Wall clock time and date at job start Tue Mar 31 2020 05:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35054 * 119.46713 * 2 1 4 4 C 1.41459 * 121.12704 * 359.95307 * 3 2 1 5 5 O 1.21674 * 119.99912 * 353.06868 * 4 3 2 6 6 O 1.34946 * 119.99875 * 173.05849 * 4 3 2 7 7 C 1.42891 * 117.00084 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47246 * 180.02562 * 7 6 4 9 9 H 1.07998 * 120.00183 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99828 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00534 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99821 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47168 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.47436 * 119.99956 * 12 10 8 15 15 H 1.48501 * 109.47457 * 240.00278 * 12 10 8 16 16 C 1.51519 * 117.73931 * 179.97438 * 3 2 1 17 17 H 1.09000 * 107.95446 * 238.15568 * 16 3 2 18 18 C 1.50693 * 107.95822 * 121.88389 * 16 3 2 19 19 C 1.38257 * 120.00244 * 280.23709 * 18 16 3 20 20 C 1.38212 * 120.00309 * 180.25149 * 19 18 16 21 21 C 1.38252 * 120.00106 * 359.78446 * 20 19 18 22 22 C 1.38215 * 119.99916 * 359.96087 * 21 20 19 23 23 N 1.48021 * 120.00329 * 180.02562 * 22 21 20 24 24 O 1.21793 * 120.00285 * 180.02562 * 23 22 21 25 25 O 1.21803 * 119.99408 * 0.02562 * 23 22 21 26 26 C 1.38214 * 120.00168 * 99.99420 * 18 16 3 27 27 N 1.47260 * 116.94114 * 359.97438 * 16 3 2 28 28 C 1.34766 * 118.42316 * 359.97438 * 27 16 3 29 29 O 1.21558 * 118.93053 * 180.02562 * 28 27 16 30 30 N 1.33900 * 122.14608 * 0.02562 * 28 27 16 31 31 H 1.08998 * 109.46589 * 84.37639 * 1 2 3 32 32 H 1.08995 * 109.46773 * 204.37820 * 1 2 3 33 33 H 1.08998 * 109.46985 * 324.37984 * 1 2 3 34 34 H 1.09003 * 109.47663 * 300.00559 * 7 6 4 35 35 H 1.09008 * 109.46745 * 60.00521 * 7 6 4 36 36 H 0.96994 * 120.00403 * 180.02562 * 11 10 8 37 37 H 1.08007 * 119.99666 * 0.02562 * 19 18 16 38 38 H 1.08001 * 119.99801 * 179.76663 * 20 19 18 39 39 H 1.08001 * 120.00216 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.00185 * 0.02562 * 26 18 16 41 41 H 0.97001 * 120.78708 * 180.02562 * 27 16 3 42 42 H 0.97004 * 118.15838 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1714 1.1758 0.0000 4 6 1.4768 2.4082 -0.0010 5 8 0.2669 2.4245 -0.1290 6 8 2.1561 3.5656 0.1403 7 6 1.3908 4.7723 0.1308 8 6 2.3122 5.9529 0.2985 9 1 3.3759 5.7973 0.4016 10 6 1.7973 7.2317 0.3193 11 7 0.5020 7.4213 0.1933 12 14 2.9395 8.6952 0.5266 13 1 4.3403 8.2168 0.6462 14 1 2.8208 9.5870 -0.6548 15 1 2.5658 9.4452 1.7525 16 6 3.6859 1.1301 0.0006 17 1 4.0379 1.6670 0.8815 18 6 4.1736 1.8727 -1.2166 19 6 4.1661 1.2539 -2.4530 20 6 4.6183 1.9332 -3.5685 21 6 5.0739 3.2330 -3.4488 22 6 5.0765 3.8534 -2.2138 23 7 5.5637 5.2453 -2.0857 24 8 5.5664 5.7918 -0.9973 25 8 5.9620 5.8439 -3.0688 26 6 4.6237 3.1741 -1.0979 27 7 4.3132 -0.2022 0.0017 28 6 3.5141 -1.2874 0.0027 29 8 4.0222 -2.3917 0.0041 30 7 2.1788 -1.1889 0.0021 31 1 -0.3632 0.1007 -1.0227 32 1 -0.3633 -0.9360 0.4242 33 1 -0.3633 0.8354 0.5985 34 1 0.8595 4.8582 -0.8171 35 1 0.6717 4.7529 0.9498 36 1 0.1398 8.3210 0.2075 37 1 3.8103 0.2384 -2.5464 38 1 4.6160 1.4485 -4.5336 39 1 5.4277 3.7636 -4.3204 40 1 4.6262 3.6588 -0.1328 41 1 5.2786 -0.2964 0.0025 42 1 1.6593 -2.0082 0.0033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004491894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:13 Heat of formation + Delta-G solvation = -61.519763 kcal Electronic energy + Delta-G solvation = -33621.192277 eV Core-core repulsion = 28956.640897 eV Total energy + Delta-G solvation = -4664.551380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.120 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95223 -41.65528 -39.84946 -39.38491 -37.42663 -36.16290 -35.96142 -35.49345 -32.85640 -32.49705 -31.82704 -31.27350 -29.32547 -27.62835 -26.33451 -25.63369 -23.92847 -22.92606 -22.67800 -21.66734 -21.61565 -19.25170 -18.97290 -18.27332 -18.15618 -17.14464 -17.05692 -16.79137 -16.57103 -16.52944 -16.23487 -15.91366 -15.54718 -15.36408 -15.06839 -14.66394 -14.32831 -13.86493 -13.76439 -13.56705 -13.39085 -13.07326 -12.73381 -12.38014 -12.17139 -12.03821 -11.71506 -11.63514 -11.61655 -11.13810 -10.96473 -10.90691 -10.85137 -10.73120 -10.69429 -10.13697 -9.96165 -9.74823 -9.62362 -9.52044 -9.26544 -9.17472 -8.54084 -8.40291 -6.16005 -4.21380 0.06849 0.74365 0.97752 1.55987 1.74871 2.17811 2.61807 2.99455 3.22552 3.32814 3.34787 3.42825 3.53445 3.75940 4.06812 4.20939 4.41843 4.45144 4.66842 4.74028 4.84939 4.91666 4.98754 5.03444 5.22041 5.23414 5.43853 5.45150 5.52070 5.57337 5.82067 5.85279 5.93216 6.03913 6.16819 6.28990 6.33028 6.50641 6.74605 6.83540 7.02749 7.20565 7.46823 7.84901 7.86637 8.01783 8.05082 8.53084 8.92806 9.46172 10.94218 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.009968 B = 0.004440 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.243235 B = 6304.392155 C = 8299.883274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.233 3.767 3 C -0.260 4.260 4 C 0.516 3.484 5 O -0.520 6.520 6 O -0.347 6.347 7 C 0.204 3.796 8 C -0.525 4.525 9 H 0.079 0.921 10 C 0.065 3.935 11 N -0.894 5.894 12 Si 0.899 3.101 13 H -0.254 1.254 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.237 3.763 17 H 0.103 0.897 18 C -0.108 4.108 19 C -0.053 4.053 20 C -0.126 4.126 21 C -0.053 4.053 22 C -0.037 4.037 23 N 0.028 4.972 24 O -0.125 6.125 25 O -0.183 6.183 26 C -0.004 4.004 27 N -0.712 5.712 28 C 0.707 3.293 29 O -0.571 6.571 30 N -0.649 5.649 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.022 0.978 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.129 0.871 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.166 0.834 41 H 0.432 0.568 42 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 -17.642 -3.798 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.129 3.871 3 C -0.268 4.268 4 C 0.364 3.636 5 O -0.414 6.414 6 O -0.263 6.263 7 C 0.133 3.867 8 C -0.563 4.563 9 H 0.097 0.903 10 C -0.138 4.138 11 N -0.532 5.532 12 Si 0.725 3.275 13 H -0.177 1.177 14 H -0.209 1.209 15 H -0.210 1.210 16 C 0.132 3.868 17 H 0.121 0.879 18 C -0.111 4.111 19 C -0.071 4.071 20 C -0.145 4.145 21 C -0.072 4.072 22 C -0.120 4.120 23 N 0.549 4.451 24 O -0.349 6.349 25 O -0.393 6.393 26 C -0.024 4.024 27 N -0.371 5.371 28 C 0.408 3.592 29 O -0.447 6.447 30 N -0.293 5.293 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.147 0.853 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.183 0.817 41 H 0.274 0.726 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.173 -18.622 -3.957 19.728 hybrid contribution 0.432 1.110 -0.030 1.192 sum 5.605 -17.512 -3.987 18.814 Atomic orbital electron populations 1.21590 0.86698 1.05011 1.05845 1.20183 0.95244 0.84403 0.87263 1.18895 0.92606 0.91850 1.23498 1.18485 0.85640 0.84913 0.74584 1.90784 1.14916 1.88027 1.47695 1.86124 1.43063 1.15690 1.81400 1.20550 0.91875 0.76625 0.97675 1.21081 0.94744 0.88908 1.51559 0.90287 1.24891 0.95332 0.99016 0.94552 1.69987 1.11506 1.22453 1.49236 0.86363 0.81984 0.81508 0.77634 1.17706 1.20869 1.20956 1.18492 0.90218 0.81924 0.96207 0.87906 1.20065 1.01052 0.94117 0.95824 1.21260 0.94273 0.99881 0.91706 1.21056 1.00330 0.93550 0.99530 1.21058 0.95260 0.94939 0.95979 1.21063 1.10145 0.83718 0.97083 1.43510 0.98326 1.02638 1.00600 1.94633 1.57350 1.68624 1.14297 1.94486 1.49918 1.65299 1.29552 1.21019 0.89308 0.92582 0.99467 1.45375 1.09745 1.03778 1.78246 1.15708 0.81217 0.84910 0.77409 1.91055 1.72447 1.24619 1.56570 1.42290 1.05948 1.09089 1.71924 0.88468 0.91443 0.85600 0.96037 0.95603 0.92539 0.85267 0.83926 0.83221 0.81697 0.72616 0.73308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.71 36.01 0.31 -0.95 16 2 C 0.23 2.41 6.84 -81.62 -0.56 1.85 16 3 C -0.26 -3.40 5.27 -104.13 -0.55 -3.95 16 4 C 0.52 9.20 7.32 31.96 0.23 9.43 16 5 O -0.52 -10.19 12.87 -19.40 -0.25 -10.44 16 6 O -0.35 -7.21 7.21 -41.17 -0.30 -7.50 16 7 C 0.20 5.27 5.13 36.01 0.18 5.45 16 8 C -0.53 -14.34 9.43 -34.44 -0.32 -14.67 16 9 H 0.08 2.10 7.30 -52.49 -0.38 1.72 16 10 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 11 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 12 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 13 H -0.25 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 C 0.24 2.65 3.10 -69.42 -0.22 2.43 16 17 H 0.10 1.14 7.87 -51.93 -0.41 0.73 16 18 C -0.11 -1.30 4.28 -104.63 -0.45 -1.75 16 19 C -0.05 -0.54 9.30 -39.58 -0.37 -0.91 16 20 C -0.13 -1.24 10.05 -39.59 -0.40 -1.64 16 21 C -0.05 -0.65 9.56 -39.58 -0.38 -1.03 16 22 C -0.04 -0.58 6.85 -79.94 -0.55 -1.13 16 23 N 0.03 0.53 4.45 33.96 0.15 0.68 16 24 O -0.12 -2.60 17.94 -29.46 -0.53 -3.13 16 25 O -0.18 -3.43 18.45 -29.46 -0.54 -3.98 16 26 C 0.00 -0.06 7.51 -39.58 -0.30 -0.36 16 27 N -0.71 -6.60 4.81 -60.30 -0.29 -6.89 16 28 C 0.71 7.44 8.63 -87.71 -0.76 6.68 16 29 O -0.57 -7.60 17.94 5.31 0.10 -7.51 16 30 N -0.65 -5.63 5.14 -12.86 -0.07 -5.70 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 33 H 0.13 1.55 5.69 -51.93 -0.30 1.25 16 34 H 0.02 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.03 0.72 8.13 -51.92 -0.42 0.30 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.13 1.15 7.90 -52.48 -0.41 0.74 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.15 1.62 7.61 -52.49 -0.40 1.22 16 40 H 0.17 2.62 7.07 -52.49 -0.37 2.25 16 41 H 0.43 3.29 8.93 -40.82 -0.36 2.93 16 42 H 0.43 2.68 8.58 -40.82 -0.35 2.33 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -34.39 370.15 -8.87 -43.26 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.23 Total: 3.20 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.21 Total: 1.18 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.53 Total: -37.45 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.52 Total: -32.56 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.39 -8.87 -43.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004491894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.257 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds