Wall clock time and date at job start Tue Mar 31 2020 05:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47229 * 2 1 4 4 C 1.46905 * 110.99640 * 193.95583 * 3 2 1 5 5 C 1.50696 * 109.47281 * 66.04519 * 4 3 2 6 6 H 1.07996 * 120.00206 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99793 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00057 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99821 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47005 * 90.00073 * 9 7 5 11 11 H 1.48507 * 109.46667 * 209.99654 * 9 7 5 12 12 H 1.48492 * 109.46946 * 329.99605 * 9 7 5 13 13 C 1.39829 * 111.00102 * 69.99855 * 3 2 1 14 14 C 1.38927 * 120.00935 * 63.93437 * 13 3 2 15 15 C 1.38026 * 119.99075 * 179.72524 * 14 13 3 16 16 C 1.38842 * 120.00617 * 0.56618 * 15 14 13 17 17 N 1.40376 * 119.99050 * 179.72699 * 16 15 14 18 18 C 1.34209 * 118.68778 * 89.82535 * 17 16 15 19 19 O 1.21227 * 119.41173 * 0.56141 * 18 17 16 20 20 C 1.50591 * 121.22688 * 180.48310 * 18 17 16 21 21 C 1.53232 * 109.21823 * 331.01182 * 20 18 17 22 22 C 1.53245 * 108.56750 * 55.58372 * 21 20 18 23 23 C 1.34146 * 118.70279 * 269.89124 * 17 16 15 24 24 O 1.21229 * 119.36206 * 359.47625 * 23 17 16 25 25 C 1.38803 * 120.02258 * 359.45416 * 16 15 14 26 26 C 1.38073 * 120.00614 * 0.24886 * 25 16 15 27 27 N 1.48022 * 120.00503 * 180.02562 * 26 25 16 28 28 O 1.21800 * 119.99993 * 359.97438 * 27 26 25 29 29 O 1.21798 * 120.00108 * 180.02562 * 27 26 25 30 30 H 1.08996 * 109.46615 * 300.00572 * 1 2 3 31 31 H 1.09004 * 109.46770 * 60.00062 * 1 2 3 32 32 H 1.08992 * 109.47379 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47262 * 239.99920 * 2 1 3 34 34 H 1.08996 * 109.46990 * 120.00165 * 2 1 3 35 35 H 1.09004 * 109.46734 * 186.04492 * 4 3 2 36 36 H 1.09002 * 109.47141 * 306.04336 * 4 3 2 37 37 H 0.97006 * 120.00043 * 180.02562 * 8 7 5 38 38 H 1.08001 * 120.00158 * 359.97438 * 14 13 3 39 39 H 1.08003 * 119.99883 * 180.29326 * 15 14 13 40 40 H 1.09004 * 109.51757 * 211.07236 * 20 18 17 41 41 H 1.09004 * 109.52400 * 90.95459 * 20 18 17 42 42 H 1.09001 * 109.62453 * 175.30768 * 21 20 18 43 43 H 1.08997 * 109.62266 * 295.86423 * 21 20 18 44 44 H 1.09007 * 109.52242 * 64.28825 * 22 21 20 45 45 H 1.08997 * 109.52577 * 184.41346 * 22 21 20 46 46 H 1.08003 * 119.99680 * 180.26952 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4501 1.4376 -0.3308 5 6 3.6536 0.9853 -1.7538 6 1 2.8053 0.6881 -2.3525 7 6 4.9229 0.9500 -2.2911 8 7 5.9559 1.3114 -1.5618 9 14 5.1752 0.3887 -4.0548 10 1 5.0920 1.5600 -4.9637 11 1 6.5116 -0.2456 -4.1859 12 1 4.1229 -0.5946 -4.4167 13 6 1.7658 2.0063 1.2267 14 6 2.3714 1.5329 2.3839 15 6 2.1249 2.1500 3.5936 16 6 1.2627 3.2364 3.6560 17 7 1.0078 3.8602 4.8874 18 6 1.7990 4.8736 5.2722 19 8 2.7029 5.2313 4.5479 20 6 1.5840 5.5763 6.5867 21 6 0.0990 5.5076 6.9583 22 6 -0.3338 4.0376 6.9691 23 6 -0.0160 3.4189 5.6334 24 8 -0.6984 2.5040 5.2247 25 6 0.6570 3.7095 2.5001 26 6 0.9078 3.0966 1.2886 27 7 0.2624 3.6016 0.0559 28 8 -0.4904 4.5575 0.1104 29 8 0.4833 3.0605 -1.0127 30 1 -0.3632 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8114 2.4599 -0.2192 36 1 4.0028 0.7814 0.3416 37 1 6.8489 1.2869 -1.9399 38 1 3.0381 0.6845 2.3362 39 1 2.5994 1.7850 4.4926 40 1 1.8891 6.6189 6.4965 41 1 2.1763 5.0892 7.3613 42 1 -0.0513 5.9407 7.9472 43 1 -0.4883 6.0566 6.2223 44 1 0.2036 3.5054 7.7541 45 1 -1.4060 3.9749 7.1548 46 1 -0.0102 4.5574 2.5484 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004684528.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:57 Heat of formation + Delta-G solvation = -17.090513 kcal Electronic energy + Delta-G solvation = -33568.154420 eV Core-core repulsion = 29041.362732 eV Total energy + Delta-G solvation = -4526.791688 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.43481 -41.51859 -39.56051 -39.17706 -37.03175 -35.99130 -35.73013 -34.60293 -32.69471 -31.82764 -30.61806 -29.30878 -29.23242 -26.67971 -25.77753 -24.36461 -23.79299 -23.17417 -22.58219 -22.01706 -20.50652 -19.68635 -18.48572 -18.03506 -17.69061 -17.14349 -16.97971 -16.87449 -16.58459 -15.96672 -15.64897 -15.15577 -15.08497 -14.96773 -14.78787 -14.65706 -14.35711 -14.08780 -13.43331 -13.35170 -13.24428 -12.87748 -12.71931 -12.32555 -12.23770 -12.16135 -11.98711 -11.78513 -11.37268 -11.09519 -10.88169 -10.80069 -10.73100 -10.67522 -10.56127 -10.54221 -10.46330 -10.37852 -10.26150 -10.06182 -9.50322 -9.37315 -8.87424 -8.50570 -7.66742 -6.08632 -4.10076 0.23680 0.84283 1.14707 1.77270 1.81200 2.13692 2.34823 3.21841 3.33397 3.39483 3.42920 3.59876 3.99523 4.00034 4.11823 4.12969 4.44590 4.52998 4.56502 4.67108 4.67822 4.76266 4.99255 5.04132 5.11894 5.13303 5.17829 5.28165 5.34544 5.39453 5.58540 5.65280 5.76427 5.89865 5.93086 6.02261 6.17498 6.31647 6.49368 6.57336 6.64714 6.92998 7.03878 7.04127 7.09400 7.39327 7.68439 7.79362 7.99245 8.34246 8.36254 8.96927 9.54174 11.02345 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.002951 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.868742 B = 9485.494644 C = 9986.025137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.065 3.935 3 N -0.500 5.500 4 C 0.202 3.798 5 C -0.505 4.505 6 H 0.072 0.928 7 C 0.057 3.943 8 N -0.899 5.899 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.272 1.272 13 C 0.204 3.796 14 C -0.145 4.145 15 C -0.040 4.040 16 C 0.091 3.909 17 N -0.522 5.522 18 C 0.515 3.485 19 O -0.479 6.479 20 C -0.138 4.138 21 C -0.126 4.126 22 C -0.138 4.138 23 C 0.518 3.482 24 O -0.485 6.485 25 C -0.033 4.033 26 C -0.028 4.028 27 N 0.029 4.971 28 O -0.224 6.224 29 O -0.065 6.065 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.027 0.973 35 H 0.031 0.969 36 H 0.001 0.999 37 H 0.262 0.738 38 H 0.153 0.847 39 H 0.137 0.863 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 5.126 22.653 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.061 4.061 3 N -0.223 5.223 4 C 0.080 3.920 5 C -0.544 4.544 6 H 0.090 0.910 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.196 1.196 13 C 0.107 3.893 14 C -0.167 4.167 15 C -0.060 4.060 16 C 0.003 3.997 17 N -0.264 5.264 18 C 0.305 3.695 19 O -0.349 6.349 20 C -0.178 4.178 21 C -0.164 4.164 22 C -0.178 4.178 23 C 0.308 3.692 24 O -0.356 6.356 25 C -0.054 4.054 26 C -0.113 4.113 27 N 0.552 4.448 28 O -0.420 6.420 29 O -0.303 6.303 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.018 0.982 37 H 0.072 0.928 38 H 0.170 0.830 39 H 0.155 0.845 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.800 5.009 22.378 25.347 hybrid contribution 0.678 -0.427 -0.507 0.948 sum -10.122 4.582 21.871 24.531 Atomic orbital electron populations 1.21851 0.96167 1.00913 1.01846 1.22108 0.94468 0.87370 1.02159 1.60277 1.23324 1.17272 1.21381 1.19879 0.77445 0.97437 0.97280 1.21067 0.92949 1.43854 0.96486 0.90987 1.24982 0.95804 0.95448 0.98252 1.69959 0.98996 1.48161 1.36699 0.86416 0.77246 0.78937 0.84371 1.20472 1.21434 1.19639 1.19109 0.88166 0.90129 0.91919 1.21813 1.01442 1.02120 0.91278 1.21312 0.93512 0.92328 0.98860 1.17032 1.01675 0.96852 0.84184 1.44457 1.30553 1.32991 1.18381 1.21297 0.80751 0.78471 0.89003 1.90843 1.29030 1.61460 1.53527 1.21966 0.98916 1.03332 0.93547 1.21776 0.94521 0.95437 1.04674 1.21965 1.05724 0.96789 0.93282 1.21252 0.78384 0.82824 0.86755 1.90804 1.46632 1.27125 1.71016 1.20685 0.96998 0.98362 0.89320 1.20906 1.04200 1.00896 0.85297 1.43228 0.99307 0.99718 1.02525 1.94464 1.34540 1.19855 1.93171 1.94692 1.63253 1.57429 1.14971 0.94643 0.91152 0.92568 0.87898 0.95491 0.95107 0.98159 0.92799 0.82983 0.84549 0.86440 0.86817 0.88273 0.90038 0.86833 0.86494 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.95 37.16 0.37 -2.12 16 2 C 0.06 1.21 5.44 -3.82 -0.02 1.19 16 3 N -0.50 -10.71 2.32 -172.42 -0.40 -11.12 16 4 C 0.20 5.10 4.30 -4.97 -0.02 5.08 16 5 C -0.51 -13.81 8.31 -34.44 -0.29 -14.09 16 6 H 0.07 1.95 7.23 -52.49 -0.38 1.57 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.20 3.94 3.73 -83.72 -0.31 3.63 16 14 C -0.15 -2.40 8.52 -39.40 -0.34 -2.74 16 15 C -0.04 -0.58 9.96 -39.44 -0.39 -0.97 16 16 C 0.09 1.35 3.47 -83.51 -0.29 1.06 16 17 N -0.52 -5.88 2.58 -59.75 -0.15 -6.03 16 18 C 0.51 5.25 7.45 -11.29 -0.08 5.17 16 19 O -0.48 -7.14 16.91 5.60 0.09 -7.04 16 20 C -0.14 -0.59 6.07 -27.82 -0.17 -0.76 16 21 C -0.13 -0.31 6.09 -26.48 -0.16 -0.47 16 22 C -0.14 -0.54 6.07 -27.81 -0.17 -0.71 16 23 C 0.52 4.99 7.45 -11.32 -0.08 4.90 16 24 O -0.49 -6.64 16.91 5.60 0.09 -6.54 16 25 C -0.03 -0.55 9.47 -39.43 -0.37 -0.92 16 26 C -0.03 -0.53 6.87 -79.77 -0.55 -1.08 16 27 N 0.03 0.62 4.45 34.05 0.15 0.77 16 28 O -0.22 -4.60 18.45 -29.46 -0.54 -5.14 16 29 O -0.06 -1.47 16.95 -29.46 -0.50 -1.97 16 30 H 0.03 0.59 7.52 -51.93 -0.39 0.20 16 31 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 2.06 6.60 -51.93 -0.34 1.71 16 34 H 0.03 0.47 7.07 -51.93 -0.37 0.10 16 35 H 0.03 0.87 8.06 -51.93 -0.42 0.45 16 36 H 0.00 0.02 7.47 -51.93 -0.39 -0.37 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 38 H 0.15 2.37 7.13 -52.49 -0.37 2.00 16 39 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.11 0.20 8.14 -51.92 -0.42 -0.22 16 45 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.15 2.28 7.61 -52.48 -0.40 1.88 16 LS Contribution 391.38 15.07 5.90 5.90 Total: -1.00 -35.80 391.38 -8.61 -44.41 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.99 Total: -2.86 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.98 Total: -1.37 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.33 Total: -41.91 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.85 Total: -20.70 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.80 -8.61 -44.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004684528.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.320 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds