Wall clock time and date at job start Tue Mar 31 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86798 * 119.99696 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99790 * 3 2 1 5 5 H 1.48488 * 109.47305 * 30.00517 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00038 * 3 2 1 7 7 C 1.38906 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99552 * 179.97438 * 7 2 1 9 9 O 1.34786 * 120.00095 * 0.27793 * 7 2 1 10 10 C 1.34712 * 116.99820 * 179.72633 * 9 7 2 11 11 O 1.21516 * 120.00392 * 359.97438 * 10 9 7 12 12 C 1.47658 * 119.99851 * 179.97438 * 10 9 7 13 13 C 1.38824 * 121.23164 * 269.99696 * 12 10 9 14 14 C 1.40477 * 119.93357 * 179.97438 * 13 12 10 15 15 N 1.33090 * 121.07121 * 0.02562 * 14 13 12 16 16 C 1.33082 * 122.94439 * 359.97438 * 15 14 13 17 17 C 1.40785 * 121.09625 * 180.02562 * 16 15 14 18 18 C 1.36116 * 119.74541 * 180.02562 * 17 16 15 19 19 C 1.39267 * 121.10519 * 0.02562 * 18 17 16 20 20 C 1.36442 * 120.78212 * 359.97438 * 19 18 17 21 21 C 1.39764 * 119.60018 * 359.68647 * 20 19 18 22 22 C 1.47351 * 110.15107 * 180.02562 * 14 13 12 23 23 C 1.34994 * 125.82782 * 180.02562 * 22 14 13 24 24 C 1.46303 * 119.99423 * 179.97438 * 23 22 14 25 25 C 1.36694 * 125.98919 * 179.71596 * 24 23 22 26 26 C 1.40556 * 106.69760 * 179.85154 * 25 24 23 27 27 C 1.34996 * 107.12159 * 0.40488 * 26 25 24 28 28 O 1.34224 * 108.77853 * 359.74781 * 27 26 25 29 29 C 1.50830 * 108.33815 * 359.97438 * 22 14 13 30 30 C 1.50895 * 130.32001 * 359.97409 * 13 12 10 31 31 H 0.96991 * 119.99797 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.12846 * 359.97438 * 17 16 15 33 33 H 1.08005 * 119.44452 * 180.02562 * 18 17 16 34 34 H 1.08008 * 119.61263 * 179.97438 * 19 18 17 35 35 H 1.07992 * 120.19962 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.00400 * 359.97413 * 23 22 14 37 37 H 1.07995 * 126.65387 * 359.97438 * 25 24 23 38 38 H 1.08004 * 126.44260 * 180.18924 * 26 25 24 39 39 H 1.07992 * 125.60968 * 179.74174 * 27 26 25 40 40 H 1.08996 * 110.23855 * 119.00960 * 29 22 14 41 41 H 1.09002 * 110.23888 * 240.99421 * 29 22 14 42 42 H 1.08999 * 110.10081 * 299.20084 * 30 13 12 43 43 H 1.09005 * 110.09416 * 60.80785 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4951 2.0465 -1.4001 5 1 1.4451 2.6526 0.7001 6 1 3.5451 1.4402 0.7001 7 6 2.0082 -1.2030 -0.0005 8 1 3.0882 -1.2029 -0.0010 9 8 1.3342 -2.3702 -0.0067 10 6 2.0680 -3.5000 -0.0126 11 8 3.2815 -3.4364 -0.0127 12 6 1.3976 -4.8156 -0.0190 13 6 1.0713 -5.4630 1.1649 14 6 0.4332 -6.7139 1.1270 15 7 0.1328 -7.2969 -0.0311 16 6 0.4093 -6.7474 -1.2112 17 6 0.0733 -7.3988 -2.4132 18 6 0.3694 -6.8118 -3.6050 19 6 1.0025 -5.5726 -3.6591 20 6 1.3431 -4.9119 -2.5149 21 6 1.0472 -5.4829 -1.2740 22 6 0.1887 -7.2007 2.4961 23 6 -0.4050 -8.3674 2.8257 24 6 -0.5832 -8.7254 4.2330 25 6 -1.1697 -9.8671 4.7033 26 6 -1.1231 -9.7965 6.1063 27 6 -0.5272 -8.6281 6.4260 28 8 -0.2029 -7.9846 5.2936 29 6 0.7160 -6.1732 3.4663 30 6 1.2890 -5.0449 2.5984 31 1 -0.4849 0.8400 0.0004 32 1 -0.4169 -8.3609 -2.3897 33 1 0.1091 -7.3157 -4.5242 34 1 1.2266 -5.1291 -4.6181 35 1 1.8341 -3.9516 -2.5678 36 1 -0.7483 -9.0365 2.0506 37 1 -1.5862 -10.6688 4.1117 38 1 -1.4971 -10.5363 6.7987 39 1 -0.3421 -8.2701 7.4278 40 1 -0.0930 -5.7943 4.0909 41 1 1.5002 -6.6076 4.0863 42 1 2.3542 -4.9243 2.7957 43 1 0.7621 -4.1125 2.8007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004516664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:34 Heat of formation + Delta-G solvation = -11.516128 kcal Electronic energy + Delta-G solvation = -30619.176147 eV Core-core repulsion = 26367.642351 eV Total energy + Delta-G solvation = -4251.533796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.115 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.36767 -42.21078 -40.91122 -39.53274 -37.48088 -36.42766 -34.96922 -34.41094 -33.97962 -33.13189 -31.33284 -30.35755 -29.16335 -27.94449 -26.16962 -25.53621 -24.26093 -23.45098 -22.55637 -22.24210 -21.81197 -20.31897 -20.03847 -19.27530 -18.68293 -18.34687 -17.65486 -17.10695 -17.01799 -16.48906 -16.43185 -16.29039 -16.22027 -15.73313 -15.48244 -15.24368 -15.09017 -15.01804 -14.55698 -14.27792 -13.79120 -13.73512 -13.53085 -13.36650 -13.26101 -13.10462 -12.91488 -12.90333 -12.70372 -12.60314 -12.50223 -12.39841 -12.31959 -12.15095 -11.65320 -11.43514 -11.22064 -10.81604 -10.70523 -10.64907 -9.86636 -9.38495 -8.65413 -8.59608 -6.47060 -1.18201 -0.54665 0.21154 0.68042 1.03007 1.28913 1.34020 1.45850 1.48357 1.77813 1.98391 2.10269 2.15080 2.42815 2.64401 2.84778 2.92348 3.05073 3.44503 3.46392 3.67753 3.77250 3.95442 4.01944 4.09461 4.13794 4.16984 4.23458 4.24496 4.26152 4.40924 4.56522 4.64999 4.71835 4.80324 4.85670 4.91766 4.93229 4.94610 5.02044 5.04068 5.15701 5.22025 5.26567 5.33061 5.36974 5.40657 5.66462 5.66541 5.78048 6.22943 6.35190 6.60725 6.76846 7.53105 8.54594 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.008758 B = 0.003103 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.342026 B = 9021.176700 C =11638.703807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.002 3.998 3 Si 1.021 2.979 4 H -0.257 1.257 5 H -0.256 1.256 6 H -0.261 1.261 7 C -0.428 4.428 8 H 0.086 0.914 9 O -0.225 6.225 10 C 0.450 3.550 11 O -0.567 6.567 12 C -0.051 4.051 13 C -0.114 4.114 14 C 0.180 3.820 15 N -0.462 5.462 16 C 0.117 3.883 17 C -0.087 4.087 18 C -0.087 4.087 19 C -0.091 4.091 20 C -0.128 4.128 21 C -0.091 4.091 22 C -0.090 4.090 23 C -0.011 4.011 24 C -0.019 4.019 25 C -0.176 4.176 26 C -0.227 4.227 27 C -0.029 4.029 28 O -0.182 6.182 29 C -0.061 4.061 30 C -0.087 4.087 31 H 0.283 0.717 32 H 0.170 0.830 33 H 0.184 0.816 34 H 0.162 0.838 35 H 0.099 0.901 36 H 0.172 0.828 37 H 0.170 0.830 38 H 0.174 0.826 39 H 0.237 0.763 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 -19.817 5.447 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.200 4.200 3 Si 0.839 3.161 4 H -0.181 1.181 5 H -0.180 1.180 6 H -0.185 1.185 7 C -0.503 4.503 8 H 0.103 0.897 9 O -0.132 6.132 10 C 0.297 3.703 11 O -0.465 6.465 12 C -0.060 4.060 13 C -0.116 4.116 14 C 0.030 3.970 15 N -0.170 5.170 16 C -0.005 4.005 17 C -0.105 4.105 18 C -0.106 4.106 19 C -0.109 4.109 20 C -0.147 4.147 21 C -0.093 4.093 22 C -0.091 4.091 23 C -0.031 4.031 24 C -0.068 4.068 25 C -0.196 4.196 26 C -0.246 4.246 27 C -0.097 4.097 28 O -0.078 6.078 29 C -0.098 4.098 30 C -0.125 4.125 31 H 0.092 0.908 32 H 0.188 0.812 33 H 0.201 0.799 34 H 0.180 0.820 35 H 0.117 0.883 36 H 0.189 0.811 37 H 0.187 0.813 38 H 0.191 0.809 39 H 0.253 0.747 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.902 -20.136 5.254 21.380 hybrid contribution 1.014 1.998 0.010 2.240 sum -3.888 -18.138 5.264 19.283 Atomic orbital electron populations 1.70056 1.07904 1.29882 1.45273 1.26686 0.96879 1.02376 0.94027 0.84590 0.77762 0.73932 0.79838 1.18117 1.17985 1.18498 1.21563 0.92398 0.80591 1.55715 0.89653 1.84024 1.39918 1.13929 1.75352 1.21081 0.85694 0.85698 0.77779 1.90627 1.15895 1.88123 1.51852 1.20238 0.99499 0.91915 0.94330 1.21737 0.97678 0.96683 0.95544 1.20737 0.93562 0.90033 0.92652 1.67256 1.18373 1.34604 0.96739 1.18997 0.97789 0.90576 0.93154 1.21209 0.99465 1.01141 0.88687 1.21412 0.95822 0.94110 0.99294 1.21420 0.96049 0.95296 0.98091 1.20929 1.01298 1.00030 0.92484 1.19790 1.00766 0.96571 0.92189 1.20749 1.02505 0.97069 0.88760 1.21001 0.96524 0.95096 0.90480 1.20653 1.05895 0.93399 0.86871 1.22337 1.02917 0.98493 0.95815 1.22131 1.06482 1.00272 0.95728 1.25069 1.00791 0.93508 0.90348 1.84198 1.64218 1.44609 1.14761 1.20806 1.01563 0.91805 0.95632 1.20908 1.02789 1.00442 0.88329 0.90751 0.81243 0.79851 0.82007 0.88280 0.81089 0.81255 0.80880 0.74702 0.87995 0.87546 0.89497 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.66 13.67 21.65 0.30 -53.36 16 2 C 0.00 0.11 5.50 84.92 0.47 0.58 16 3 Si 1.02 43.46 29.55 68.60 2.03 45.49 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.43 -26.69 9.65 67.98 0.66 -26.04 16 8 H 0.09 5.37 6.86 -2.91 -0.02 5.35 16 9 O -0.23 -14.21 9.75 12.24 0.12 -14.09 16 10 C 0.45 25.58 6.11 70.31 0.43 26.01 16 11 O -0.57 -34.27 16.35 19.79 0.32 -33.95 16 12 C -0.05 -2.48 5.95 -18.53 -0.11 -2.59 16 13 C -0.11 -4.79 6.13 -19.12 -0.12 -4.91 16 14 C 0.18 6.50 7.12 41.90 0.30 6.80 16 15 N -0.46 -16.22 10.30 -177.99 -1.83 -18.05 16 16 C 0.12 4.17 6.62 40.45 0.27 4.43 16 17 C -0.09 -2.21 9.99 22.40 0.22 -1.98 16 18 C -0.09 -1.85 9.94 22.02 0.22 -1.63 16 19 C -0.09 -2.47 9.97 22.10 0.22 -2.25 16 20 C -0.13 -5.03 9.48 22.22 0.21 -4.82 16 21 C -0.09 -3.87 5.90 -19.91 -0.12 -3.99 16 22 C -0.09 -2.57 6.16 -18.17 -0.11 -2.68 16 23 C -0.01 -0.25 10.03 23.62 0.24 -0.01 16 24 C -0.02 -0.40 6.94 24.01 0.17 -0.23 16 25 C -0.18 -2.91 10.86 22.47 0.24 -2.67 16 26 C -0.23 -3.09 10.88 22.09 0.24 -2.85 16 27 C -0.03 -0.40 12.08 67.07 0.81 0.41 16 28 O -0.18 -3.68 8.36 -7.16 -0.06 -3.74 16 29 C -0.06 -1.67 5.03 30.04 0.15 -1.52 16 30 C -0.09 -3.13 6.51 30.06 0.20 -2.94 16 31 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 35 H 0.10 4.42 7.35 -2.91 -0.02 4.40 16 36 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 39 H 0.24 1.33 8.06 -2.91 -0.02 1.30 16 40 H 0.10 2.54 7.80 -2.39 -0.02 2.52 16 41 H 0.11 2.52 7.80 -2.39 -0.02 2.50 16 42 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 Total: -1.00 -84.32 380.97 6.52 -77.80 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 1.07 Total: 22.78 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 4.58 Total: -22.88 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -1.54 Total: -71.41 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: 0.38 Total: -51.77 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -84.32 6.52 -77.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004516664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.281 kcal (2) G-P(sol) polarization free energy of solvation -84.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds