Wall clock time and date at job start Tue Mar 31 2020 05:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35956 * 116.99496 * 2 1 4 4 C 1.38000 * 119.99573 * 359.97438 * 3 2 1 5 5 C 1.40167 * 119.82386 * 179.97438 * 4 3 2 6 6 C 1.46541 * 120.09476 * 180.02562 * 5 4 3 7 7 C 1.36592 * 120.00014 * 151.23117 * 6 5 4 8 8 C 1.43205 * 119.99856 * 352.77589 * 7 6 5 9 9 N 6.64348 * 111.37550 * 17.70954 * 2 1 3 10 10 C 1.47405 * 119.99816 * 172.77419 * 7 6 5 11 11 N 1.31275 * 125.14469 * 0.03045 * 10 7 6 12 12 C 1.35480 * 109.64091 * 179.97438 * 11 10 7 13 13 C 1.39899 * 133.35741 * 180.02562 * 12 11 10 14 14 C 1.36596 * 119.88621 * 179.68765 * 13 12 11 15 15 C 1.38774 * 120.67759 * 0.25919 * 14 13 12 16 16 C 1.37922 * 120.46690 * 359.97438 * 15 14 13 17 17 C 1.38778 * 119.71827 * 0.02562 * 16 15 14 18 18 N 1.37047 * 125.13836 * 180.59425 * 10 7 6 19 19 H 0.97004 * 126.40978 * 359.39222 * 18 10 7 20 20 C 1.40234 * 119.81232 * 0.27889 * 5 4 3 21 21 C 1.37576 * 119.97684 * 359.44240 * 20 5 4 22 22 C 1.39117 * 120.17857 * 0.56020 * 21 20 5 23 23 O 1.35586 * 119.89986 * 179.69673 * 22 21 20 24 24 C 1.34748 * 117.00250 * 6.08538 * 23 22 21 25 25 H 1.07997 * 119.99948 * 354.90782 * 24 23 22 26 26 C 1.38703 * 119.99580 * 174.90547 * 24 23 22 27 27 N 1.31511 * 120.00422 * 0.02562 * 26 24 23 28 28 Si 1.86801 * 119.99519 * 179.97438 * 26 24 23 29 29 H 1.48502 * 109.47137 * 90.00403 * 28 26 24 30 30 H 1.48496 * 109.47135 * 210.00492 * 28 26 24 31 31 H 1.48497 * 109.47359 * 330.00364 * 28 26 24 32 32 H 1.08998 * 109.47217 * 299.99377 * 1 2 3 33 33 H 1.08992 * 109.47469 * 59.99981 * 1 2 3 34 34 H 1.09006 * 109.46854 * 180.02562 * 1 2 3 35 35 H 1.08000 * 120.08968 * 359.96103 * 4 3 2 36 36 H 1.07996 * 119.99563 * 331.22767 * 6 5 4 37 37 H 1.07993 * 120.06096 * 359.96344 * 13 12 11 38 38 H 1.08003 * 119.66402 * 180.27144 * 14 13 12 39 39 H 1.08004 * 119.76907 * 180.02562 * 15 14 13 40 40 H 1.08004 * 120.14409 * 180.02562 * 16 15 14 41 41 H 1.07995 * 120.01173 * 179.70463 * 20 5 4 42 42 H 1.08000 * 119.90935 * 180.26085 * 21 20 5 43 43 H 0.96998 * 120.00246 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2943 2.3687 -0.0005 5 6 1.9343 3.6157 0.0000 6 6 1.1418 4.8483 0.0000 7 6 1.6444 5.9834 0.5698 8 6 2.8744 5.9331 1.3015 9 7 3.8504 5.8933 1.8819 10 6 0.9207 7.2602 0.4315 11 7 -0.2109 7.4213 -0.2141 12 6 -0.5955 8.7183 -0.1422 13 6 -1.6963 9.4228 -0.6413 14 6 -1.8176 10.7606 -0.3933 15 6 -0.8555 11.4337 0.3463 16 6 0.2408 10.7611 0.8443 17 6 0.3820 9.4018 0.6032 18 7 1.3332 8.4606 0.9482 19 1 2.1363 8.6178 1.4690 20 6 3.3351 3.6804 -0.0048 21 6 4.0768 2.5218 0.0015 22 6 3.4410 1.2844 0.0010 23 8 4.1775 0.1460 0.0010 24 6 5.5121 0.2809 0.1289 25 1 5.9566 1.2650 0.1426 26 6 6.3150 -0.8444 0.2429 27 7 5.7738 -2.0429 0.2258 28 14 8.1652 -0.6575 0.4195 29 1 8.5183 -0.5648 1.8589 30 1 8.8413 -1.8353 -0.1812 31 1 8.6070 0.5763 -0.2790 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 0.2157 2.3137 -0.0016 36 1 0.1604 4.8592 -0.4505 37 1 -2.4512 8.9090 -1.2178 38 1 -2.6712 11.3000 -0.7766 39 1 -0.9663 12.4915 0.5339 40 1 0.9863 11.2901 1.4196 41 1 3.8315 4.6395 -0.0092 42 1 5.1556 2.5729 0.0020 43 1 6.3353 -2.8298 0.3059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003902153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:40 Heat of formation + Delta-G solvation = 71.203813 kcal Electronic energy + Delta-G solvation = -29496.168626 eV Core-core repulsion = 25280.514587 eV Total energy + Delta-G solvation = -4215.654039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.03861 -41.42443 -39.39898 -39.20876 -38.09794 -37.31585 -35.02034 -34.31972 -34.04323 -31.45805 -31.09618 -30.82792 -29.38150 -27.88782 -27.48332 -25.48941 -23.78340 -23.37840 -23.17204 -22.50565 -21.90301 -20.03030 -19.80234 -19.01792 -18.42102 -17.79588 -17.45700 -17.07178 -16.69763 -16.49862 -16.35929 -16.10574 -15.76084 -15.50837 -15.35553 -15.23285 -15.13756 -14.98774 -14.78077 -14.61661 -14.09570 -13.94505 -13.77647 -13.45545 -13.24272 -12.90270 -12.89231 -12.83277 -12.68968 -12.62804 -12.43775 -12.20928 -12.04752 -12.03607 -11.81437 -11.45841 -11.04846 -11.03268 -10.69907 -9.67428 -9.27857 -9.07508 -8.56968 -8.51152 -6.19326 -0.83371 0.12725 0.45256 0.60085 0.84376 1.31408 1.40762 1.44463 1.48627 1.65633 1.78069 2.10393 2.37919 2.52744 2.53894 2.73011 2.96369 3.02575 3.23657 3.31857 3.50514 3.82146 3.92679 4.00131 4.20712 4.23070 4.29024 4.34125 4.45112 4.47601 4.51241 4.54834 4.56303 4.73801 4.76263 4.80596 4.92443 4.93651 5.04232 5.16858 5.24691 5.33498 5.47088 5.52439 5.58490 5.64427 5.78909 5.87862 5.98448 6.24121 6.34456 6.58463 6.76797 6.86695 7.63415 8.64968 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.002039 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.191960 B =13728.083069 C =15237.874179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.342 6.342 3 C 0.044 3.956 4 C -0.110 4.110 5 C -0.154 4.154 6 C 0.108 3.892 7 C -0.066 4.066 8 C 0.270 3.730 9 N -0.449 5.449 10 C 0.343 3.657 11 N -0.496 5.496 12 C 0.022 3.978 13 C -0.079 4.079 14 C -0.122 4.122 15 C -0.096 4.096 16 C -0.122 4.122 17 C 0.035 3.965 18 N -0.596 5.596 19 H 0.429 0.571 20 C -0.068 4.068 21 C -0.223 4.223 22 C 0.113 3.887 23 O -0.201 6.201 24 C -0.417 4.417 25 H 0.103 0.897 26 C -0.016 4.016 27 N -0.905 5.905 28 Si 1.017 2.983 29 H -0.264 1.264 30 H -0.266 1.266 31 H -0.253 1.253 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.178 0.822 36 H 0.188 0.812 37 H 0.140 0.860 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.141 0.859 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.357 24.349 -0.850 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.257 6.257 3 C -0.001 4.001 4 C -0.128 4.128 5 C -0.156 4.156 6 C 0.082 3.918 7 C -0.072 4.072 8 C -0.043 4.043 9 N -0.126 5.126 10 C 0.079 3.921 11 N -0.217 5.217 12 C -0.097 4.097 13 C -0.098 4.098 14 C -0.142 4.142 15 C -0.116 4.116 16 C -0.143 4.143 17 C -0.074 4.074 18 N -0.208 5.208 19 H 0.269 0.731 20 C -0.087 4.087 21 C -0.242 4.242 22 C 0.060 3.940 23 O -0.106 6.106 24 C -0.493 4.493 25 H 0.120 0.880 26 C -0.216 4.216 27 N -0.541 5.541 28 Si 0.836 3.164 29 H -0.189 1.189 30 H -0.191 1.191 31 H -0.177 1.177 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.195 0.805 36 H 0.205 0.795 37 H 0.158 0.842 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.159 0.841 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.274 23.064 -0.409 27.667 hybrid contribution 1.666 0.162 0.629 1.788 sum -13.609 23.226 0.220 26.920 Atomic orbital electron populations 1.23360 0.76618 1.05189 1.02637 1.86214 1.23369 1.26384 1.89701 1.18308 0.88640 0.86281 1.06905 1.21295 1.00846 0.88785 1.01912 1.18465 0.92012 0.92910 1.12168 1.22728 0.97668 0.86593 0.84784 1.15089 0.91279 0.91330 1.09538 1.25519 0.92578 0.93375 0.92864 1.81364 1.11860 1.07563 1.11813 1.20644 0.91678 0.84950 0.94790 1.70537 1.10778 1.17860 1.22548 1.19462 0.97965 0.89656 1.02579 1.20359 0.95390 0.94455 0.99634 1.21065 1.00568 0.93307 0.99294 1.21361 0.92542 1.01239 0.96429 1.20347 1.01008 0.89280 1.03618 1.19258 0.91951 0.93117 1.03113 1.43126 1.22813 1.07231 1.47600 0.73085 1.21291 0.93499 0.97030 0.96856 1.20849 1.00659 0.91109 1.11610 1.19606 0.89991 0.87562 0.96874 1.83956 1.20231 1.27777 1.78612 1.21910 0.78978 0.95743 1.52630 0.87967 1.26613 1.05981 0.93521 0.95437 1.70168 1.38636 0.98739 1.46516 0.84612 0.73317 0.79143 0.79333 1.18866 1.19077 1.17696 0.91209 0.90727 0.87443 0.80483 0.79453 0.84249 0.82348 0.82149 0.84130 0.85671 0.85730 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.34 -14.05 10.28 -79.08 -0.81 -14.86 16 3 C 0.04 1.81 6.70 22.56 0.15 1.96 16 4 C -0.11 -3.28 8.78 22.68 0.20 -3.08 16 5 C -0.15 -4.52 5.59 -20.16 -0.11 -4.63 16 6 C 0.11 2.33 9.49 24.05 0.23 2.56 16 7 C -0.07 -1.52 5.81 -20.00 -0.12 -1.64 16 8 C 0.27 7.38 11.23 88.33 0.99 8.37 16 9 N -0.45 -14.31 17.87 19.01 0.34 -13.97 16 10 C 0.34 7.77 7.72 136.25 1.05 8.82 16 11 N -0.50 -11.87 10.79 -181.67 -1.96 -13.83 16 12 C 0.02 0.49 7.22 39.57 0.29 0.78 16 13 C -0.08 -1.29 10.05 22.29 0.22 -1.07 16 14 C -0.12 -1.35 9.96 22.01 0.22 -1.13 16 15 C -0.10 -1.00 10.03 22.32 0.22 -0.77 16 16 C -0.12 -1.70 10.07 22.32 0.22 -1.48 16 17 C 0.04 0.70 7.30 38.86 0.28 0.98 16 18 N -0.60 -11.86 6.13 -180.74 -1.11 -12.97 16 19 H 0.43 7.01 8.70 -92.71 -0.81 6.20 16 20 C -0.07 -2.41 8.28 22.60 0.19 -2.22 16 21 C -0.22 -9.79 9.14 22.32 0.20 -9.59 16 22 C 0.11 5.59 6.67 22.83 0.15 5.75 16 23 O -0.20 -12.12 9.52 -6.13 -0.06 -12.17 16 24 C -0.42 -24.23 9.48 67.93 0.64 -23.59 16 25 H 0.10 5.49 5.18 -2.91 -0.02 5.47 16 26 C -0.02 -0.89 5.49 84.85 0.47 -0.42 16 27 N -0.90 -55.03 13.67 21.62 0.30 -54.73 16 28 Si 1.02 42.80 29.55 68.60 2.03 44.83 16 29 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 30 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 31 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 32 H 0.07 1.42 7.66 -2.39 -0.02 1.40 16 33 H 0.07 1.47 7.65 -2.39 -0.02 1.45 16 34 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.18 3.59 6.28 -2.91 -0.02 3.57 16 36 H 0.19 2.98 7.75 -2.91 -0.02 2.96 16 37 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 38 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 39 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 40 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.13 4.15 5.28 -2.91 -0.02 4.13 16 42 H 0.13 5.67 5.62 -2.91 -0.02 5.66 16 43 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -79.21 380.76 5.65 -73.56 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.31 Total: 23.04 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 6.62 Total: -18.89 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -2.43 Total: -95.50 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.87 Total: -27.04 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -79.21 5.65 -73.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003902153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.762 kcal (2) G-P(sol) polarization free energy of solvation -79.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds