Wall clock time and date at job start Tue Mar 31 2020 05:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35054 * 119.46713 * 2 1 4 4 C 1.41459 * 121.12704 * 359.95307 * 3 2 1 5 5 O 1.21674 * 119.99912 * 353.06868 * 4 3 2 6 6 O 1.34946 * 119.99875 * 173.05849 * 4 3 2 7 7 C 1.42891 * 117.00084 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47246 * 180.02562 * 7 6 4 9 9 H 1.07998 * 120.00183 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99828 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00534 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99821 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47168 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.47436 * 119.99956 * 12 10 8 15 15 H 1.48501 * 109.47457 * 240.00278 * 12 10 8 16 16 C 1.51519 * 117.73931 * 179.97438 * 3 2 1 17 17 H 1.09000 * 107.95446 * 238.15568 * 16 3 2 18 18 C 1.50693 * 107.95822 * 121.88389 * 16 3 2 19 19 C 1.38257 * 120.00244 * 280.23709 * 18 16 3 20 20 C 1.38212 * 120.00309 * 180.25149 * 19 18 16 21 21 C 1.38252 * 120.00106 * 359.78446 * 20 19 18 22 22 C 1.38215 * 119.99916 * 359.96087 * 21 20 19 23 23 N 1.48021 * 120.00329 * 180.02562 * 22 21 20 24 24 O 1.21793 * 120.00285 * 180.02562 * 23 22 21 25 25 O 1.21803 * 119.99408 * 0.02562 * 23 22 21 26 26 C 1.38214 * 120.00168 * 99.99420 * 18 16 3 27 27 N 1.47260 * 116.94114 * 359.97438 * 16 3 2 28 28 C 1.34766 * 118.42316 * 359.97438 * 27 16 3 29 29 O 1.21558 * 118.93053 * 180.02562 * 28 27 16 30 30 N 1.33900 * 122.14608 * 0.02562 * 28 27 16 31 31 H 1.08998 * 109.46589 * 84.37639 * 1 2 3 32 32 H 1.08995 * 109.46773 * 204.37820 * 1 2 3 33 33 H 1.08998 * 109.46985 * 324.37984 * 1 2 3 34 34 H 1.09003 * 109.47663 * 300.00559 * 7 6 4 35 35 H 1.09008 * 109.46745 * 60.00521 * 7 6 4 36 36 H 0.96994 * 120.00403 * 180.02562 * 11 10 8 37 37 H 1.08007 * 119.99666 * 0.02562 * 19 18 16 38 38 H 1.08001 * 119.99801 * 179.76663 * 20 19 18 39 39 H 1.08001 * 120.00216 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.00185 * 0.02562 * 26 18 16 41 41 H 0.97001 * 120.78708 * 180.02562 * 27 16 3 42 42 H 0.97004 * 118.15838 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1714 1.1758 0.0000 4 6 1.4768 2.4082 -0.0010 5 8 0.2669 2.4245 -0.1290 6 8 2.1561 3.5656 0.1403 7 6 1.3908 4.7723 0.1308 8 6 2.3122 5.9529 0.2985 9 1 3.3759 5.7973 0.4016 10 6 1.7973 7.2317 0.3193 11 7 0.5020 7.4213 0.1933 12 14 2.9395 8.6952 0.5266 13 1 4.3403 8.2168 0.6462 14 1 2.8208 9.5870 -0.6548 15 1 2.5658 9.4452 1.7525 16 6 3.6859 1.1301 0.0006 17 1 4.0379 1.6670 0.8815 18 6 4.1736 1.8727 -1.2166 19 6 4.1661 1.2539 -2.4530 20 6 4.6183 1.9332 -3.5685 21 6 5.0739 3.2330 -3.4488 22 6 5.0765 3.8534 -2.2138 23 7 5.5637 5.2453 -2.0857 24 8 5.5664 5.7918 -0.9973 25 8 5.9620 5.8439 -3.0688 26 6 4.6237 3.1741 -1.0979 27 7 4.3132 -0.2022 0.0017 28 6 3.5141 -1.2874 0.0027 29 8 4.0222 -2.3917 0.0041 30 7 2.1788 -1.1889 0.0021 31 1 -0.3632 0.1007 -1.0227 32 1 -0.3633 -0.9360 0.4242 33 1 -0.3633 0.8354 0.5985 34 1 0.8595 4.8582 -0.8171 35 1 0.6717 4.7529 0.9498 36 1 0.1398 8.3210 0.2075 37 1 3.8103 0.2384 -2.5464 38 1 4.6160 1.4485 -4.5336 39 1 5.4277 3.7636 -4.3204 40 1 4.6262 3.6588 -0.1328 41 1 5.2786 -0.2964 0.0025 42 1 1.6593 -2.0082 0.0033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004491894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:12 Heat of formation + Delta-G solvation = -83.911643 kcal Electronic energy + Delta-G solvation = -33622.163262 eV Core-core repulsion = 28956.640897 eV Total energy + Delta-G solvation = -4665.522365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.120 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.17583 -42.76507 -41.20079 -40.44391 -38.56339 -37.57874 -37.35736 -36.53687 -34.95673 -33.52461 -32.86181 -32.22397 -30.52750 -29.41570 -27.58978 -26.65143 -25.42526 -24.21388 -23.69328 -23.02455 -22.77693 -20.48440 -20.14894 -19.63488 -19.21988 -18.63304 -18.46366 -17.97142 -17.83859 -17.76582 -17.42493 -17.05248 -16.85841 -16.73223 -16.25661 -16.02845 -15.58336 -14.91137 -14.79044 -14.61521 -14.46665 -14.30878 -14.09554 -13.75419 -13.57982 -13.28218 -13.05019 -12.90113 -12.84011 -12.70834 -12.55104 -12.46801 -12.26832 -12.19963 -12.05286 -11.76975 -11.56401 -11.38850 -11.03618 -10.87446 -10.62700 -10.49631 -10.17211 -9.46151 -8.34180 -6.45574 -1.16398 -0.26754 -0.00807 0.33525 0.52306 1.30523 1.38965 1.42427 1.61218 1.67014 1.92833 2.09300 2.24303 2.33121 2.52422 3.01995 3.14847 3.26429 3.51922 3.71931 3.83559 3.88335 3.98731 4.02640 4.10408 4.22857 4.49774 4.56725 4.66148 4.68316 4.76932 4.82606 4.92854 4.96916 5.01480 5.08495 5.24061 5.26959 5.49938 5.55803 5.58354 5.75176 5.79705 6.08427 6.14258 6.55314 6.67662 7.00900 7.04259 7.27907 8.77744 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.009968 B = 0.004440 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.243235 B = 6304.392155 C = 8299.883274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.280 3.720 3 C -0.294 4.294 4 C 0.512 3.488 5 O -0.546 6.546 6 O -0.349 6.349 7 C 0.228 3.772 8 C -0.533 4.533 9 H 0.079 0.921 10 C 0.018 3.982 11 N -0.928 5.928 12 Si 0.958 3.042 13 H -0.254 1.254 14 H -0.281 1.281 15 H -0.270 1.270 16 C 0.248 3.752 17 H 0.097 0.903 18 C -0.108 4.108 19 C -0.040 4.040 20 C -0.108 4.108 21 C -0.054 4.054 22 C -0.063 4.063 23 N 0.031 4.969 24 O -0.195 6.195 25 O -0.172 6.172 26 C -0.021 4.021 27 N -0.696 5.696 28 C 0.711 3.289 29 O -0.590 6.590 30 N -0.630 5.630 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.097 0.903 34 H -0.010 1.010 35 H -0.001 1.001 36 H 0.269 0.731 37 H 0.156 0.844 38 H 0.188 0.812 39 H 0.166 0.834 40 H 0.140 0.860 41 H 0.442 0.558 42 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.957 -21.049 -5.235 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.173 3.827 3 C -0.303 4.303 4 C 0.362 3.638 5 O -0.441 6.441 6 O -0.264 6.264 7 C 0.155 3.845 8 C -0.571 4.571 9 H 0.097 0.903 10 C -0.182 4.182 11 N -0.568 5.568 12 Si 0.782 3.218 13 H -0.177 1.177 14 H -0.206 1.206 15 H -0.195 1.195 16 C 0.142 3.858 17 H 0.115 0.885 18 C -0.110 4.110 19 C -0.058 4.058 20 C -0.126 4.126 21 C -0.073 4.073 22 C -0.147 4.147 23 N 0.545 4.455 24 O -0.405 6.405 25 O -0.389 6.389 26 C -0.041 4.041 27 N -0.356 5.356 28 C 0.411 3.589 29 O -0.468 6.468 30 N -0.273 5.273 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.008 0.992 35 H 0.017 0.983 36 H 0.078 0.922 37 H 0.174 0.826 38 H 0.205 0.795 39 H 0.183 0.817 40 H 0.158 0.842 41 H 0.286 0.714 42 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 5.593 -22.050 -5.267 23.350 hybrid contribution 0.241 1.848 0.291 1.887 sum 5.833 -20.201 -4.976 21.607 Atomic orbital electron populations 1.21609 0.85578 1.06115 1.06007 1.20224 0.95688 0.83938 0.82817 1.18439 0.93466 0.90427 1.27948 1.19116 0.85715 0.85124 0.73799 1.90788 1.15920 1.88212 1.49136 1.86125 1.42441 1.15451 1.82425 1.19867 0.91141 0.78778 0.94740 1.21354 0.94955 0.89796 1.50947 0.90272 1.25719 0.96611 1.01643 0.94182 1.70083 1.13083 1.23264 1.50341 0.85462 0.80040 0.78340 0.77996 1.17701 1.20633 1.19492 1.18235 0.89173 0.82569 0.95810 0.88502 1.20156 1.00622 0.93066 0.97187 1.21618 0.92591 1.00784 0.90849 1.21556 0.97724 0.92088 1.01192 1.21419 0.94961 0.96000 0.94923 1.21323 1.12466 0.81923 0.98945 1.43985 0.97602 1.03915 0.99973 1.94626 1.60580 1.70228 1.15022 1.94419 1.48943 1.66247 1.29270 1.20922 0.90904 0.93839 0.98447 1.45256 1.10203 1.02661 1.77473 1.15737 0.81523 0.84566 0.77085 1.91070 1.72819 1.25391 1.57489 1.42232 1.05654 1.09118 1.70334 0.87681 0.87138 0.88483 0.99231 0.98336 0.92180 0.82624 0.79495 0.81690 0.84221 0.71439 0.71315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.71 71.24 0.62 -1.54 16 2 C 0.28 4.94 6.84 41.09 0.28 5.22 16 3 C -0.29 -7.32 5.27 -19.54 -0.10 -7.43 16 4 C 0.51 18.67 7.32 68.61 0.50 19.17 16 5 O -0.55 -21.99 12.87 19.27 0.25 -21.74 16 6 O -0.35 -15.28 7.21 -58.62 -0.42 -15.70 16 7 C 0.23 12.48 5.13 71.24 0.37 12.84 16 8 C -0.53 -30.64 9.43 25.60 0.24 -30.39 16 9 H 0.08 4.48 7.30 -2.91 -0.02 4.46 16 10 C 0.02 1.03 5.46 84.66 0.46 1.49 16 11 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 12 Si 0.96 46.25 29.54 68.60 2.03 48.28 16 13 H -0.25 -12.15 7.11 99.48 0.71 -11.44 16 14 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 16 C 0.25 5.20 3.10 43.61 0.14 5.34 16 17 H 0.10 2.16 7.87 -2.39 -0.02 2.14 16 18 C -0.11 -2.46 4.28 -19.87 -0.08 -2.55 16 19 C -0.04 -0.69 9.30 22.27 0.21 -0.48 16 20 C -0.11 -1.68 10.05 22.27 0.22 -1.46 16 21 C -0.05 -1.22 9.56 22.27 0.21 -1.01 16 22 C -0.06 -2.00 6.85 36.38 0.25 -1.75 16 23 N 0.03 1.22 4.45 -46.46 -0.21 1.02 16 24 O -0.20 -8.77 17.94 18.90 0.34 -8.43 16 25 O -0.17 -6.57 18.45 18.88 0.35 -6.22 16 26 C -0.02 -0.65 7.51 22.27 0.17 -0.48 16 27 N -0.70 -10.89 4.81 -462.97 -2.22 -13.11 16 28 C 0.71 12.24 8.63 179.33 1.55 13.79 16 29 O -0.59 -13.48 17.94 -3.90 -0.07 -13.55 16 30 N -0.63 -8.27 5.14 -313.38 -1.61 -9.88 16 31 H 0.11 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.11 0.82 8.05 -2.39 -0.02 0.80 16 33 H 0.10 2.29 5.69 -2.39 -0.01 2.28 16 34 H -0.01 -0.61 8.13 -2.39 -0.02 -0.63 16 35 H 0.00 -0.07 8.13 -2.38 -0.02 -0.09 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 37 H 0.16 1.92 7.90 -2.91 -0.02 1.90 16 38 H 0.19 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.17 3.18 7.61 -2.91 -0.02 3.16 16 40 H 0.14 4.90 7.07 -2.91 -0.02 4.87 16 41 H 0.44 5.47 8.93 -92.71 -0.83 4.64 16 42 H 0.44 3.32 8.58 -92.71 -0.80 2.52 16 Total: -1.00 -80.23 370.15 3.25 -76.98 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -0.49 Total: 7.81 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 5.03 Total: 10.77 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -3.76 Total: -78.20 kcal Atomic # 8 Polarization: -66.09 SS G_CDS: 0.44 Total: -65.64 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -80.23 3.25 -76.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004491894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.928 kcal (2) G-P(sol) polarization free energy of solvation -80.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds