Wall clock time and date at job start Tue Mar 31 2020 05:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47233 * 2 1 4 4 C 1.46505 * 120.00267 * 269.99841 * 3 2 1 5 5 C 1.52995 * 109.47080 * 277.87076 * 4 3 2 6 6 C 1.34776 * 120.00092 * 90.00164 * 3 2 1 7 7 O 1.21625 * 119.99595 * 7.04754 * 6 3 2 8 8 C 1.47279 * 120.00160 * 187.04841 * 6 3 2 9 9 C 1.37964 * 126.80954 * 331.00009 * 8 6 3 10 10 N 1.34155 * 107.89051 * 180.13623 * 9 8 6 11 11 C 1.46498 * 125.16737 * 179.84256 * 10 9 8 12 12 C 1.50694 * 109.47209 * 124.72454 * 11 10 9 13 13 H 1.07996 * 120.00348 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99907 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99971 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00000 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47266 * 59.99760 * 16 14 12 18 18 H 1.48500 * 109.47168 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.46981 * 299.99508 * 16 14 12 20 20 N 1.39778 * 109.67192 * 359.58432 * 10 9 8 21 21 C 1.31364 * 109.08150 * 0.25941 * 20 10 9 22 22 C 1.48281 * 126.51582 * 180.02562 * 21 20 10 23 23 C 1.39391 * 120.11652 * 144.69644 * 22 21 20 24 24 C 1.37977 * 119.88478 * 179.79135 * 23 22 21 25 25 C 1.38447 * 120.11664 * 0.48847 * 24 23 22 26 26 Cl 1.73602 * 119.88840 * 179.76889 * 25 24 23 27 27 C 1.38446 * 120.22475 * 359.73884 * 25 24 23 28 28 C 1.37986 * 120.11125 * 0.02758 * 27 25 24 29 29 H 1.08999 * 109.47073 * 300.00305 * 1 2 3 30 30 H 1.09008 * 109.47081 * 59.99833 * 1 2 3 31 31 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46561 * 239.99819 * 2 1 3 33 33 H 1.09002 * 109.46682 * 120.00251 * 2 1 3 34 34 H 1.09001 * 109.46767 * 37.87183 * 4 3 2 35 35 H 1.08994 * 109.47075 * 157.86988 * 4 3 2 36 36 H 1.08996 * 109.47349 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47407 * 299.99714 * 5 4 3 38 38 H 1.09008 * 109.47203 * 59.99982 * 5 4 3 39 39 H 1.07996 * 126.06111 * 359.97438 * 9 8 6 40 40 H 1.09009 * 109.47148 * 244.72850 * 11 10 9 41 41 H 1.09003 * 109.46388 * 4.72425 * 11 10 9 42 42 H 0.96994 * 120.00454 * 180.02562 * 15 14 12 43 43 H 1.07998 * 120.05399 * 0.02562 * 23 22 21 44 44 H 1.08003 * 119.94234 * 180.20778 * 24 23 22 45 45 H 1.08000 * 119.94476 * 179.97438 * 27 25 24 46 46 H 1.08003 * 120.05701 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6377 1.6747 -1.8091 6 6 2.2430 2.0165 1.1672 7 8 2.1644 1.4065 2.2165 8 6 2.5836 3.4494 1.1720 9 6 3.2379 4.1469 0.1776 10 7 3.3517 5.4229 0.5757 11 6 3.9901 6.4933 -0.1942 12 6 3.0207 7.6338 -0.3683 13 1 2.0284 7.5682 0.0528 14 6 3.4006 8.7612 -1.0653 15 7 4.6092 8.8414 -1.5777 16 14 2.1992 10.1753 -1.2805 17 1 1.8020 10.6946 0.0527 18 1 2.8460 11.2597 -2.0622 19 1 0.9943 9.6953 -2.0040 20 7 2.7634 5.5774 1.8342 21 6 2.2890 4.4187 2.2317 22 6 1.5880 4.1436 3.5090 23 6 0.5494 3.2148 3.5509 24 6 -0.0967 2.9593 4.7430 25 6 0.2781 3.6309 5.8942 26 17 -0.5429 3.3092 7.3896 27 6 1.3058 4.5578 5.8569 28 6 1.9616 4.8171 4.6708 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.4941 1.7910 -1.9890 35 1 2.2330 3.1494 -1.1074 36 1 3.8193 2.1881 -2.7532 37 1 4.4062 1.9555 -1.0888 38 1 3.6673 0.5970 -1.9705 39 1 3.5973 3.7376 -0.7549 40 1 4.8742 6.8457 0.3374 41 1 4.2824 6.1122 -1.1727 42 1 4.8766 9.6346 -2.0677 43 1 0.2536 2.6933 2.6527 44 1 -0.8993 2.2374 4.7772 45 1 1.5942 5.0795 6.7576 46 1 2.7629 5.5406 4.6427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004516912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:49 Heat of formation + Delta-G solvation = 47.896884 kcal Electronic energy + Delta-G solvation = -29981.113433 eV Core-core repulsion = 25897.848975 eV Total energy + Delta-G solvation = -4083.264459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.32703 -40.37203 -40.08428 -37.51396 -37.12518 -35.72505 -33.96672 -33.50537 -32.15604 -31.67533 -31.06022 -30.32672 -28.72105 -25.53578 -25.04949 -24.46970 -23.89615 -23.45900 -22.25808 -21.22368 -20.07322 -18.73344 -18.33860 -17.86938 -17.57637 -17.01515 -16.69486 -16.61299 -16.23328 -15.79681 -15.69248 -15.34093 -14.86714 -14.76543 -14.61163 -14.51120 -14.35997 -14.21943 -13.78709 -13.72101 -13.60146 -13.33365 -13.04977 -12.91368 -12.79129 -12.70087 -12.60130 -12.52912 -12.50847 -12.29249 -12.05917 -11.90448 -11.84696 -11.76493 -11.61485 -10.85219 -10.77469 -10.59751 -10.05113 -9.78178 -9.57899 -9.20744 -8.36339 -6.49419 -0.18652 0.31158 0.66974 1.08236 1.27312 1.38476 1.40628 1.47890 1.60086 2.07007 2.30068 2.33542 2.71743 2.97307 3.30123 3.53878 3.80458 3.86485 3.88846 4.05527 4.10298 4.25037 4.26829 4.31048 4.37282 4.47102 4.50121 4.55636 4.62215 4.64196 4.80179 4.82647 4.89196 4.94549 4.96074 5.02470 5.05189 5.09854 5.17113 5.31855 5.39126 5.43687 5.48740 5.56345 5.70330 5.72658 5.77546 6.00834 6.42197 6.57629 6.74966 7.20709 7.28054 8.71704 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.006782 B = 0.003683 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4127.544840 B = 7600.730046 C =10891.013311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.110 3.890 3 N -0.605 5.605 4 C 0.077 3.923 5 C -0.174 4.174 6 C 0.599 3.401 7 O -0.568 6.568 8 C -0.312 4.312 9 C 0.096 3.904 10 N -0.332 5.332 11 C 0.265 3.735 12 C -0.549 4.549 13 H 0.053 0.947 14 C 0.026 3.974 15 N -0.916 5.916 16 Si 0.965 3.035 17 H -0.277 1.277 18 H -0.274 1.274 19 H -0.268 1.268 20 N -0.299 5.299 21 C 0.125 3.875 22 C -0.019 4.019 23 C -0.060 4.060 24 C -0.110 4.110 25 C -0.031 4.031 26 Cl -0.061 7.061 27 C -0.111 4.111 28 C -0.090 4.090 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.219 0.781 40 H 0.027 0.973 41 H 0.068 0.932 42 H 0.273 0.727 43 H 0.124 0.876 44 H 0.155 0.845 45 H 0.158 0.842 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -16.813 2.990 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.011 4.011 3 N -0.338 5.338 4 C -0.045 4.045 5 C -0.232 4.232 6 C 0.389 3.611 7 O -0.448 6.448 8 C -0.327 4.327 9 C -0.054 4.054 10 N -0.109 5.109 11 C 0.147 3.853 12 C -0.588 4.588 13 H 0.071 0.929 14 C -0.175 4.175 15 N -0.554 5.554 16 Si 0.789 3.211 17 H -0.203 1.203 18 H -0.198 1.198 19 H -0.192 1.192 20 N -0.120 5.120 21 C -0.042 4.042 22 C -0.021 4.021 23 C -0.080 4.080 24 C -0.128 4.128 25 C -0.058 4.058 26 Cl -0.032 7.032 27 C -0.129 4.129 28 C -0.110 4.110 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.142 0.858 44 H 0.173 0.827 45 H 0.175 0.825 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.064 -15.666 3.706 17.580 hybrid contribution -0.206 0.328 -0.387 0.548 sum -7.270 -15.338 3.319 17.295 Atomic orbital electron populations 1.22097 0.95316 1.03040 1.01564 1.21536 0.94731 0.81098 1.03748 1.47882 1.65639 1.14773 1.05487 1.22235 0.99076 0.98363 0.84847 1.22258 0.95609 1.03533 1.01820 1.17158 0.75679 0.84522 0.83708 1.90728 1.54306 1.67493 1.32271 1.21205 1.18752 0.95377 0.97402 1.24035 0.97494 0.84413 0.99503 1.49044 1.40574 1.08566 1.12746 1.19541 0.92480 0.83466 0.89841 1.21294 0.99690 1.01866 1.35900 0.92891 1.25618 0.97117 1.00422 0.94362 1.69958 1.19193 1.30495 1.35788 0.85500 0.78945 0.78347 0.78293 1.20290 1.19844 1.19249 1.77356 1.15766 1.21652 0.97222 1.22042 0.97943 0.89880 0.94319 1.17949 0.96219 0.98265 0.89646 1.20986 0.93658 0.94975 0.98360 1.21076 1.01203 1.00337 0.90231 1.21060 0.96978 0.99762 0.87977 1.98357 1.77908 1.94785 1.32123 1.21113 0.95075 0.97923 0.98784 1.21240 0.99873 0.98545 0.91298 0.94537 0.91907 0.89731 0.87802 0.91254 0.88041 0.90046 0.89391 0.93466 0.90594 0.76480 0.95532 0.91427 0.91741 0.85795 0.82733 0.82480 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.24 71.98 0.74 -1.93 16 2 C 0.11 2.02 6.19 86.38 0.54 2.55 16 3 N -0.61 -14.22 2.48 -825.87 -2.05 -16.27 16 4 C 0.08 1.45 5.65 86.38 0.49 1.94 16 5 C -0.17 -2.70 9.23 71.98 0.66 -2.03 16 6 C 0.60 19.19 6.64 86.62 0.58 19.77 16 7 O -0.57 -20.78 14.17 -4.11 -0.06 -20.84 16 8 C -0.31 -11.21 5.84 -18.78 -0.11 -11.32 16 9 C 0.10 3.36 9.01 84.27 0.76 4.12 16 10 N -0.33 -14.35 3.62 -350.18 -1.27 -15.62 16 11 C 0.26 12.65 6.21 85.63 0.53 13.18 16 12 C -0.55 -29.18 9.21 25.60 0.24 -28.94 16 13 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 14 C 0.03 1.37 5.46 84.66 0.46 1.83 16 15 N -0.92 -49.25 13.29 21.45 0.28 -48.97 16 16 Si 0.96 41.87 29.54 68.60 2.03 43.89 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 N -0.30 -13.55 12.27 -44.53 -0.55 -14.09 16 21 C 0.13 5.04 6.93 44.07 0.31 5.34 16 22 C -0.02 -0.67 5.67 -20.05 -0.11 -0.78 16 23 C -0.06 -1.89 8.02 22.49 0.18 -1.71 16 24 C -0.11 -2.91 9.81 22.26 0.22 -2.69 16 25 C -0.03 -0.78 6.32 22.37 0.14 -0.64 16 26 Cl -0.06 -1.30 28.95 -2.72 -0.08 -1.38 16 27 C -0.11 -2.91 9.81 22.26 0.22 -2.70 16 28 C -0.09 -2.88 9.76 22.49 0.22 -2.66 16 29 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.27 7.90 -2.39 -0.02 1.25 16 33 H 0.07 1.51 7.34 -2.39 -0.02 1.49 16 34 H 0.10 1.42 8.13 -2.39 -0.02 1.41 16 35 H 0.08 1.89 4.03 -2.39 -0.01 1.88 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 0.88 7.42 -2.39 -0.02 0.87 16 38 H 0.08 0.97 7.98 -2.38 -0.02 0.95 16 39 H 0.22 5.85 4.25 -2.91 -0.01 5.84 16 40 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.07 3.06 8.05 -2.39 -0.02 3.04 16 42 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 43 H 0.12 3.98 6.52 -2.91 -0.02 3.96 16 44 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 45 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 46 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -65.42 398.26 5.37 -60.05 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.01 Total: 19.90 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 6.05 Total: -6.68 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -3.58 Total: -94.95 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.06 Total: -20.84 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -65.42 5.37 -60.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004516912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.948 kcal (2) G-P(sol) polarization free energy of solvation -65.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds