Wall clock time and date at job start Tue Mar 31 2020 05:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35048 * 119.46801 * 2 1 4 4 C 1.41449 * 121.12888 * 0.02562 * 3 2 1 5 5 O 1.21679 * 120.00105 * 6.32552 * 4 3 2 6 6 O 1.34945 * 120.00130 * 186.32299 * 4 3 2 7 7 C 1.42904 * 117.00214 * 180.02562 * 6 4 3 8 8 C 1.50693 * 109.46982 * 180.02562 * 7 6 4 9 9 H 1.08001 * 120.00227 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99909 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99903 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00158 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47382 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.47334 * 119.99548 * 12 10 8 15 15 H 1.48494 * 109.47544 * 239.99878 * 12 10 8 16 16 C 1.51524 * 117.73713 * 180.02562 * 3 2 1 17 17 H 1.08998 * 107.95683 * 121.88269 * 16 3 2 18 18 C 1.50705 * 107.95260 * 238.11068 * 16 3 2 19 19 C 1.38262 * 119.99607 * 87.28088 * 18 16 3 20 20 C 1.38213 * 119.99473 * 180.02562 * 19 18 16 21 21 C 1.38253 * 120.00474 * 359.94876 * 20 19 18 22 22 C 1.38213 * 120.00058 * 0.02673 * 21 20 19 23 23 N 1.48015 * 120.00151 * 179.97438 * 22 21 20 24 24 O 1.21798 * 119.99775 * 359.97438 * 23 22 21 25 25 O 1.21804 * 120.00016 * 180.02562 * 23 22 21 26 26 C 1.38212 * 120.00376 * 267.00279 * 18 16 3 27 27 N 1.47256 * 116.94421 * 359.97438 * 16 3 2 28 28 C 1.34773 * 118.41890 * 0.25482 * 27 16 3 29 29 O 1.21560 * 118.92366 * 179.74404 * 28 27 16 30 30 N 1.33896 * 122.14852 * 359.49956 * 28 27 16 31 31 H 1.09003 * 109.46933 * 57.50098 * 1 2 3 32 32 H 1.08992 * 109.47347 * 177.50286 * 1 2 3 33 33 H 1.09007 * 109.47083 * 297.50313 * 1 2 3 34 34 H 1.08997 * 109.46794 * 300.00003 * 7 6 4 35 35 H 1.09000 * 109.46792 * 59.99991 * 7 6 4 36 36 H 0.97000 * 119.99698 * 179.97438 * 11 10 8 37 37 H 1.08001 * 119.99917 * 359.97438 * 19 18 16 38 38 H 1.08007 * 119.99302 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.00226 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.99502 * 0.02562 * 26 18 16 41 41 H 0.97001 * 120.79286 * 179.97438 * 27 16 3 42 42 H 0.97004 * 118.16105 * 180.23505 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1713 1.1758 0.0000 4 6 1.4769 2.4081 0.0005 5 8 0.2658 2.4239 0.1171 6 8 2.1575 3.5662 -0.1282 7 6 1.3922 4.7730 -0.1188 8 6 2.3151 5.9542 -0.2730 9 1 3.3796 5.7990 -0.3682 10 6 1.8005 7.2333 -0.2915 11 7 0.5042 7.4223 -0.1751 12 14 2.9445 8.6976 -0.4819 13 1 4.3461 8.2196 -0.5937 14 1 2.5809 9.4539 -1.7072 15 1 2.8162 9.5835 0.7029 16 6 3.6859 1.1300 -0.0006 17 1 4.0380 1.6675 -0.8811 18 6 4.1735 1.8727 1.2167 19 6 4.3130 1.2090 2.4215 20 6 4.7598 1.8904 3.5380 21 6 5.0681 3.2352 3.4498 22 6 4.9291 3.8985 2.2453 23 7 5.2587 5.3384 2.1510 24 8 5.6520 5.9388 3.1350 25 8 5.1358 5.9231 1.0895 26 6 4.4868 3.2159 1.1273 27 7 4.3132 -0.2023 -0.0006 28 6 3.5140 -1.2875 -0.0053 29 8 4.0221 -2.3918 -0.0100 30 7 2.1787 -1.1890 0.0000 31 1 -0.3633 0.5522 -0.8668 32 1 -0.3633 -1.0266 -0.0448 33 1 -0.3634 0.4746 0.9116 34 1 0.6805 4.7582 -0.9442 35 1 0.8526 4.8537 0.8248 36 1 0.1423 8.3222 -0.1878 37 1 4.0721 0.1585 2.4904 38 1 4.8683 1.3720 4.4793 39 1 5.4168 3.7676 4.3223 40 1 4.3816 3.7333 0.1851 41 1 5.2786 -0.2966 -0.0013 42 1 1.6592 -2.0082 -0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004491895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:17 Heat of formation + Delta-G solvation = -62.807017 kcal Electronic energy + Delta-G solvation = -33751.242141 eV Core-core repulsion = 29086.634942 eV Total energy + Delta-G solvation = -4664.607199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92969 -41.59285 -39.83218 -39.34331 -37.43190 -36.09226 -35.91244 -35.49308 -32.82153 -32.49399 -31.77947 -31.25779 -29.32324 -27.60360 -26.26941 -25.63195 -23.92026 -22.90436 -22.64069 -21.62964 -21.59167 -19.22513 -18.95935 -18.23072 -18.08133 -17.15832 -16.98242 -16.75935 -16.56359 -16.51423 -16.15943 -15.90372 -15.51851 -15.33772 -15.03231 -14.65088 -14.29157 -13.84611 -13.73558 -13.58469 -13.37729 -13.01889 -12.69760 -12.35450 -12.17409 -12.06218 -11.69391 -11.63087 -11.58262 -11.04794 -10.95134 -10.87651 -10.81131 -10.65969 -10.60910 -10.07287 -9.96447 -9.75100 -9.68127 -9.48237 -9.21111 -9.11000 -8.52182 -8.37389 -6.11585 -4.16350 0.11795 0.75453 0.99747 1.62003 1.81657 2.17393 2.61590 3.00519 3.24729 3.33269 3.38813 3.46961 3.57586 3.77286 4.07004 4.22292 4.44594 4.49861 4.69602 4.74698 4.84058 4.91986 5.00679 5.06029 5.24064 5.27007 5.45392 5.48268 5.55291 5.56406 5.84674 5.88073 5.91808 6.07338 6.14367 6.31078 6.35575 6.50417 6.81376 6.84018 7.02198 7.22850 7.49238 7.86049 7.89391 8.05089 8.14933 8.54774 8.99763 9.51518 10.98712 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010440 B = 0.004422 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.438676 B = 6329.812521 C = 8245.793557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.232 3.768 3 C -0.260 4.260 4 C 0.516 3.484 5 O -0.521 6.521 6 O -0.349 6.349 7 C 0.204 3.796 8 C -0.523 4.523 9 H 0.085 0.915 10 C 0.065 3.935 11 N -0.896 5.896 12 Si 0.900 3.100 13 H -0.252 1.252 14 H -0.286 1.286 15 H -0.283 1.283 16 C 0.237 3.763 17 H 0.103 0.897 18 C -0.110 4.110 19 C -0.057 4.057 20 C -0.127 4.127 21 C -0.055 4.055 22 C -0.037 4.037 23 N 0.025 4.975 24 O -0.192 6.192 25 O -0.109 6.109 26 C -0.006 4.006 27 N -0.712 5.712 28 C 0.708 3.292 29 O -0.570 6.570 30 N -0.648 5.648 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.026 0.974 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.432 0.568 42 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.906 -17.740 3.510 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.128 3.872 3 C -0.268 4.268 4 C 0.362 3.638 5 O -0.414 6.414 6 O -0.265 6.265 7 C 0.132 3.868 8 C -0.561 4.561 9 H 0.103 0.897 10 C -0.137 4.137 11 N -0.534 5.534 12 Si 0.726 3.274 13 H -0.175 1.175 14 H -0.212 1.212 15 H -0.209 1.209 16 C 0.132 3.868 17 H 0.121 0.879 18 C -0.113 4.113 19 C -0.075 4.075 20 C -0.146 4.146 21 C -0.074 4.074 22 C -0.120 4.120 23 N 0.546 4.454 24 O -0.398 6.398 25 O -0.337 6.337 26 C -0.025 4.025 27 N -0.372 5.372 28 C 0.408 3.592 29 O -0.447 6.447 30 N -0.292 5.292 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.189 0.811 41 H 0.274 0.726 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.619 -18.749 3.682 19.916 hybrid contribution 0.374 1.135 0.048 1.196 sum 5.993 -17.614 3.729 18.976 Atomic orbital electron populations 1.21295 0.86605 1.02562 1.06933 1.20173 0.95225 0.84439 0.87399 1.18918 0.92607 0.91864 1.23439 1.18485 0.85712 0.84868 0.74691 1.90850 1.14795 1.88385 1.47396 1.86125 1.43001 1.15757 1.81630 1.20570 0.91944 0.76654 0.97627 1.21176 0.94858 0.88705 1.51386 0.89661 1.24883 0.95264 0.99041 0.94553 1.70002 1.11524 1.22370 1.49520 0.86348 0.82170 0.81466 0.77411 1.17509 1.21243 1.20949 1.18489 0.90186 0.81871 0.96260 0.87894 1.20083 1.01566 0.93498 0.96129 1.21266 0.94239 1.00273 0.91719 1.21048 1.01041 0.93083 0.99399 1.21059 0.95360 0.94788 0.96231 1.21084 1.11461 0.81905 0.97530 1.43529 0.98262 1.02919 1.00678 1.94477 1.49313 1.67559 1.28479 1.94663 1.53901 1.68225 1.16873 1.21150 0.88870 0.93042 0.99473 1.45368 1.09746 1.03821 1.78252 1.15706 0.81219 0.84907 0.77403 1.91057 1.72443 1.24614 1.56570 1.42296 1.05961 1.09027 1.71903 0.87656 0.91692 0.87517 0.95642 0.96150 0.92641 0.85210 0.84008 0.83303 0.81132 0.72597 0.73294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 8.40 36.00 0.30 -0.79 16 2 C 0.23 2.40 6.84 -81.62 -0.56 1.84 16 3 C -0.26 -3.40 5.30 -104.13 -0.55 -3.95 16 4 C 0.52 9.19 7.37 31.95 0.24 9.42 16 5 O -0.52 -10.25 12.91 -19.40 -0.25 -10.50 16 6 O -0.35 -7.20 6.43 -41.17 -0.26 -7.46 16 7 C 0.20 5.22 5.13 36.00 0.18 5.41 16 8 C -0.52 -14.15 9.43 -34.44 -0.32 -14.48 16 9 H 0.09 2.22 5.80 -52.49 -0.30 1.92 16 10 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 11 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 12 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 13 H -0.25 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 16 C 0.24 2.65 3.14 -69.41 -0.22 2.43 16 17 H 0.10 1.14 7.95 -51.93 -0.41 0.72 16 18 C -0.11 -1.33 4.48 -104.62 -0.47 -1.80 16 19 C -0.06 -0.58 9.29 -39.58 -0.37 -0.95 16 20 C -0.13 -1.25 10.05 -39.59 -0.40 -1.65 16 21 C -0.06 -0.69 9.56 -39.58 -0.38 -1.06 16 22 C -0.04 -0.59 6.85 -79.95 -0.55 -1.13 16 23 N 0.03 0.49 4.45 33.96 0.15 0.64 16 24 O -0.19 -3.69 18.45 -29.46 -0.54 -4.24 16 25 O -0.11 -2.35 16.67 -29.46 -0.49 -2.85 16 26 C -0.01 -0.09 7.36 -39.58 -0.29 -0.38 16 27 N -0.71 -6.56 4.50 -60.29 -0.27 -6.83 16 28 C 0.71 7.40 8.63 -87.71 -0.76 6.65 16 29 O -0.57 -7.55 17.94 5.31 0.10 -7.46 16 30 N -0.65 -5.62 5.14 -12.86 -0.07 -5.69 16 31 H 0.11 1.15 7.27 -51.93 -0.38 0.77 16 32 H 0.06 0.37 7.85 -51.93 -0.41 -0.04 16 33 H 0.11 1.16 7.24 -51.92 -0.38 0.78 16 34 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 35 H 0.02 0.58 8.13 -51.93 -0.42 0.16 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.13 1.14 7.66 -52.49 -0.40 0.74 16 38 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.15 1.65 7.61 -52.49 -0.40 1.25 16 40 H 0.17 2.85 6.32 -52.48 -0.33 2.52 16 41 H 0.43 3.25 8.93 -40.82 -0.36 2.88 16 42 H 0.43 2.66 8.44 -40.82 -0.34 2.32 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -34.34 365.59 -8.77 -43.11 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.12 Total: 3.29 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -4.24 Total: 1.27 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.55 Total: -37.54 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.45 Total: -32.51 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.34 -8.77 -43.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004491895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.695 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds