Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47233 * 2 1 4 4 C 1.46505 * 120.00267 * 269.99841 * 3 2 1 5 5 C 1.52995 * 109.47080 * 277.87076 * 4 3 2 6 6 C 1.34776 * 120.00092 * 90.00164 * 3 2 1 7 7 O 1.21625 * 119.99595 * 7.04754 * 6 3 2 8 8 C 1.47279 * 120.00160 * 187.04841 * 6 3 2 9 9 C 1.37964 * 126.80954 * 331.00009 * 8 6 3 10 10 N 1.34155 * 107.89051 * 180.13623 * 9 8 6 11 11 C 1.46498 * 125.16737 * 179.84256 * 10 9 8 12 12 C 1.50694 * 109.47209 * 124.72454 * 11 10 9 13 13 H 1.07996 * 120.00348 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99907 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99971 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00000 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47266 * 59.99760 * 16 14 12 18 18 H 1.48500 * 109.47168 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.46981 * 299.99508 * 16 14 12 20 20 N 1.39778 * 109.67192 * 359.58432 * 10 9 8 21 21 C 1.31364 * 109.08150 * 0.25941 * 20 10 9 22 22 C 1.48281 * 126.51582 * 180.02562 * 21 20 10 23 23 C 1.39391 * 120.11652 * 144.69644 * 22 21 20 24 24 C 1.37977 * 119.88478 * 179.79135 * 23 22 21 25 25 C 1.38447 * 120.11664 * 0.48847 * 24 23 22 26 26 Cl 1.73602 * 119.88840 * 179.76889 * 25 24 23 27 27 C 1.38446 * 120.22475 * 359.73884 * 25 24 23 28 28 C 1.37986 * 120.11125 * 0.02758 * 27 25 24 29 29 H 1.08999 * 109.47073 * 300.00305 * 1 2 3 30 30 H 1.09008 * 109.47081 * 59.99833 * 1 2 3 31 31 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46561 * 239.99819 * 2 1 3 33 33 H 1.09002 * 109.46682 * 120.00251 * 2 1 3 34 34 H 1.09001 * 109.46767 * 37.87183 * 4 3 2 35 35 H 1.08994 * 109.47075 * 157.86988 * 4 3 2 36 36 H 1.08996 * 109.47349 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47407 * 299.99714 * 5 4 3 38 38 H 1.09008 * 109.47203 * 59.99982 * 5 4 3 39 39 H 1.07996 * 126.06111 * 359.97438 * 9 8 6 40 40 H 1.09009 * 109.47148 * 244.72850 * 11 10 9 41 41 H 1.09003 * 109.46388 * 4.72425 * 11 10 9 42 42 H 0.96994 * 120.00454 * 180.02562 * 15 14 12 43 43 H 1.07998 * 120.05399 * 0.02562 * 23 22 21 44 44 H 1.08003 * 119.94234 * 180.20778 * 24 23 22 45 45 H 1.08000 * 119.94476 * 179.97438 * 27 25 24 46 46 H 1.08003 * 120.05701 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6377 1.6747 -1.8091 6 6 2.2430 2.0165 1.1672 7 8 2.1644 1.4065 2.2165 8 6 2.5836 3.4494 1.1720 9 6 3.2379 4.1469 0.1776 10 7 3.3517 5.4229 0.5757 11 6 3.9901 6.4933 -0.1942 12 6 3.0207 7.6338 -0.3683 13 1 2.0284 7.5682 0.0528 14 6 3.4006 8.7612 -1.0653 15 7 4.6092 8.8414 -1.5777 16 14 2.1992 10.1753 -1.2805 17 1 1.8020 10.6946 0.0527 18 1 2.8460 11.2597 -2.0622 19 1 0.9943 9.6953 -2.0040 20 7 2.7634 5.5774 1.8342 21 6 2.2890 4.4187 2.2317 22 6 1.5880 4.1436 3.5090 23 6 0.5494 3.2148 3.5509 24 6 -0.0967 2.9593 4.7430 25 6 0.2781 3.6309 5.8942 26 17 -0.5429 3.3092 7.3896 27 6 1.3058 4.5578 5.8569 28 6 1.9616 4.8171 4.6708 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.4941 1.7910 -1.9890 35 1 2.2330 3.1494 -1.1074 36 1 3.8193 2.1881 -2.7532 37 1 4.4062 1.9555 -1.0888 38 1 3.6673 0.5970 -1.9705 39 1 3.5973 3.7376 -0.7549 40 1 4.8742 6.8457 0.3374 41 1 4.2824 6.1122 -1.1727 42 1 4.8766 9.6346 -2.0677 43 1 0.2536 2.6933 2.6527 44 1 -0.8993 2.2374 4.7772 45 1 1.5942 5.0795 6.7576 46 1 2.7629 5.5406 4.6427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004516912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = 61.869993 kcal Electronic energy + Delta-G solvation = -29980.507514 eV Core-core repulsion = 25897.848975 eV Total energy + Delta-G solvation = -4082.658539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.93843 -39.17543 -38.89831 -36.46089 -36.03448 -33.92372 -32.61239 -32.32927 -31.00302 -30.33653 -29.81609 -29.23966 -27.06578 -23.97401 -23.85847 -23.58103 -22.73696 -22.15367 -20.93898 -19.96650 -18.82283 -17.15042 -16.98534 -16.48393 -16.35620 -15.88036 -15.38908 -15.19057 -14.90719 -14.50598 -14.23287 -14.07208 -13.88184 -13.61381 -13.41552 -13.40412 -13.28460 -12.76673 -12.68548 -12.45823 -12.33259 -12.12481 -12.04300 -11.77073 -11.53944 -11.48760 -11.40403 -11.17491 -11.08897 -11.06595 -10.93826 -10.76079 -10.39917 -10.31249 -9.92734 -9.57732 -9.17661 -8.90433 -8.75927 -8.63065 -8.34677 -7.81564 -6.39041 -4.45432 1.03372 1.46491 2.02788 2.15760 2.67468 2.97862 3.17592 3.21783 3.22445 3.29243 3.53215 3.95267 4.19741 4.57494 4.79669 4.83311 4.90796 4.97087 4.97434 5.02485 5.04488 5.23915 5.28787 5.35007 5.38322 5.43319 5.45419 5.54725 5.62082 5.72659 5.75299 5.78411 5.89028 5.91260 6.04137 6.09539 6.14088 6.20151 6.32492 6.52883 6.64238 6.68808 6.79178 6.87520 6.99182 7.44764 7.52181 7.66341 7.67734 8.22402 8.47627 8.61709 9.21598 10.69828 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.006782 B = 0.003683 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4127.544840 B = 7600.730046 C =10891.013311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 N -0.614 5.614 4 C 0.081 3.919 5 C -0.178 4.178 6 C 0.600 3.400 7 O -0.541 6.541 8 C -0.305 4.305 9 C 0.083 3.917 10 N -0.310 5.310 11 C 0.250 3.750 12 C -0.535 4.535 13 H 0.070 0.930 14 C 0.066 3.934 15 N -0.892 5.892 16 Si 0.908 3.092 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.274 1.274 20 N -0.254 5.254 21 C 0.127 3.873 22 C 0.010 3.990 23 C -0.056 4.056 24 C -0.114 4.114 25 C -0.032 4.032 26 Cl -0.082 7.082 27 C -0.116 4.116 28 C -0.080 4.080 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.188 0.812 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.270 0.730 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.997 -15.250 3.515 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.348 5.348 4 C -0.042 4.042 5 C -0.236 4.236 6 C 0.391 3.609 7 O -0.419 6.419 8 C -0.321 4.321 9 C -0.070 4.070 10 N -0.086 5.086 11 C 0.133 3.867 12 C -0.573 4.573 13 H 0.088 0.912 14 C -0.137 4.137 15 N -0.530 5.530 16 Si 0.735 3.265 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.199 1.199 20 N -0.075 5.075 21 C -0.040 4.040 22 C 0.008 3.992 23 C -0.076 4.076 24 C -0.132 4.132 25 C -0.059 4.059 26 Cl -0.053 7.053 27 C -0.135 4.135 28 C -0.099 4.099 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.204 0.796 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.151 0.849 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.717 -14.074 4.261 15.777 hybrid contribution -0.556 -0.023 -0.633 0.843 sum -6.273 -14.097 3.628 15.851 Atomic orbital electron populations 1.22138 0.96184 1.01860 1.02363 1.21319 0.94065 0.82578 1.02911 1.47807 1.67032 1.13985 1.05960 1.22093 0.97108 0.99672 0.85327 1.22281 0.97369 1.02308 1.01656 1.17324 0.75443 0.85225 0.82901 1.90752 1.52845 1.67259 1.31063 1.20906 1.19031 0.94377 0.97832 1.23494 0.98853 0.85894 0.98752 1.49302 1.39004 1.07872 1.12467 1.19947 0.93777 0.83239 0.89688 1.21145 0.99892 1.00435 1.35863 0.91154 1.24922 0.95672 0.98436 0.94712 1.69891 1.18037 1.29747 1.35332 0.86369 0.80610 0.80875 0.78620 1.19760 1.20939 1.19942 1.77438 1.13751 1.19993 0.96354 1.21556 0.98982 0.90059 0.93383 1.17765 0.94945 0.96605 0.89868 1.21003 0.93705 0.95234 0.97646 1.20843 1.01159 1.00305 0.90923 1.20945 0.97314 1.00438 0.87193 1.98346 1.78438 1.94963 1.33587 1.20891 0.95643 0.98155 0.98790 1.21201 0.99456 0.98482 0.90802 0.92265 0.92654 0.91863 0.90985 0.89796 0.90694 0.88061 0.91003 0.91978 0.92130 0.79572 0.93053 0.92328 0.92062 0.85280 0.85062 0.84895 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.24 37.16 0.38 -1.17 16 2 C 0.11 1.16 6.19 -4.04 -0.03 1.14 16 3 N -0.61 -7.63 2.48 -175.01 -0.43 -8.06 16 4 C 0.08 0.85 5.65 -4.04 -0.02 0.83 16 5 C -0.18 -1.60 9.23 37.16 0.34 -1.26 16 6 C 0.60 9.59 6.64 -12.59 -0.08 9.51 16 7 O -0.54 -9.80 14.17 5.26 0.07 -9.72 16 8 C -0.31 -5.36 5.84 -102.95 -0.60 -5.96 16 9 C 0.08 1.41 9.01 -16.64 -0.15 1.26 16 10 N -0.31 -6.42 3.62 -62.04 -0.22 -6.64 16 11 C 0.25 5.75 6.21 -5.20 -0.03 5.72 16 12 C -0.54 -13.80 9.21 -34.44 -0.32 -14.12 16 13 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 14 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -23.77 13.29 55.43 0.74 -23.03 16 16 Si 0.91 20.33 29.54 -169.99 -5.02 15.31 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 N -0.25 -5.46 12.27 34.57 0.42 -5.03 16 21 C 0.13 2.44 6.93 -80.56 -0.56 1.88 16 22 C 0.01 0.18 5.67 -104.91 -0.59 -0.42 16 23 C -0.06 -0.88 8.02 -39.25 -0.31 -1.19 16 24 C -0.11 -1.56 9.81 -39.60 -0.39 -1.95 16 25 C -0.03 -0.43 6.32 -39.43 -0.25 -0.68 16 26 Cl -0.08 -0.97 28.95 -51.86 -1.50 -2.47 16 27 C -0.12 -1.58 9.81 -39.60 -0.39 -1.97 16 28 C -0.08 -1.25 9.76 -39.24 -0.38 -1.63 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.57 7.90 -51.93 -0.41 0.16 16 33 H 0.08 0.97 7.34 -51.93 -0.38 0.58 16 34 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 35 H 0.10 1.23 4.03 -51.93 -0.21 1.02 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.63 7.42 -51.93 -0.39 0.25 16 38 H 0.06 0.49 7.98 -51.92 -0.41 0.08 16 39 H 0.19 2.54 4.25 -52.49 -0.22 2.32 16 40 H 0.05 1.26 8.14 -51.92 -0.42 0.84 16 41 H 0.06 1.29 8.05 -51.93 -0.42 0.88 16 42 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.13 2.02 6.52 -52.49 -0.34 1.68 16 44 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 45 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 46 H 0.14 2.09 8.06 -52.48 -0.42 1.66 16 LS Contribution 398.26 15.07 6.00 6.00 Total: -1.00 -29.40 398.26 -9.56 -38.96 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.13 Total: 3.08 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -3.48 Total: -8.38 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.50 Total: -42.77 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.40 -9.56 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004516912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.830 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds