Wall clock time and date at job start Tue Mar 31 2020 04:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39672 * 120.00045 * 2 1 4 4 C 1.38914 * 120.07002 * 119.60749 * 3 2 1 5 5 C 1.38105 * 119.91987 * 179.77166 * 4 3 2 6 6 C 1.38277 * 120.07889 * 0.50868 * 5 4 3 7 7 C 1.38292 * 120.14903 * 359.74809 * 6 5 4 8 8 C 1.38098 * 120.07286 * 359.97438 * 7 6 5 9 9 S 1.65603 * 119.99903 * 180.02562 * 2 1 3 10 10 O 1.42094 * 106.40318 * 330.86955 * 9 2 1 11 11 O 1.42095 * 106.40047 * 197.94450 * 9 2 1 12 12 C 1.76200 * 107.21478 * 84.40657 * 9 2 1 13 13 C 1.38403 * 119.92695 * 269.72098 * 12 9 2 14 14 C 1.38355 * 120.31377 * 180.27900 * 13 12 9 15 15 C 1.37956 * 120.15187 * 0.02562 * 14 13 12 16 16 C 1.39646 * 119.84534 * 0.02562 * 15 14 13 17 17 C 1.47658 * 120.15174 * 180.02562 * 16 15 14 18 18 O 1.21514 * 120.00094 * 179.97438 * 17 16 15 19 19 O 1.34734 * 120.00160 * 359.97438 * 17 16 15 20 20 C 1.34850 * 116.99780 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00704 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99615 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99993 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99694 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47248 * 60.00752 * 24 22 20 26 26 H 1.48501 * 109.46725 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47008 * 300.00243 * 24 22 20 28 28 C 1.37917 * 119.92215 * 90.00169 * 12 9 2 29 29 H 1.09002 * 109.47031 * 269.99442 * 1 2 3 30 30 H 1.08995 * 109.46997 * 29.99153 * 1 2 3 31 31 H 1.08997 * 109.47403 * 150.00151 * 1 2 3 32 32 H 1.08003 * 120.03726 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.96084 * 180.25518 * 5 4 3 34 34 H 1.08001 * 119.93115 * 179.72068 * 6 5 4 35 35 H 1.07997 * 119.96223 * 179.97438 * 7 6 5 36 36 H 1.08006 * 120.03849 * 179.97438 * 8 7 6 37 37 H 1.07997 * 119.83747 * 0.25794 * 13 12 9 38 38 H 1.07997 * 119.92498 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.07448 * 180.02562 * 15 14 13 40 40 H 0.97003 * 119.99828 * 179.97438 * 23 22 20 41 41 H 1.07995 * 120.07828 * 359.69787 * 28 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 3.0258 1.5154 1.0452 5 6 3.7184 2.7102 1.0397 6 6 3.5462 3.6063 0.0007 7 6 2.6844 3.3073 -1.0387 8 6 1.9931 2.1119 -1.0424 9 16 2.2930 -1.4342 -0.0006 10 8 1.4625 -2.3773 0.6625 11 8 3.6167 -1.1334 0.4195 12 6 2.4117 -1.9671 -1.6759 13 6 1.4273 -2.7776 -2.2141 14 6 1.5154 -3.2054 -3.5269 15 6 2.5870 -2.8265 -4.3087 16 6 3.5845 -2.0098 -3.7720 17 6 4.7341 -1.5998 -4.6030 18 8 5.6003 -0.8886 -4.1333 19 8 4.8228 -2.0141 -5.8819 20 6 5.8980 -1.6042 -6.5851 21 1 6.6396 -0.9727 -6.1187 22 6 6.0521 -1.9949 -7.9082 23 7 5.1499 -2.7637 -8.4756 24 14 7.5411 -1.4264 -8.8825 25 1 8.7796 -1.9082 -8.2198 26 1 7.4704 -1.9762 -10.2602 27 1 7.5566 0.0573 -8.9423 28 6 3.4883 -1.5803 -2.4463 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3634 -0.8900 -0.5138 32 1 3.1576 0.8178 1.8591 33 1 4.3922 2.9468 1.8500 34 1 4.0856 4.5420 0.0011 35 1 2.5519 4.0095 -1.8484 36 1 1.3199 1.8791 -1.8542 37 1 0.5866 -3.0777 -1.6062 38 1 0.7434 -3.8373 -3.9405 39 1 2.6543 -3.1609 -5.3335 40 1 5.2574 -3.0363 -9.4003 41 1 4.2556 -0.9476 -2.0253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003564790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:09 Heat of formation + Delta-G solvation = -83.989963 kcal Electronic energy + Delta-G solvation = -29547.577131 eV Core-core repulsion = 25292.511490 eV Total energy + Delta-G solvation = -4255.065641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.086 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -39.65704 -39.64301 -38.26290 -37.39208 -36.08873 -35.95464 -35.26407 -32.36207 -31.40178 -31.08658 -31.01106 -30.08455 -26.46562 -25.83127 -23.73107 -23.13201 -22.86240 -22.23769 -20.64612 -19.34974 -18.31765 -17.85062 -17.78980 -17.14043 -16.33389 -16.20636 -16.02423 -15.39598 -15.27431 -14.81235 -14.67318 -14.66484 -14.32465 -14.15968 -13.88142 -13.79765 -13.54698 -13.25604 -12.79917 -12.76772 -12.68405 -12.28958 -12.20254 -12.14772 -12.08343 -11.80644 -11.52584 -11.46639 -11.36580 -11.31410 -10.80641 -10.57257 -10.54412 -9.99435 -9.97010 -9.37219 -9.22350 -9.05920 -8.93614 -8.70829 -8.60500 -6.57870 -4.20010 0.10094 0.76917 1.13810 1.16654 1.27872 2.65350 3.03320 3.11450 3.15417 3.22689 3.54311 3.60675 3.78243 4.08073 4.12729 4.40101 4.54164 4.80915 4.82722 4.87296 4.92413 5.00258 5.03162 5.13374 5.24282 5.29122 5.32037 5.36430 5.43490 5.44592 5.51116 5.62873 5.86326 5.88685 5.93888 6.16379 6.26604 6.33054 6.38919 6.41504 6.43701 6.68427 6.88387 6.91320 7.25792 7.79617 8.56311 8.90768 9.67699 10.59422 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.011791 B = 0.003068 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.051807 B = 9124.652870 C =10623.384525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.951 5.951 3 C 0.134 3.866 4 C -0.105 4.105 5 C -0.107 4.107 6 C -0.117 4.117 7 C -0.109 4.109 8 C -0.116 4.116 9 S 2.689 3.311 10 O -0.951 6.951 11 O -0.940 6.940 12 C -0.690 4.690 13 C -0.017 4.017 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.102 4.102 17 C 0.427 3.573 18 O -0.547 6.547 19 O -0.203 6.203 20 C -0.374 4.374 21 H 0.099 0.901 22 C 0.043 3.957 23 N -0.857 5.857 24 Si 0.947 3.053 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.268 1.268 28 C 0.031 3.969 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.151 0.849 40 H 0.273 0.727 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.335 7.299 15.103 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.782 5.782 3 C 0.041 3.959 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.128 4.128 8 C -0.138 4.138 9 S 2.782 3.218 10 O -0.942 6.942 11 O -0.931 6.931 12 C -0.778 4.778 13 C -0.036 4.036 14 C -0.167 4.167 15 C -0.036 4.036 16 C -0.105 4.105 17 C 0.275 3.725 18 O -0.446 6.446 19 O -0.109 6.109 20 C -0.450 4.450 21 H 0.117 0.883 22 C -0.163 4.163 23 N -0.493 5.493 24 Si 0.771 3.229 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.193 1.193 28 C 0.011 3.989 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.169 0.831 40 H 0.083 0.917 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.891 6.870 15.712 20.867 hybrid contribution 0.560 0.141 -1.464 1.574 sum -11.331 7.011 14.247 19.507 Atomic orbital electron populations 1.21653 0.76947 1.03711 1.02974 1.55274 1.15292 1.19321 1.88292 1.17320 0.96661 0.86836 0.95083 1.21329 0.97117 0.97091 0.97071 1.21035 0.99039 0.93506 0.99014 1.21244 0.98269 0.99727 0.94342 1.21067 0.96493 0.96642 0.98592 1.21261 1.00844 0.94535 0.97121 1.02234 0.73304 0.72045 0.74190 1.93577 1.69005 1.59613 1.71959 1.93619 1.35803 1.83391 1.80244 1.30665 1.05101 1.16081 1.25906 1.20982 0.95606 0.91675 0.95359 1.21261 0.99330 1.02093 0.94029 1.22021 0.90582 0.90294 1.00742 1.19546 0.95759 1.01254 0.93905 1.20581 0.86243 0.82548 0.83119 1.90659 1.41471 1.38852 1.73591 1.83864 1.44105 1.62560 1.20418 1.21316 0.99351 1.31216 0.93130 0.88311 1.25409 0.99075 0.95966 0.95817 1.69956 1.33769 1.31945 1.13670 0.85675 0.79853 0.79262 0.78065 1.19259 1.20218 1.19283 1.20948 0.93840 0.92450 0.91643 0.91484 0.90331 0.90566 0.85402 0.85400 0.85700 0.85467 0.85444 0.84348 0.84477 0.83116 0.91702 0.83246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 10.22 59.85 0.61 1.33 16 2 N -0.95 -10.72 3.24 -65.40 -0.21 -10.93 16 3 C 0.13 1.61 5.25 -83.79 -0.44 1.17 16 4 C -0.11 -1.26 8.62 -39.38 -0.34 -1.60 16 5 C -0.11 -1.12 10.04 -39.62 -0.40 -1.52 16 6 C -0.12 -1.15 10.04 -39.55 -0.40 -1.55 16 7 C -0.11 -1.12 10.04 -39.61 -0.40 -1.52 16 8 C -0.12 -1.29 9.38 -39.38 -0.37 -1.66 16 9 S 2.69 37.35 5.56 -107.50 -0.60 36.76 16 10 O -0.95 -13.90 16.54 -57.17 -0.95 -14.84 16 11 O -0.94 -15.60 14.92 -57.17 -0.85 -16.45 16 12 C -0.69 -10.36 5.97 -39.64 -0.24 -10.60 16 13 C -0.02 -0.22 9.52 -39.48 -0.38 -0.59 16 14 C -0.15 -1.99 10.03 -39.64 -0.40 -2.39 16 15 C -0.02 -0.31 9.62 -39.16 -0.38 -0.68 16 16 C -0.10 -2.08 5.87 -104.98 -0.62 -2.70 16 17 C 0.43 10.88 7.84 34.58 0.27 11.15 16 18 O -0.55 -15.12 15.59 -19.28 -0.30 -15.42 16 19 O -0.20 -5.70 8.99 -21.63 -0.19 -5.89 16 20 C -0.37 -10.86 9.65 30.95 0.30 -10.56 16 21 H 0.10 2.88 6.86 -52.49 -0.36 2.52 16 22 C 0.04 1.16 5.50 -17.52 -0.10 1.06 16 23 N -0.86 -24.10 13.67 55.49 0.76 -23.34 16 24 Si 0.95 20.70 29.55 -169.99 -5.02 15.68 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 28 C 0.03 0.56 9.07 -39.16 -0.35 0.21 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.49 7.57 -51.93 -0.39 0.10 16 31 H 0.08 0.51 7.93 -51.93 -0.41 0.09 16 32 H 0.13 1.47 7.55 -52.48 -0.40 1.08 16 33 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 1.24 8.00 -52.48 -0.42 0.82 16 37 H 0.14 1.38 7.60 -52.49 -0.40 0.98 16 38 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.15 2.67 7.61 -52.48 -0.40 2.27 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.15 2.85 7.21 -52.49 -0.38 2.47 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -35.80 375.04 -9.74 -45.54 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.41 Total: 3.69 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -3.61 Total: -20.43 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.55 Total: -34.27 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -2.29 Total: -52.61 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 37.35 SS G_CDS: -0.60 Total: 36.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.80 -9.74 -45.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003564790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.455 kcal (2) G-P(sol) polarization free energy of solvation -35.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds