1.6749 37 1 8.2601 0.8776 4.4139 38 1 8.2715 0.4465 -0.8730 39 1 8.1471 -1.2255 -0.2755 40 1 8.3099 -1.8264 -4.5955 41 1 11.5245 -2.8631 -7.0239 42 1 11.4094 -1.1858 -6.4296 43 1 11.8427 -3.6746 -4.7005 44 1 13.0772 -2.4499 -5.0967 45 1 4.1164 -2.1380 -0.0005 46 1 1.6553 -2.1327 0.0009 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003536382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:13 Heat of formation + Delta-G solvation = -137.243824 kcal Electronic energy + Delta-G solvation = -31990.447916 eV Core-core repulsion = 27426.153238 eV Total energy + Delta-G solvation = -4564.294678 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.32789 -40.35057 -39.67596 -38.17731 -37.33845 -36.11074 -35.25493 -32.90969 -32.54783 -31.58773 -30.59203 -29.63152 -28.24366 -27.51530 -25.81904 -25.45194 -23.27726 -22.64976 -22.17271 -21.29045 -19.99477 -19.18396 -18.65343 -18.29187 -17.10056 -16.95582 -16.52334 -16.46554 -16.31234 -15.81288 -15.21402 -15.17014 -15.07008 -14.99084 -14.51711 -14.45387 -14.15619 -13.98191 -13.80281 -13.55266 -13.10615 -13.05808 -12.81694 -12.49655 -12.39179 -12.22209 -12.08006 -11.75819 -11.51917 -11.33568 -11.31342 -11.04782 -10.99678 -10.85315 -10.75517 -10.43481 -10.35012 -10.25278 -9.90255 -9.34511 -8.63122 -8.54492 -8.54049 -8.47308 -7.69671 -6.24693 -4.33267 1.03162 1.64303 1.79922 2.03449 2.79376 2.99077 3.04733 3.22540 3.29661 3.31768 3.37541 3.91679 3.96583 4.11402 4.30449 4.50631 4.59756 4.68044 4.98783 4.99780 5.09181 5.11541 5.12343 5.14564 5.16069 5.35398 5.49943 5.54674 5.66972 5.69284 5.76831 5.78299 5.87005 6.03190 6.08961 6.38634 6.41308 6.52253 6.56965 6.75076 6.88915 6.89970 7.03897 7.06112 7.18776 7.52980 7.68833 7.87396 7.92065 8.00564 8.63388 8.77979 9.35318 10.82435 Molecular weight = 361.14amu Principal moments of inertia in cm(-1) A = 0.007960 B = 0.003036 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3516.809271 B = 9219.282516 C =11965.665567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.103 4.103 3 C -0.113 4.113 4 C -0.118 4.118 5 C 0.170 3.830 6 N -0.555 5.555 7 C 0.234 3.766 8 C -0.546 4.546 9 H 0.063 0.937 10 C 0.070 3.930 11 N -0.887 5.887 12 Si 0.898 3.102 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.526 3.474 17 O -0.539 6.539 18 C 0.059 3.941 19 O -0.330 6.330 20 C 0.521 3.479 21 O -0.483 6.483 22 C -0.070 4.070 23 C 0.052 3.948 24 O -0.298 6.298 25 C 0.011 3.989 26 C 0.021 3.979 27 O -0.287 6.287 28 C -0.101 4.101 29 C -0.113 4.113 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.267 0.733 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.200 0.800 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 -3.323 -15.496 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.103 4.103 3 C -0.131 4.131 4 C -0.137 4.137 5 C 0.080 3.920 6 N -0.284 5.284 7 C 0.116 3.884 8 C -0.584 4.584 9 H 0.081 0.919 10 C -0.135 4.135 11 N -0.524 5.524 12 Si 0.725 3.275 13 H -0.203 1.203 14 H -0.209 1.209 15 H -0.197 1.197 16 C 0.314 3.686 17 O -0.417 6.417 18 C -0.018 4.018 19 O -0.247 6.247 20 C 0.365 3.635 21 O -0.370 6.370 22 C -0.116 4.116 23 C -0.014 4.014 24 O -0.209 6.209 25 C -0.065 4.065 26 C -0.055 4.055 27 O -0.202 6.202 28 C -0.120 4.120 29 C -0.131 4.131 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.135 0.865 40 H 0.216 0.784 41 H 0.141 0.859 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.781 -3.284 -15.593 15.954 hybrid contribution 0.662 -0.682 1.082 1.441 sum -0.119 -3.966 -14.511 15.044 Atomic orbital electron populations 1.20722 0.91578 1.02367 1.01822 1.19817 0.95730 0.93238 1.01524 1.20768 0.93422 0.97334 1.01623 1.21173 0.94201 0.97415 1.00948 1.17483 0.82858 0.92999 0.98694 1.45778 1.03600 1.62385 1.16605 1.19689 0.91712 0.95961 0.81024 1.21395 1.37455 0.95067 1.04490 0.91851 1.24917 0.94898 0.96039 0.97601 1.69907 1.37126 1.20692 1.24707 0.86489 0.78918 0.82191 0.79945 1.20257 1.20924 1.19681 1.19846 0.88424 0.77391 0.82922 1.90673 1.69781 1.49368 1.31860 1.22476 0.92656 1.02987 0.83643 1.86022 1.22592 1.77672 1.38372 1.19707 0.80949 0.76319 0.86541 1.90964 1.59733 1.45623 1.40685 1.18979 0.84701 1.14665 0.93287 1.23731 1.00030 0.94948 0.82667 1.86141 1.26061 1.74749 1.33991 1.23787 0.80101 1.03791 0.98790 1.23708 1.00440 0.95414 0.85948 1.86441 1.16682 1.66960 1.50135 1.21213 0.94069 0.97632 0.99134 1.20808 0.93522 0.97355 1.01431 0.91628 0.91865 0.91858 0.86186 0.85923 0.93948 0.93751 0.92293 0.87983 0.86461 0.78372 0.85932 0.89771 0.90240 0.85832 0.86163 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.10 -1.49 5.88 -104.59 -0.62 -2.10 16 3 C -0.11 -1.70 9.69 -39.61 -0.38 -2.08 16 4 C -0.12 -2.08 9.69 -39.40 -0.38 -2.46 16 5 C 0.17 3.40 4.75 -83.69 -0.40 3.01 16 6 N -0.55 -11.75 2.51 -114.74 -0.29 -12.04 16 7 C 0.23 5.48 4.88 -5.19 -0.03 5.45 16 8 C -0.55 -14.02 9.16 -34.44 -0.32 -14.34 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 11 N -0.89 -24.35 13.29 55.43 0.74 -23.62 16 12 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 C 0.53 10.96 7.60 -10.99 -0.08 10.88 16 17 O -0.54 -12.00 16.26 -14.36 -0.23 -12.24 16 18 C 0.06 1.14 4.52 36.00 0.16 1.30 16 19 O -0.33 -5.89 8.66 -47.93 -0.41 -6.31 16 20 C 0.52 9.16 7.84 33.91 0.27 9.43 16 21 O -0.48 -10.04 16.69 -24.95 -0.42 -10.45 16 22 C -0.07 -1.01 6.61 -37.85 -0.25 -1.26 16 23 C 0.05 0.63 10.62 29.28 0.31 0.94 16 24 O -0.30 -3.07 10.47 -30.68 -0.32 -3.39 16 25 C 0.01 0.07 7.29 37.44 0.27 0.35 16 26 C 0.02 0.17 7.32 37.44 0.27 0.44 16 27 O -0.29 -3.94 10.29 -45.81 -0.47 -4.41 16 28 C -0.10 -1.89 9.56 -39.39 -0.38 -2.27 16 29 C -0.11 -1.77 9.69 -39.61 -0.38 -2.15 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.04 1.01 6.47 -51.93 -0.34 0.67 16 36 H 0.04 1.09 7.86 -51.93 -0.41 0.68 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.10 1.91 7.24 -51.93 -0.38 1.53 16 39 H 0.12 2.38 7.90 -51.93 -0.41 1.97 16 40 H 0.20 2.27 7.33 -52.49 -0.38 1.89 16 41 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 44 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.12 2.28 8.06 -52.48 -0.42 1.85 16 46 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -33.00 401.61 -8.15 -41.15 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.10 Total: 3.50 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -1.66 Total: 6.08 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.45 Total: -35.65 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.86 Total: -36.80 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.00 -8.15 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003536382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.097 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds