Wall clock time and date at job start Tue Mar 31 2020 05:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38283 * 119.92878 * 2 1 4 4 C 1.38106 * 120.07354 * 180.02562 * 3 2 1 5 5 C 1.38869 * 119.92510 * 0.22717 * 4 3 2 6 6 N 1.39932 * 120.06903 * 179.72527 * 5 4 3 7 7 C 1.46502 * 119.99762 * 67.87910 * 6 5 4 8 8 C 1.50700 * 109.47139 * 90.00271 * 7 6 5 9 9 H 1.08000 * 119.99916 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00272 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99639 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00223 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47178 * 90.00351 * 12 10 8 14 14 H 1.48504 * 109.47034 * 209.99984 * 12 10 8 15 15 H 1.48498 * 109.46885 * 329.99998 * 12 10 8 16 16 C 1.34779 * 120.00300 * 247.87831 * 6 5 4 17 17 O 1.21291 * 119.99540 * 4.73434 * 16 6 5 18 18 C 1.50697 * 120.00017 * 184.73263 * 16 6 5 19 19 O 1.42906 * 109.46655 * 180.02562 * 18 16 6 20 20 C 1.34945 * 116.99655 * 180.02562 * 19 18 16 21 21 O 1.21664 * 120.00070 * 359.97438 * 20 19 18 22 22 C 1.46168 * 119.99924 * 179.97438 * 20 19 18 23 23 C 1.34110 * 119.24071 * 0.02562 * 22 20 19 24 24 O 1.34960 * 121.67681 * 180.34224 * 23 22 20 25 25 C 1.43244 * 116.76797 * 342.80585 * 24 23 22 26 26 C 1.53551 * 108.09245 * 45.51568 * 25 24 23 27 27 O 1.36221 * 119.24494 * 179.72495 * 22 20 19 28 28 C 1.38868 * 119.86207 * 359.49733 * 5 4 3 29 29 C 1.38118 * 119.92974 * 0.50418 * 28 5 4 30 30 H 1.08995 * 109.46855 * 90.00313 * 1 2 3 31 31 H 1.09005 * 109.46361 * 210.00016 * 1 2 3 32 32 H 1.08998 * 109.47145 * 329.99652 * 1 2 3 33 33 H 1.08003 * 119.96460 * 359.97438 * 3 2 1 34 34 H 1.07995 * 120.03834 * 179.97438 * 4 3 2 35 35 H 1.09001 * 109.47108 * 209.99988 * 7 6 5 36 36 H 1.08994 * 109.47001 * 330.00183 * 7 6 5 37 37 H 0.96997 * 119.99850 * 179.97438 * 11 10 8 38 38 H 1.08991 * 109.47168 * 300.00166 * 18 16 6 39 39 H 1.08999 * 109.47178 * 60.00178 * 18 16 6 40 40 H 1.07995 * 119.15955 * 0.32156 * 23 22 20 41 41 H 1.08996 * 109.74013 * 165.16180 * 25 24 23 42 42 H 1.08998 * 109.74166 * 285.87009 * 25 24 23 43 43 H 1.09007 * 109.75776 * 61.44612 * 26 25 24 44 44 H 1.09003 * 109.75227 * 182.18215 * 26 25 24 45 45 H 1.08005 * 120.03960 * 180.22621 * 28 5 4 46 46 H 1.07994 * 119.96482 * 179.74839 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0058 6 7 5.6732 0.0002 -0.0122 7 6 6.4109 0.4759 1.1607 8 6 6.6664 -0.6782 2.0955 9 1 6.3141 -1.6670 1.8415 10 6 7.3500 -0.4718 3.2749 11 7 7.7795 0.7323 3.5839 12 14 7.6660 -1.9022 4.4340 13 1 8.9590 -2.5445 4.0865 14 1 7.7209 -1.4038 5.8318 15 1 6.5695 -2.8953 4.3051 16 6 6.3422 -0.4374 -1.0973 17 8 5.7343 -0.7502 -2.0992 18 6 7.8455 -0.5380 -1.0658 19 8 8.3169 -1.0224 -2.3249 20 6 9.6509 -1.1716 -2.4632 21 8 10.3929 -0.8970 -1.5390 22 6 10.2045 -1.6632 -3.7236 23 6 9.3727 -1.9609 -4.7326 24 8 9.8299 -2.4246 -5.9146 25 6 11.2228 -2.2321 -6.1880 26 6 12.0138 -2.6231 -4.9313 27 8 11.5538 -1.8027 -3.8484 28 6 3.5781 -1.2017 0.0000 29 6 2.1970 -1.1984 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3632 -0.8901 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6552 2.1328 -0.0004 34 1 4.1163 2.1382 -0.0010 35 1 7.3619 0.9034 0.8429 36 1 5.8241 1.2369 1.6749 37 1 8.2601 0.8776 4.4139 38 1 8.2715 0.4465 -0.8730 39 1 8.1471 -1.2255 -0.2755 40 1 8.3099 -1.8264 -4.5955 41 1 11.5245 -2.8631 -7.0239 42 1 11.4094 -1.1858 -6.4296 43 1 11.8427 -3.6746 -4.7005 44 1 13.0772 -2.4499 -5.0967 45 1 4.1164 -2.1380 -0.0005 46 1 1.6553 -2.1327 0.0009 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003536382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:12 Heat of formation + Delta-G solvation = -155.090943 kcal Electronic energy + Delta-G solvation = -31991.221825 eV Core-core repulsion = 27426.153238 eV Total energy + Delta-G solvation = -4565.068587 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.36985 -41.75040 -41.07658 -39.58034 -38.32551 -37.51448 -36.94101 -34.78224 -33.53148 -32.92188 -31.88397 -30.64711 -29.48781 -29.38416 -26.97319 -26.43505 -25.12897 -23.83672 -23.54572 -22.60202 -21.01777 -20.68049 -19.63900 -19.38433 -18.83740 -18.43713 -18.01792 -17.89111 -17.75655 -17.13710 -16.60203 -16.41926 -16.36716 -16.08821 -15.89196 -15.51982 -15.40639 -15.26337 -14.83966 -14.55582 -14.49472 -14.39933 -14.32804 -14.08498 -13.88510 -13.55139 -13.23101 -13.11012 -12.97945 -12.78905 -12.66472 -12.48316 -12.25552 -12.12527 -12.07094 -11.99963 -11.86514 -11.75380 -11.45625 -11.05131 -10.65628 -10.11337 -9.85143 -9.46092 -9.17227 -8.27697 -6.42742 -0.10518 0.31457 0.49413 0.77904 1.35617 1.37821 1.41136 1.49165 1.63751 2.03047 2.07348 2.35796 2.71902 2.81825 3.03915 3.31852 3.39626 3.56585 3.88435 3.92428 3.96622 3.96997 4.06749 4.09663 4.09967 4.23261 4.42112 4.47304 4.51943 4.54858 4.61374 4.77494 4.84608 4.87025 4.94337 4.99928 5.07017 5.15722 5.20765 5.40818 5.51994 5.64734 5.65181 5.68883 5.73182 5.93293 6.06661 6.13183 6.27201 6.55422 6.66482 7.03686 7.29329 8.78423 Molecular weight = 361.14amu Principal moments of inertia in cm(-1) A = 0.007960 B = 0.003036 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3516.809271 B = 9219.282516 C =11965.665567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.095 4.095 3 C -0.110 4.110 4 C -0.133 4.133 5 C 0.127 3.873 6 N -0.552 5.552 7 C 0.250 3.750 8 C -0.552 4.552 9 H 0.055 0.945 10 C 0.025 3.975 11 N -0.916 5.916 12 Si 0.955 3.045 13 H -0.276 1.276 14 H -0.277 1.277 15 H -0.268 1.268 16 C 0.527 3.473 17 O -0.555 6.555 18 C 0.067 3.933 19 O -0.327 6.327 20 C 0.521 3.479 21 O -0.527 6.527 22 C -0.097 4.097 23 C 0.092 3.908 24 O -0.298 6.298 25 C 0.007 3.993 26 C 0.012 3.988 27 O -0.317 6.317 28 C -0.123 4.123 29 C -0.114 4.114 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.034 0.966 36 H 0.030 0.970 37 H 0.270 0.730 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.203 0.797 41 H 0.164 0.836 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.155 0.845 45 H 0.105 0.895 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 -4.176 -17.027 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.152 4.152 5 C 0.037 3.963 6 N -0.280 5.280 7 C 0.131 3.869 8 C -0.590 4.590 9 H 0.074 0.926 10 C -0.176 4.176 11 N -0.554 5.554 12 Si 0.780 3.220 13 H -0.202 1.202 14 H -0.202 1.202 15 H -0.193 1.193 16 C 0.315 3.685 17 O -0.434 6.434 18 C -0.010 4.010 19 O -0.243 6.243 20 C 0.368 3.632 21 O -0.417 6.417 22 C -0.144 4.144 23 C 0.025 3.975 24 O -0.209 6.209 25 C -0.067 4.067 26 C -0.062 4.062 27 O -0.234 6.234 28 C -0.143 4.143 29 C -0.132 4.132 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.172 0.828 34 H 0.141 0.859 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.219 0.781 41 H 0.181 0.819 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.172 0.828 45 H 0.123 0.877 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.354 -4.150 -17.159 17.810 hybrid contribution 1.086 -0.453 1.380 1.814 sum -1.268 -4.603 -15.779 16.486 Atomic orbital electron populations 1.20809 0.88166 1.03927 1.03317 1.20342 0.98102 0.92297 0.98772 1.21188 0.92341 0.99267 1.00021 1.21353 0.95673 0.96640 1.01539 1.17861 0.82146 0.94523 1.01807 1.45647 1.04529 1.62067 1.15775 1.19316 0.91258 0.94903 0.81438 1.21585 1.37142 0.95257 1.05039 0.92650 1.25626 0.94747 0.98196 0.99010 1.69992 1.37894 1.22247 1.25285 0.85598 0.78673 0.79490 0.78286 1.20167 1.20177 1.19270 1.19992 0.88798 0.77048 0.82663 1.90637 1.70220 1.50270 1.32235 1.22242 0.91911 1.02707 0.84136 1.86038 1.23321 1.77652 1.37322 1.20368 0.80207 0.75261 0.87406 1.90929 1.60313 1.48078 1.42393 1.18613 0.85705 1.17644 0.92398 1.23754 0.99808 0.91448 0.82519 1.86152 1.28462 1.73713 1.32606 1.24197 0.77709 1.05412 0.99375 1.24130 1.02213 0.95037 0.84860 1.86385 1.16027 1.68377 1.52593 1.21275 0.95644 0.96610 1.00757 1.21159 0.92301 0.99370 1.00388 0.89962 0.90529 0.90195 0.82829 0.85894 0.94774 0.95220 0.92118 0.87883 0.87904 0.78055 0.81853 0.88912 0.89751 0.82781 0.87682 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.01 71.24 0.71 -1.09 16 2 C -0.09 -2.50 5.88 -19.84 -0.12 -2.61 16 3 C -0.11 -3.10 9.69 22.25 0.22 -2.88 16 4 C -0.13 -4.73 9.69 22.39 0.22 -4.51 16 5 C 0.13 5.22 4.75 38.15 0.18 5.41 16 6 N -0.55 -24.61 2.51 -635.30 -1.59 -26.20 16 7 C 0.25 12.33 4.88 85.63 0.42 12.75 16 8 C -0.55 -29.44 9.16 25.60 0.23 -29.21 16 9 H 0.06 2.99 7.81 -2.91 -0.02 2.96 16 10 C 0.03 1.37 5.46 84.65 0.46 1.83 16 11 N -0.92 -51.51 13.29 21.45 0.28 -51.22 16 12 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 C 0.53 23.09 7.60 87.66 0.67 23.76 16 17 O -0.55 -25.58 16.26 15.97 0.26 -25.32 16 18 C 0.07 2.76 4.52 71.23 0.32 3.09 16 19 O -0.33 -12.28 8.66 -52.14 -0.45 -12.73 16 20 C 0.52 19.26 7.84 69.88 0.55 19.81 16 21 O -0.53 -23.29 16.69 24.61 0.41 -22.88 16 22 C -0.10 -2.85 6.61 23.39 0.15 -2.69 16 23 C 0.09 2.13 10.62 66.88 0.71 2.84 16 24 O -0.30 -5.46 10.47 -68.83 -0.72 -6.18 16 25 C 0.01 0.08 7.29 72.17 0.53 0.60 16 26 C 0.01 0.17 7.32 72.17 0.53 0.70 16 27 O -0.32 -8.70 10.29 -71.81 -0.74 -9.44 16 28 C -0.12 -4.72 9.56 22.39 0.21 -4.50 16 29 C -0.11 -3.42 9.69 22.25 0.22 -3.20 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.14 8.08 -2.38 -0.02 1.12 16 32 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 33 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.03 1.73 6.47 -2.39 -0.02 1.71 16 36 H 0.03 1.54 7.86 -2.39 -0.02 1.52 16 37 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.10 4.17 7.24 -2.39 -0.02 4.15 16 39 H 0.10 4.52 7.90 -2.39 -0.02 4.50 16 40 H 0.20 4.49 7.33 -2.91 -0.02 4.47 16 41 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 43 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 46 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -74.66 401.61 6.69 -67.96 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 1.01 Total: 20.81 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 6.21 Total: 20.07 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -1.31 Total: -77.43 kcal Atomic # 8 Polarization: -75.30 SS G_CDS: -1.24 Total: -76.54 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -74.66 6.69 -67.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003536382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.130 kcal (2) G-P(sol) polarization free energy of solvation -74.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds