Wall clock time and date at job start Tue Mar 31 2020 04:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39672 * 120.00045 * 2 1 4 4 C 1.38914 * 120.07002 * 119.60749 * 3 2 1 5 5 C 1.38105 * 119.91987 * 179.77166 * 4 3 2 6 6 C 1.38277 * 120.07889 * 0.50868 * 5 4 3 7 7 C 1.38292 * 120.14903 * 359.74809 * 6 5 4 8 8 C 1.38098 * 120.07286 * 359.97438 * 7 6 5 9 9 S 1.65603 * 119.99903 * 180.02562 * 2 1 3 10 10 O 1.42094 * 106.40318 * 330.86955 * 9 2 1 11 11 O 1.42095 * 106.40047 * 197.94450 * 9 2 1 12 12 C 1.76200 * 107.21478 * 84.40657 * 9 2 1 13 13 C 1.38403 * 119.92695 * 269.72098 * 12 9 2 14 14 C 1.38355 * 120.31377 * 180.27900 * 13 12 9 15 15 C 1.37956 * 120.15187 * 0.02562 * 14 13 12 16 16 C 1.39646 * 119.84534 * 0.02562 * 15 14 13 17 17 C 1.47658 * 120.15174 * 180.02562 * 16 15 14 18 18 O 1.21514 * 120.00094 * 179.97438 * 17 16 15 19 19 O 1.34734 * 120.00160 * 359.97438 * 17 16 15 20 20 C 1.34850 * 116.99780 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00704 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99615 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99993 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99694 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47248 * 60.00752 * 24 22 20 26 26 H 1.48501 * 109.46725 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47008 * 300.00243 * 24 22 20 28 28 C 1.37917 * 119.92215 * 90.00169 * 12 9 2 29 29 H 1.09002 * 109.47031 * 269.99442 * 1 2 3 30 30 H 1.08995 * 109.46997 * 29.99153 * 1 2 3 31 31 H 1.08997 * 109.47403 * 150.00151 * 1 2 3 32 32 H 1.08003 * 120.03726 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.96084 * 180.25518 * 5 4 3 34 34 H 1.08001 * 119.93115 * 179.72068 * 6 5 4 35 35 H 1.07997 * 119.96223 * 179.97438 * 7 6 5 36 36 H 1.08006 * 120.03849 * 179.97438 * 8 7 6 37 37 H 1.07997 * 119.83747 * 0.25794 * 13 12 9 38 38 H 1.07997 * 119.92498 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.07448 * 180.02562 * 15 14 13 40 40 H 0.97003 * 119.99828 * 179.97438 * 23 22 20 41 41 H 1.07995 * 120.07828 * 359.69787 * 28 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 3.0258 1.5154 1.0452 5 6 3.7184 2.7102 1.0397 6 6 3.5462 3.6063 0.0007 7 6 2.6844 3.3073 -1.0387 8 6 1.9931 2.1119 -1.0424 9 16 2.2930 -1.4342 -0.0006 10 8 1.4625 -2.3773 0.6625 11 8 3.6167 -1.1334 0.4195 12 6 2.4117 -1.9671 -1.6759 13 6 1.4273 -2.7776 -2.2141 14 6 1.5154 -3.2054 -3.5269 15 6 2.5870 -2.8265 -4.3087 16 6 3.5845 -2.0098 -3.7720 17 6 4.7341 -1.5998 -4.6030 18 8 5.6003 -0.8886 -4.1333 19 8 4.8228 -2.0141 -5.8819 20 6 5.8980 -1.6042 -6.5851 21 1 6.6396 -0.9727 -6.1187 22 6 6.0521 -1.9949 -7.9082 23 7 5.1499 -2.7637 -8.4756 24 14 7.5411 -1.4264 -8.8825 25 1 8.7796 -1.9082 -8.2198 26 1 7.4704 -1.9762 -10.2602 27 1 7.5566 0.0573 -8.9423 28 6 3.4883 -1.5803 -2.4463 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3634 -0.8900 -0.5138 32 1 3.1576 0.8178 1.8591 33 1 4.3922 2.9468 1.8500 34 1 4.0856 4.5420 0.0011 35 1 2.5519 4.0095 -1.8484 36 1 1.3199 1.8791 -1.8542 37 1 0.5866 -3.0777 -1.6062 38 1 0.7434 -3.8373 -3.9405 39 1 2.6543 -3.1609 -5.3335 40 1 5.2574 -3.0363 -9.4003 41 1 4.2556 -0.9476 -2.0253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003564790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:08 Heat of formation + Delta-G solvation = -106.764372 kcal Electronic energy + Delta-G solvation = -29548.564703 eV Core-core repulsion = 25292.511490 eV Total energy + Delta-G solvation = -4256.053213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.086 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41928 -40.47424 -39.87352 -38.55746 -37.34676 -37.16821 -36.86693 -34.43353 -32.78739 -32.37115 -31.88994 -30.86571 -27.85500 -27.18454 -25.33493 -24.43727 -23.70188 -23.10893 -22.25502 -20.50452 -19.98032 -19.63180 -18.89209 -18.03284 -17.98709 -17.27928 -17.15537 -16.72166 -16.71592 -16.54767 -16.22563 -16.07888 -15.68434 -15.13513 -15.02619 -14.64046 -14.54125 -14.36109 -14.27008 -13.98648 -13.72405 -13.56234 -13.49412 -13.38386 -13.24072 -13.21640 -12.95815 -12.84939 -12.48009 -12.33227 -12.27908 -12.19476 -12.12669 -11.93155 -11.27604 -10.80282 -10.78331 -10.66539 -10.28233 -9.89004 -9.44775 -8.63908 -6.41011 -1.00126 -0.55298 -0.22436 0.34311 0.44806 1.30389 1.31437 1.47146 1.53815 1.74872 2.02046 2.35852 2.51264 2.55340 2.78034 2.94033 3.09757 3.63759 3.73427 3.79911 3.91238 4.01589 4.04428 4.06872 4.19810 4.27941 4.51843 4.53953 4.57039 4.60356 4.62780 4.67238 4.82401 4.85328 4.94401 5.04630 5.08827 5.12290 5.15041 5.37472 5.49255 5.57919 5.58560 5.60457 5.72161 6.09844 6.48364 6.80278 7.59288 8.55906 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.011791 B = 0.003068 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.051807 B = 9124.652870 C =10623.384525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.944 5.944 3 C 0.118 3.882 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.120 4.120 7 C -0.118 4.118 8 C -0.127 4.127 9 S 2.705 3.295 10 O -0.954 6.954 11 O -0.973 6.973 12 C -0.689 4.689 13 C 0.006 3.994 14 C -0.129 4.129 15 C -0.021 4.021 16 C -0.138 4.138 17 C 0.427 3.573 18 O -0.580 6.580 19 O -0.225 6.225 20 C -0.424 4.424 21 H 0.082 0.918 22 C 0.003 3.997 23 N -0.892 5.892 24 Si 1.018 2.982 25 H -0.263 1.263 26 H -0.255 1.255 27 H -0.260 1.260 28 C 0.023 3.977 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.185 0.815 38 H 0.186 0.814 39 H 0.140 0.860 40 H 0.283 0.717 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.545 7.272 15.437 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.776 5.776 3 C 0.025 3.975 4 C -0.149 4.149 5 C -0.134 4.134 6 C -0.139 4.139 7 C -0.137 4.137 8 C -0.149 4.149 9 S 2.798 3.202 10 O -0.944 6.944 11 O -0.964 6.964 12 C -0.775 4.775 13 C -0.013 4.013 14 C -0.147 4.147 15 C -0.040 4.040 16 C -0.140 4.140 17 C 0.277 3.723 18 O -0.480 6.480 19 O -0.132 6.132 20 C -0.499 4.499 21 H 0.100 0.900 22 C -0.199 4.199 23 N -0.528 5.528 24 Si 0.836 3.164 25 H -0.187 1.187 26 H -0.179 1.179 27 H -0.185 1.185 28 C 0.004 3.996 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.142 0.858 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.202 0.798 38 H 0.203 0.797 39 H 0.158 0.842 40 H 0.093 0.907 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.134 6.816 16.049 22.445 hybrid contribution 1.066 0.182 -1.349 1.729 sum -13.068 6.998 14.700 20.877 Atomic orbital electron populations 1.22041 0.74686 1.05523 1.04418 1.55039 1.16575 1.18037 1.87933 1.17489 0.97302 0.87158 0.95579 1.21523 0.97937 0.97924 0.97501 1.21358 0.99014 0.93122 0.99894 1.21600 0.97979 1.00520 0.93792 1.21420 0.96219 0.96796 0.99264 1.21482 1.01356 0.94818 0.97204 1.01714 0.72655 0.72366 0.73481 1.93566 1.68809 1.60349 1.71654 1.93577 1.38120 1.84020 1.80641 1.30943 1.04348 1.16016 1.26215 1.21625 0.95475 0.88770 0.95444 1.21723 0.98397 1.01013 0.93552 1.22031 0.91150 0.89959 1.00856 1.19348 0.95617 1.04723 0.94290 1.21630 0.87073 0.80943 0.82659 1.90603 1.43202 1.40147 1.74033 1.83884 1.44243 1.63546 1.21571 1.21489 1.00343 1.33542 0.94550 0.90005 1.26559 1.02210 0.95268 0.95864 1.70020 1.35588 1.32641 1.14523 0.84683 0.75502 0.79147 0.77029 1.18739 1.17864 1.18479 1.20764 0.94836 0.92886 0.91144 0.90340 0.88606 0.88747 0.85783 0.83450 0.83244 0.83594 0.84333 0.79756 0.79677 0.84244 0.90749 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.22 127.77 1.31 2.28 16 2 N -0.94 -19.84 3.24 -360.81 -1.17 -21.01 16 3 C 0.12 2.77 5.25 38.22 0.20 2.98 16 4 C -0.13 -3.07 8.62 22.40 0.19 -2.87 16 5 C -0.12 -2.35 10.04 22.25 0.22 -2.13 16 6 C -0.12 -2.24 10.04 22.29 0.22 -2.01 16 7 C -0.12 -2.31 10.04 22.25 0.22 -2.09 16 8 C -0.13 -2.73 9.38 22.40 0.21 -2.52 16 9 S 2.71 71.76 5.56 -56.49 -0.31 71.45 16 10 O -0.95 -25.30 16.54 -128.00 -2.12 -27.42 16 11 O -0.97 -32.82 14.92 -128.00 -1.91 -34.73 16 12 C -0.69 -19.67 5.97 22.23 0.13 -19.53 16 13 C 0.01 0.13 9.52 22.34 0.21 0.34 16 14 C -0.13 -2.98 10.03 22.23 0.22 -2.76 16 15 C -0.02 -0.73 9.62 22.54 0.22 -0.51 16 16 C -0.14 -5.82 5.87 -20.10 -0.12 -5.93 16 17 C 0.43 23.23 7.84 70.31 0.55 23.78 16 18 O -0.58 -34.37 15.59 19.79 0.31 -34.06 16 19 O -0.22 -13.44 8.99 11.37 0.10 -13.34 16 20 C -0.42 -25.96 9.65 67.96 0.66 -25.30 16 21 H 0.08 5.12 6.86 -2.91 -0.02 5.10 16 22 C 0.00 0.16 5.50 84.89 0.47 0.62 16 23 N -0.89 -51.19 13.67 21.64 0.30 -50.89 16 24 Si 1.02 42.82 29.55 68.60 2.03 44.85 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 27 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 28 C 0.02 0.88 9.07 22.54 0.20 1.08 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.92 7.57 -2.39 -0.02 0.90 16 31 H 0.09 0.86 7.93 -2.39 -0.02 0.84 16 32 H 0.12 2.94 7.55 -2.91 -0.02 2.92 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 36 H 0.14 2.52 8.00 -2.91 -0.02 2.50 16 37 H 0.19 2.49 7.60 -2.91 -0.02 2.47 16 38 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.14 5.05 7.61 -2.91 -0.02 5.03 16 40 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 41 H 0.13 5.28 7.21 -2.91 -0.02 5.26 16 Total: -1.00 -83.45 375.04 3.42 -80.03 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.07 Total: 19.70 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 5.12 Total: -34.58 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -0.87 Total: -71.90 kcal Atomic # 8 Polarization: -105.93 SS G_CDS: -3.62 Total: -109.54 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 71.76 SS G_CDS: -0.31 Total: 71.45 kcal Total: -83.45 3.42 -80.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003564790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.734 kcal (2) G-P(sol) polarization free energy of solvation -83.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds