Wall clock time and date at job start Tue Mar 31 2020 05:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35956 * 116.99496 * 2 1 4 4 C 1.38000 * 119.99573 * 359.97438 * 3 2 1 5 5 C 1.40167 * 119.82386 * 179.97438 * 4 3 2 6 6 C 1.46541 * 120.09476 * 180.02562 * 5 4 3 7 7 C 1.36592 * 120.00014 * 151.23117 * 6 5 4 8 8 C 1.43205 * 119.99856 * 352.77589 * 7 6 5 9 9 N 6.64348 * 111.37550 * 17.70954 * 2 1 3 10 10 C 1.47405 * 119.99816 * 172.77419 * 7 6 5 11 11 N 1.31275 * 125.14469 * 0.03045 * 10 7 6 12 12 C 1.35480 * 109.64091 * 179.97438 * 11 10 7 13 13 C 1.39899 * 133.35741 * 180.02562 * 12 11 10 14 14 C 1.36596 * 119.88621 * 179.68765 * 13 12 11 15 15 C 1.38774 * 120.67759 * 0.25919 * 14 13 12 16 16 C 1.37922 * 120.46690 * 359.97438 * 15 14 13 17 17 C 1.38778 * 119.71827 * 0.02562 * 16 15 14 18 18 N 1.37047 * 125.13836 * 180.59425 * 10 7 6 19 19 H 0.97004 * 126.40978 * 359.39222 * 18 10 7 20 20 C 1.40234 * 119.81232 * 0.27889 * 5 4 3 21 21 C 1.37576 * 119.97684 * 359.44240 * 20 5 4 22 22 C 1.39117 * 120.17857 * 0.56020 * 21 20 5 23 23 O 1.35586 * 119.89986 * 179.69673 * 22 21 20 24 24 C 1.34748 * 117.00250 * 6.08538 * 23 22 21 25 25 H 1.07997 * 119.99948 * 354.90782 * 24 23 22 26 26 C 1.38703 * 119.99580 * 174.90547 * 24 23 22 27 27 N 1.31511 * 120.00422 * 0.02562 * 26 24 23 28 28 Si 1.86801 * 119.99519 * 179.97438 * 26 24 23 29 29 H 1.48502 * 109.47137 * 90.00403 * 28 26 24 30 30 H 1.48496 * 109.47135 * 210.00492 * 28 26 24 31 31 H 1.48497 * 109.47359 * 330.00364 * 28 26 24 32 32 H 1.08998 * 109.47217 * 299.99377 * 1 2 3 33 33 H 1.08992 * 109.47469 * 59.99981 * 1 2 3 34 34 H 1.09006 * 109.46854 * 180.02562 * 1 2 3 35 35 H 1.08000 * 120.08968 * 359.96103 * 4 3 2 36 36 H 1.07996 * 119.99563 * 331.22767 * 6 5 4 37 37 H 1.07993 * 120.06096 * 359.96344 * 13 12 11 38 38 H 1.08003 * 119.66402 * 180.27144 * 14 13 12 39 39 H 1.08004 * 119.76907 * 180.02562 * 15 14 13 40 40 H 1.08004 * 120.14409 * 180.02562 * 16 15 14 41 41 H 1.07995 * 120.01173 * 179.70463 * 20 5 4 42 42 H 1.08000 * 119.90935 * 180.26085 * 21 20 5 43 43 H 0.96998 * 120.00246 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2943 2.3687 -0.0005 5 6 1.9343 3.6157 0.0000 6 6 1.1418 4.8483 0.0000 7 6 1.6444 5.9834 0.5698 8 6 2.8744 5.9331 1.3015 9 7 3.8504 5.8933 1.8819 10 6 0.9207 7.2602 0.4315 11 7 -0.2109 7.4213 -0.2141 12 6 -0.5955 8.7183 -0.1422 13 6 -1.6963 9.4228 -0.6413 14 6 -1.8176 10.7606 -0.3933 15 6 -0.8555 11.4337 0.3463 16 6 0.2408 10.7611 0.8443 17 6 0.3820 9.4018 0.6032 18 7 1.3332 8.4606 0.9482 19 1 2.1363 8.6178 1.4690 20 6 3.3351 3.6804 -0.0048 21 6 4.0768 2.5218 0.0015 22 6 3.4410 1.2844 0.0010 23 8 4.1775 0.1460 0.0010 24 6 5.5121 0.2809 0.1289 25 1 5.9566 1.2650 0.1426 26 6 6.3150 -0.8444 0.2429 27 7 5.7738 -2.0429 0.2258 28 14 8.1652 -0.6575 0.4195 29 1 8.5183 -0.5648 1.8589 30 1 8.8413 -1.8353 -0.1812 31 1 8.6070 0.5763 -0.2790 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 0.2157 2.3137 -0.0016 36 1 0.1604 4.8592 -0.4505 37 1 -2.4512 8.9090 -1.2178 38 1 -2.6712 11.3000 -0.7766 39 1 -0.9663 12.4915 0.5339 40 1 0.9863 11.2901 1.4196 41 1 3.8315 4.6395 -0.0092 42 1 5.1556 2.5729 0.0020 43 1 6.3353 -2.8298 0.3059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003902153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:41 Heat of formation + Delta-G solvation = 89.931826 kcal Electronic energy + Delta-G solvation = -29495.356519 eV Core-core repulsion = 25280.514587 eV Total energy + Delta-G solvation = -4214.841932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.16801 -39.89143 -38.02352 -37.82534 -37.16759 -35.89635 -33.73384 -33.17138 -32.56618 -30.23392 -29.97237 -29.69659 -28.31441 -26.70475 -25.76598 -24.17583 -22.76341 -22.54641 -21.81940 -21.30563 -20.73148 -18.61656 -18.35991 -17.88189 -17.20003 -16.57230 -16.49019 -15.54870 -15.48466 -15.30433 -15.06013 -14.83650 -14.50003 -14.39931 -14.18636 -14.10380 -13.88868 -13.72637 -13.53994 -13.30061 -12.77716 -12.55151 -12.32785 -12.20482 -12.11415 -11.91234 -11.77910 -11.72331 -11.54265 -11.20350 -11.10840 -10.96101 -10.79953 -10.75200 -10.59239 -10.14016 -9.75955 -9.67308 -9.09031 -8.52587 -8.27710 -7.98519 -7.02944 -6.77683 -4.24652 0.27897 1.03547 1.34051 2.01647 2.24500 2.60415 2.65054 2.75476 2.98554 3.00002 3.04582 3.56025 3.68745 3.72575 3.75648 3.84537 4.27322 4.34035 4.43820 4.74296 4.77804 4.84229 4.87516 5.06081 5.14256 5.23876 5.31678 5.34866 5.43557 5.48692 5.50079 5.53302 5.74493 5.79065 5.83427 5.96011 6.08868 6.17028 6.23355 6.30682 6.32308 6.36638 6.65477 6.66832 6.80761 6.94139 7.07238 7.10291 7.33148 7.58388 7.63471 7.71763 7.96992 8.64796 9.31381 10.36888 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.002039 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.191960 B =13728.083069 C =15237.874179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.303 6.303 3 C 0.054 3.946 4 C -0.126 4.126 5 C -0.193 4.193 6 C 0.107 3.893 7 C -0.104 4.104 8 C 0.262 3.738 9 N -0.425 5.425 10 C 0.367 3.633 11 N -0.492 5.492 12 C 0.059 3.941 13 C -0.067 4.067 14 C -0.129 4.129 15 C -0.108 4.108 16 C -0.110 4.110 17 C 0.045 3.955 18 N -0.602 5.602 19 H 0.422 0.578 20 C -0.049 4.049 21 C -0.224 4.224 22 C 0.153 3.847 23 O -0.136 6.136 24 C -0.385 4.385 25 H 0.101 0.899 26 C 0.042 3.958 27 N -0.835 5.835 28 Si 0.947 3.053 29 H -0.269 1.269 30 H -0.273 1.273 31 H -0.263 1.263 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.152 0.848 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.138 0.862 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.685 18.680 -0.765 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.217 6.217 3 C 0.009 3.991 4 C -0.145 4.145 5 C -0.195 4.195 6 C 0.081 3.919 7 C -0.111 4.111 8 C -0.052 4.052 9 N -0.102 5.102 10 C 0.104 3.896 11 N -0.213 5.213 12 C -0.061 4.061 13 C -0.087 4.087 14 C -0.149 4.149 15 C -0.128 4.128 16 C -0.131 4.131 17 C -0.064 4.064 18 N -0.212 5.212 19 H 0.261 0.739 20 C -0.069 4.069 21 C -0.244 4.244 22 C 0.094 3.906 23 O -0.035 6.035 24 C -0.460 4.460 25 H 0.118 0.882 26 C -0.166 4.166 27 N -0.465 5.465 28 Si 0.770 3.230 29 H -0.194 1.194 30 H -0.198 1.198 31 H -0.187 1.187 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.147 0.853 36 H 0.170 0.830 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.155 0.845 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.550 17.300 -0.326 20.804 hybrid contribution 1.224 1.002 0.577 1.683 sum -10.326 18.302 0.251 21.015 Atomic orbital electron populations 1.22942 0.79967 1.03226 1.00534 1.86243 1.19751 1.26015 1.89651 1.17989 0.89240 0.84736 1.07174 1.20805 0.98723 0.90440 1.04565 1.18067 0.92604 0.91406 1.17399 1.22614 0.96743 0.88533 0.83991 1.14978 0.93097 0.90841 1.12215 1.25240 0.92512 0.94202 0.93228 1.81323 1.10972 1.06656 1.11246 1.20915 0.91021 0.84795 0.92874 1.70649 1.10851 1.16742 1.23016 1.19057 0.96417 0.89775 1.00811 1.20050 0.95719 0.93484 0.99441 1.20628 0.99807 0.93990 1.00467 1.20857 0.93805 0.99683 0.98470 1.19966 0.99851 0.90103 1.03205 1.18905 0.92276 0.92194 1.03060 1.43169 1.22551 1.07582 1.47938 0.73887 1.21162 0.92418 0.97714 0.95567 1.20773 1.00779 0.90574 1.12243 1.18929 0.88325 0.87427 0.95886 1.83957 1.20006 1.26278 1.73238 1.21645 0.78318 0.95341 1.50737 0.88191 1.25484 1.01264 0.94058 0.95794 1.70036 1.37088 0.97951 1.41455 0.85605 0.79256 0.78851 0.79255 1.19406 1.19828 1.18736 0.93333 0.93233 0.88914 0.85292 0.83030 0.85252 0.85461 0.85451 0.86116 0.86753 0.84467 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.30 -6.08 10.28 -34.22 -0.35 -6.43 16 3 C 0.05 1.09 6.70 -39.13 -0.26 0.83 16 4 C -0.13 -2.06 8.78 -38.94 -0.34 -2.40 16 5 C -0.19 -3.10 5.59 -105.08 -0.59 -3.69 16 6 C 0.11 1.39 9.49 -36.83 -0.35 1.04 16 7 C -0.10 -1.38 5.81 -104.83 -0.61 -1.99 16 8 C 0.26 3.88 11.23 -22.46 -0.25 3.62 16 9 N -0.43 -7.07 17.87 41.85 0.75 -6.32 16 10 C 0.37 4.75 7.72 -154.45 -1.19 3.56 16 11 N -0.49 -6.72 10.79 -8.77 -0.09 -6.82 16 12 C 0.06 0.74 7.22 -84.72 -0.61 0.13 16 13 C -0.07 -0.68 10.05 -39.55 -0.40 -1.07 16 14 C -0.13 -1.02 9.96 -39.98 -0.40 -1.42 16 15 C -0.11 -0.84 10.03 -39.50 -0.40 -1.23 16 16 C -0.11 -1.00 10.07 -39.50 -0.40 -1.39 16 17 C 0.05 0.52 7.30 -83.89 -0.61 -0.09 16 18 N -0.60 -6.84 6.13 -8.48 -0.05 -6.90 16 19 H 0.42 3.98 8.70 -40.82 -0.36 3.63 16 20 C -0.05 -0.89 8.28 -39.07 -0.32 -1.22 16 21 C -0.22 -4.68 9.14 -39.50 -0.36 -5.04 16 22 C 0.15 3.55 6.67 -38.72 -0.26 3.29 16 23 O -0.14 -3.71 9.52 -13.83 -0.13 -3.84 16 24 C -0.39 -10.16 9.48 30.90 0.29 -9.86 16 25 H 0.10 2.42 5.18 -52.49 -0.27 2.15 16 26 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 27 N -0.83 -23.06 13.67 55.48 0.76 -22.30 16 28 Si 0.95 19.32 29.55 -169.99 -5.02 14.30 16 29 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 30 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 31 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 32 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.13 1.66 6.28 -52.49 -0.33 1.33 16 36 H 0.15 1.66 7.75 -52.49 -0.41 1.25 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 39 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 40 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 41 H 0.11 1.95 5.28 -52.49 -0.28 1.68 16 42 H 0.14 2.87 5.62 -52.49 -0.29 2.57 16 43 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -31.60 380.76 -8.55 -40.15 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.98 Total: 6.99 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -6.16 Total: -14.56 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 1.36 Total: -42.33 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.48 Total: -10.27 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.60 -8.55 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003902153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.079 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds