Wall clock time and date at job start Tue Mar 31 2020 05:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35777 * 116.99886 * 2 1 4 4 C 1.38897 * 119.90010 * 0.02562 * 3 2 1 5 5 C 1.37689 * 120.20605 * 179.69335 * 4 3 2 6 6 C 1.40196 * 119.99415 * 0.58734 * 5 4 3 7 7 C 1.46615 * 120.09854 * 179.69371 * 6 5 4 8 8 C 1.36510 * 120.00004 * 330.91347 * 7 6 5 9 9 C 1.43203 * 120.00314 * 352.79402 * 8 7 6 10 10 N 6.05679 * 87.48966 * 341.89840 * 2 1 3 11 11 C 1.47439 * 119.99831 * 172.79598 * 8 7 6 12 12 N 1.31258 * 125.13996 * 0.02562 * 11 8 7 13 13 C 1.35493 * 109.63495 * 179.97438 * 12 11 8 14 14 C 1.39896 * 133.35897 * 179.97438 * 13 12 11 15 15 C 1.36604 * 119.89071 * 179.72546 * 14 13 12 16 16 C 1.38760 * 120.67303 * 0.25990 * 15 14 13 17 17 C 1.37928 * 120.46826 * 0.02562 * 16 15 14 18 18 C 1.38773 * 119.71648 * 0.02562 * 17 16 15 19 19 N 1.37042 * 125.13432 * 180.60974 * 11 8 7 20 20 H 0.96996 * 126.40645 * 359.39243 * 19 11 8 21 21 C 1.40064 * 119.79971 * 359.41933 * 6 5 4 22 22 C 1.38237 * 119.79322 * 0.27626 * 21 6 5 23 23 O 1.35808 * 120.00002 * 180.02562 * 22 21 6 24 24 C 1.34814 * 116.99789 * 6.06906 * 23 22 21 25 25 H 1.08006 * 119.99774 * 354.90479 * 24 23 22 26 26 C 1.38639 * 119.99777 * 174.90355 * 24 23 22 27 27 N 1.31571 * 119.99623 * 180.02562 * 26 24 23 28 28 Si 1.86797 * 119.99997 * 0.02562 * 26 24 23 29 29 H 1.48500 * 109.47233 * 89.99955 * 28 26 24 30 30 H 1.48508 * 109.46793 * 209.99821 * 28 26 24 31 31 H 1.48498 * 109.47309 * 329.99678 * 28 26 24 32 32 H 1.08998 * 109.46725 * 299.99810 * 1 2 3 33 33 H 1.09002 * 109.47115 * 59.99451 * 1 2 3 34 34 H 1.08995 * 109.47037 * 180.02562 * 1 2 3 35 35 H 1.08003 * 119.89349 * 359.97438 * 4 3 2 36 36 H 1.07993 * 120.00554 * 180.28107 * 5 4 3 37 37 H 1.08000 * 119.99792 * 150.91844 * 7 6 5 38 38 H 1.07997 * 120.05233 * 0.02562 * 14 13 12 39 39 H 1.07994 * 119.66002 * 180.27788 * 15 14 13 40 40 H 1.08006 * 119.76886 * 180.02562 * 16 15 14 41 41 H 1.07992 * 120.14111 * 180.02562 * 17 16 15 42 42 H 1.07999 * 120.10366 * 180.29548 * 21 6 5 43 43 H 0.97001 * 119.99980 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.2868 2.3733 0.0005 5 6 1.9053 3.6035 0.0069 6 6 3.3050 3.6843 0.0004 7 6 3.9659 4.9930 0.0004 8 6 3.3487 6.0694 -0.5688 9 6 2.1302 5.8922 -1.2999 10 7 1.1637 5.7515 -1.8801 11 6 3.9367 7.4144 -0.4309 12 7 5.0457 7.6915 0.2142 13 6 5.2942 9.0215 0.1420 14 6 6.3160 9.8363 0.6412 15 6 6.2980 11.1795 0.3936 16 6 5.2713 11.7493 -0.3459 17 6 4.2501 10.9669 -0.8433 18 6 4.2501 9.6004 -0.6014 19 7 3.4019 8.5657 -0.9472 20 1 2.5864 8.6389 -1.4673 21 6 4.0699 2.5110 -0.0002 22 6 3.4401 1.2804 -0.0002 23 8 4.1777 0.1401 -0.0003 24 6 5.5131 0.2750 0.1266 25 1 5.9576 1.2593 0.1396 26 6 6.3157 -0.8497 0.2405 27 7 7.6188 -0.7180 0.3649 28 14 5.5468 -2.5520 0.2173 29 1 5.4803 -3.0461 -1.1815 30 1 6.3732 -3.4794 1.0312 31 1 4.1759 -2.4837 0.7839 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 0.2085 2.3129 0.0005 36 1 1.3124 4.5061 0.0119 37 1 4.9411 5.1054 0.4507 38 1 7.1202 9.4032 1.2174 39 1 7.0911 11.8043 0.7770 40 1 5.2719 12.8130 -0.5333 41 1 3.4539 11.4159 -1.4184 42 1 5.1484 2.5675 -0.0004 43 1 8.1805 -1.5049 0.4442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004149646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:45 Heat of formation + Delta-G solvation = 94.061136 kcal Electronic energy + Delta-G solvation = -29629.493540 eV Core-core repulsion = 25414.830668 eV Total energy + Delta-G solvation = -4214.662871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.23292 -40.03975 -38.19970 -37.86421 -37.24785 -36.06683 -33.87116 -33.23794 -32.44561 -30.37262 -30.10445 -29.71091 -28.48593 -26.91821 -25.41075 -24.42294 -22.81553 -22.59365 -21.76800 -21.37425 -20.79737 -18.66957 -18.11921 -18.04399 -17.40789 -16.74252 -16.28933 -15.98325 -15.56407 -15.48540 -15.12420 -14.57102 -14.51924 -14.48828 -14.17828 -14.09850 -14.03571 -13.75497 -13.61788 -13.24356 -12.97719 -12.57936 -12.33302 -12.24824 -12.19529 -12.14483 -11.83242 -11.77854 -11.68864 -11.38981 -11.10103 -10.93422 -10.89808 -10.67818 -10.29131 -10.17793 -9.80457 -9.60833 -8.95628 -8.59656 -8.39754 -7.90983 -7.23539 -6.48373 -4.14072 0.17318 0.97690 1.31385 1.86125 2.09968 2.46330 2.55882 2.60840 3.21566 3.24828 3.41014 3.42813 3.52540 3.63669 3.70670 4.16347 4.21341 4.25435 4.31011 4.54260 4.71868 4.80621 4.96513 5.01225 5.08090 5.10654 5.21573 5.23726 5.31804 5.36563 5.43247 5.49453 5.59707 5.63892 5.80817 5.80980 5.89956 6.03950 6.16377 6.29081 6.30094 6.30661 6.55707 6.63179 6.64067 6.85807 7.02938 7.15655 7.37866 7.50372 7.64002 7.77108 7.94532 8.85918 9.45029 10.58195 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.011955 B = 0.002324 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.608878 B =12043.964378 C =14145.219782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.093 3.907 4 C -0.176 4.176 5 C -0.131 4.131 6 C -0.102 4.102 7 C 0.096 3.904 8 C -0.072 4.072 9 C 0.263 3.737 10 N -0.419 5.419 11 C 0.355 3.645 12 N -0.479 5.479 13 C 0.057 3.943 14 C -0.063 4.063 15 C -0.129 4.129 16 C -0.104 4.104 17 C -0.112 4.112 18 C 0.049 3.951 19 N -0.600 5.600 20 H 0.422 0.578 21 C -0.154 4.154 22 C 0.129 3.871 23 O -0.200 6.200 24 C -0.392 4.392 25 H 0.109 0.891 26 C 0.068 3.932 27 N -0.873 5.873 28 Si 0.902 3.098 29 H -0.273 1.273 30 H -0.282 1.282 31 H -0.255 1.255 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.164 0.836 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.152 0.848 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.331 19.086 -0.214 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.047 3.953 4 C -0.195 4.195 5 C -0.150 4.150 6 C -0.103 4.103 7 C 0.070 3.930 8 C -0.078 4.078 9 C -0.051 4.051 10 N -0.095 5.095 11 C 0.091 3.909 12 N -0.199 5.199 13 C -0.063 4.063 14 C -0.082 4.082 15 C -0.149 4.149 16 C -0.124 4.124 17 C -0.133 4.133 18 C -0.061 4.061 19 N -0.211 5.211 20 H 0.261 0.739 21 C -0.174 4.174 22 C 0.077 3.923 23 O -0.105 6.105 24 C -0.467 4.467 25 H 0.126 0.874 26 C -0.137 4.137 27 N -0.509 5.509 28 Si 0.728 3.272 29 H -0.198 1.198 30 H -0.208 1.208 31 H -0.179 1.179 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.181 0.819 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.170 0.830 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.998 17.813 -0.655 19.968 hybrid contribution -0.967 0.149 -0.530 1.113 sum -9.965 17.961 -1.184 20.575 Atomic orbital electron populations 1.22995 0.79552 1.03402 1.00838 1.86166 1.20194 1.26516 1.88696 1.18572 0.89537 0.84633 1.02600 1.20651 0.99089 0.91331 1.08419 1.20896 0.93001 0.96943 1.04182 1.18549 0.92886 0.91720 1.07155 1.22924 0.96818 0.88795 0.84431 1.15125 0.93232 0.89593 1.09854 1.25198 0.92568 0.94102 0.93266 1.81274 1.10974 1.06671 1.10605 1.20821 0.90435 0.85736 0.93879 1.70668 1.13543 1.13648 1.22081 1.19052 0.96370 0.89783 1.01081 1.20110 0.96706 0.92372 0.99016 1.20651 0.99374 0.94464 1.00441 1.20886 0.93890 0.99492 0.98101 1.19958 1.00693 0.89304 1.03380 1.18903 0.93661 0.90636 1.02862 1.43133 1.23838 1.06221 1.47870 0.73889 1.21245 1.01146 0.89507 1.05511 1.18175 0.87661 0.87260 0.99223 1.83686 1.20405 1.26427 1.79948 1.20780 0.77176 0.97011 1.51730 0.87396 1.24440 0.94527 0.99466 0.95259 1.69649 1.03119 1.31714 1.46452 0.86207 0.80332 0.81837 0.78859 1.19846 1.20796 1.17860 0.93036 0.93091 0.88693 0.85592 0.86522 0.81896 0.84999 0.85312 0.85351 0.86053 0.83028 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.30 -5.72 10.27 -33.66 -0.35 -6.06 16 3 C 0.09 1.80 6.72 -38.81 -0.26 1.54 16 4 C -0.18 -2.88 9.01 -39.54 -0.36 -3.23 16 5 C -0.13 -2.08 8.29 -39.05 -0.32 -2.40 16 6 C -0.10 -1.66 5.59 -105.10 -0.59 -2.25 16 7 C 0.10 1.29 9.49 -36.83 -0.35 0.94 16 8 C -0.07 -0.92 5.81 -104.85 -0.61 -1.53 16 9 C 0.26 3.53 11.23 -22.47 -0.25 3.28 16 10 N -0.42 -6.14 17.87 41.84 0.75 -5.40 16 11 C 0.35 4.52 7.72 -154.46 -1.19 3.32 16 12 N -0.48 -6.70 10.79 -8.77 -0.09 -6.79 16 13 C 0.06 0.72 7.22 -84.72 -0.61 0.11 16 14 C -0.06 -0.65 10.05 -39.55 -0.40 -1.05 16 15 C -0.13 -1.04 9.96 -39.98 -0.40 -1.44 16 16 C -0.10 -0.79 10.03 -39.50 -0.40 -1.19 16 17 C -0.11 -0.99 10.07 -39.50 -0.40 -1.38 16 18 C 0.05 0.55 7.30 -83.89 -0.61 -0.06 16 19 N -0.60 -6.51 6.13 -8.47 -0.05 -6.56 16 20 H 0.42 3.63 8.70 -40.82 -0.36 3.27 16 21 C -0.15 -2.98 8.91 -38.90 -0.35 -3.33 16 22 C 0.13 2.84 6.65 -39.05 -0.26 2.58 16 23 O -0.20 -5.10 8.36 -14.71 -0.12 -5.22 16 24 C -0.39 -10.50 9.94 30.88 0.31 -10.19 16 25 H 0.11 2.87 5.44 -52.48 -0.29 2.58 16 26 C 0.07 1.83 5.49 -17.52 -0.10 1.74 16 27 N -0.87 -24.33 13.96 55.48 0.77 -23.55 16 28 Si 0.90 21.33 28.62 -169.99 -4.86 16.46 16 29 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 30 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 31 H -0.25 -6.14 7.11 56.52 0.40 -5.74 16 32 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 33 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.13 1.71 6.27 -52.48 -0.33 1.39 16 36 H 0.12 1.71 5.29 -52.49 -0.28 1.43 16 37 H 0.16 2.01 7.75 -52.49 -0.41 1.61 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.15 2.97 5.63 -52.49 -0.30 2.68 16 43 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -31.49 379.65 -8.38 -39.87 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.99 Total: 4.73 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -6.15 Total: -13.19 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 1.38 Total: -42.30 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.47 Total: -11.29 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.86 Total: 16.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.49 -8.38 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004149646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.930 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds