Wall clock time and date at job start Tue Mar 31 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47229 * 2 1 4 4 C 1.46905 * 110.99640 * 193.95583 * 3 2 1 5 5 C 1.50696 * 109.47281 * 66.04519 * 4 3 2 6 6 H 1.07996 * 120.00206 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99793 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00057 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99821 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47005 * 90.00073 * 9 7 5 11 11 H 1.48507 * 109.46667 * 209.99654 * 9 7 5 12 12 H 1.48492 * 109.46946 * 329.99605 * 9 7 5 13 13 C 1.39829 * 111.00102 * 69.99855 * 3 2 1 14 14 C 1.38927 * 120.00935 * 63.93437 * 13 3 2 15 15 C 1.38026 * 119.99075 * 179.72524 * 14 13 3 16 16 C 1.38842 * 120.00617 * 0.56618 * 15 14 13 17 17 N 1.40376 * 119.99050 * 179.72699 * 16 15 14 18 18 C 1.34209 * 118.68778 * 89.82535 * 17 16 15 19 19 O 1.21227 * 119.41173 * 0.56141 * 18 17 16 20 20 C 1.50591 * 121.22688 * 180.48310 * 18 17 16 21 21 C 1.53232 * 109.21823 * 331.01182 * 20 18 17 22 22 C 1.53245 * 108.56750 * 55.58372 * 21 20 18 23 23 C 1.34146 * 118.70279 * 269.89124 * 17 16 15 24 24 O 1.21229 * 119.36206 * 359.47625 * 23 17 16 25 25 C 1.38803 * 120.02258 * 359.45416 * 16 15 14 26 26 C 1.38073 * 120.00614 * 0.24886 * 25 16 15 27 27 N 1.48022 * 120.00503 * 180.02562 * 26 25 16 28 28 O 1.21800 * 119.99993 * 359.97438 * 27 26 25 29 29 O 1.21798 * 120.00108 * 180.02562 * 27 26 25 30 30 H 1.08996 * 109.46615 * 300.00572 * 1 2 3 31 31 H 1.09004 * 109.46770 * 60.00062 * 1 2 3 32 32 H 1.08992 * 109.47379 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47262 * 239.99920 * 2 1 3 34 34 H 1.08996 * 109.46990 * 120.00165 * 2 1 3 35 35 H 1.09004 * 109.46734 * 186.04492 * 4 3 2 36 36 H 1.09002 * 109.47141 * 306.04336 * 4 3 2 37 37 H 0.97006 * 120.00043 * 180.02562 * 8 7 5 38 38 H 1.08001 * 120.00158 * 359.97438 * 14 13 3 39 39 H 1.08003 * 119.99883 * 180.29326 * 15 14 13 40 40 H 1.09004 * 109.51757 * 211.07236 * 20 18 17 41 41 H 1.09004 * 109.52400 * 90.95459 * 20 18 17 42 42 H 1.09001 * 109.62453 * 175.30768 * 21 20 18 43 43 H 1.08997 * 109.62266 * 295.86423 * 21 20 18 44 44 H 1.09007 * 109.52242 * 64.28825 * 22 21 20 45 45 H 1.08997 * 109.52577 * 184.41346 * 22 21 20 46 46 H 1.08003 * 119.99680 * 180.26952 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4501 1.4376 -0.3308 5 6 3.6536 0.9853 -1.7538 6 1 2.8053 0.6881 -2.3525 7 6 4.9229 0.9500 -2.2911 8 7 5.9559 1.3114 -1.5618 9 14 5.1752 0.3887 -4.0548 10 1 5.0920 1.5600 -4.9637 11 1 6.5116 -0.2456 -4.1859 12 1 4.1229 -0.5946 -4.4167 13 6 1.7658 2.0063 1.2267 14 6 2.3714 1.5329 2.3839 15 6 2.1249 2.1500 3.5936 16 6 1.2627 3.2364 3.6560 17 7 1.0078 3.8602 4.8874 18 6 1.7990 4.8736 5.2722 19 8 2.7029 5.2313 4.5479 20 6 1.5840 5.5763 6.5867 21 6 0.0990 5.5076 6.9583 22 6 -0.3338 4.0376 6.9691 23 6 -0.0160 3.4189 5.6334 24 8 -0.6984 2.5040 5.2247 25 6 0.6570 3.7095 2.5001 26 6 0.9078 3.0966 1.2886 27 7 0.2624 3.6016 0.0559 28 8 -0.4904 4.5575 0.1104 29 8 0.4833 3.0605 -1.0127 30 1 -0.3632 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8114 2.4599 -0.2192 36 1 4.0028 0.7814 0.3416 37 1 6.8489 1.2869 -1.9399 38 1 3.0381 0.6845 2.3362 39 1 2.5994 1.7850 4.4926 40 1 1.8891 6.6189 6.4965 41 1 2.1763 5.0892 7.3613 42 1 -0.0513 5.9407 7.9472 43 1 -0.4883 6.0566 6.2223 44 1 0.2036 3.5054 7.7541 45 1 -1.4060 3.9749 7.1548 46 1 -0.0102 4.5574 2.5484 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004684528.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:56 Heat of formation + Delta-G solvation = -39.011089 kcal Electronic energy + Delta-G solvation = -33569.104968 eV Core-core repulsion = 29041.362732 eV Total energy + Delta-G solvation = -4527.742236 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.44620 -42.98315 -40.98041 -40.05398 -38.42987 -37.38677 -36.70529 -35.53884 -34.71864 -33.20603 -32.05436 -30.79712 -29.75239 -28.45059 -27.30979 -25.39828 -24.54252 -24.43883 -24.29442 -23.30469 -21.99996 -20.86331 -19.78233 -19.11649 -18.72210 -18.53246 -18.37640 -18.25983 -17.78872 -17.64087 -16.88377 -16.65508 -15.97136 -15.91100 -15.82069 -15.71490 -15.52954 -15.17517 -14.86475 -14.66883 -14.30051 -14.05889 -13.90276 -13.80556 -13.48802 -13.32829 -12.95071 -12.84903 -12.68041 -12.56747 -12.48735 -12.28018 -12.25353 -12.10783 -12.04051 -11.99731 -11.97698 -11.44498 -11.40133 -11.34197 -11.31645 -10.85188 -10.65345 -10.27491 -9.36431 -8.24190 -6.33022 -1.27108 -0.48489 0.23535 0.37527 0.39992 1.22781 1.41226 1.44125 1.54360 1.59072 1.90201 2.37405 2.66059 3.03983 3.09938 3.21350 3.39905 3.46365 3.58632 3.68442 3.75668 3.76992 3.89837 4.02791 4.15542 4.30103 4.33315 4.39531 4.53253 4.59215 4.62834 4.65435 4.74195 4.80851 4.88425 4.90887 4.97001 5.00792 5.07918 5.16081 5.21486 5.27560 5.33402 5.63295 5.75282 5.94894 6.02618 6.31265 6.43755 6.59362 6.66218 6.79965 7.35757 8.87173 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.002951 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.868742 B = 9485.494644 C = 9986.025137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.064 3.936 3 N -0.509 5.509 4 C 0.223 3.777 5 C -0.518 4.518 6 H 0.069 0.931 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.969 3.031 10 H -0.279 1.279 11 H -0.280 1.280 12 H -0.260 1.260 13 C 0.177 3.823 14 C -0.147 4.147 15 C -0.029 4.029 16 C 0.098 3.902 17 N -0.526 5.526 18 C 0.514 3.486 19 O -0.537 6.537 20 C -0.128 4.128 21 C -0.118 4.118 22 C -0.127 4.127 23 C 0.516 3.484 24 O -0.532 6.532 25 C -0.039 4.039 26 C -0.044 4.044 27 N 0.033 4.967 28 O -0.206 6.206 29 O -0.121 6.121 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.043 0.957 35 H -0.011 1.011 36 H -0.010 1.010 37 H 0.265 0.735 38 H 0.160 0.840 39 H 0.173 0.827 40 H 0.128 0.872 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.073 0.927 44 H 0.147 0.853 45 H 0.131 0.869 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.024 5.361 26.313 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.061 4.061 3 N -0.231 5.231 4 C 0.100 3.900 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.192 4.192 8 N -0.574 5.574 9 Si 0.794 3.206 10 H -0.205 1.205 11 H -0.206 1.206 12 H -0.184 1.184 13 C 0.080 3.920 14 C -0.168 4.168 15 C -0.049 4.049 16 C 0.008 3.992 17 N -0.268 5.268 18 C 0.308 3.692 19 O -0.410 6.410 20 C -0.167 4.167 21 C -0.155 4.155 22 C -0.166 4.166 23 C 0.310 3.690 24 O -0.406 6.406 25 C -0.060 4.060 26 C -0.130 4.130 27 N 0.551 4.449 28 O -0.410 6.410 29 O -0.346 6.346 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.008 0.992 36 H 0.007 0.993 37 H 0.074 0.926 38 H 0.177 0.823 39 H 0.190 0.810 40 H 0.146 0.854 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.092 0.908 44 H 0.165 0.835 45 H 0.149 0.851 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.735 5.183 26.002 28.995 hybrid contribution 0.891 -0.389 -1.416 1.718 sum -10.844 4.794 24.586 27.296 Atomic orbital electron populations 1.21730 0.94335 1.02525 1.00801 1.22146 0.95874 0.86089 1.02035 1.60024 1.20639 1.18907 1.23547 1.19401 0.79893 0.94351 0.96391 1.21348 0.93053 1.43683 0.97493 0.91329 1.25850 0.95478 0.95417 1.02483 1.70074 0.99448 1.49231 1.38604 0.85380 0.77649 0.78571 0.79035 1.20536 1.20565 1.18404 1.19170 0.89889 0.90929 0.91979 1.21899 1.01197 1.02473 0.91204 1.21696 0.92499 0.91463 0.99225 1.17303 0.99987 0.96307 0.85559 1.44910 1.31569 1.33327 1.16987 1.22608 0.79067 0.77244 0.90322 1.90832 1.31528 1.62957 1.55668 1.22163 1.00984 1.03237 0.90279 1.21839 0.92587 0.94353 1.06719 1.22162 1.07118 0.97523 0.89796 1.22529 0.76596 0.81932 0.87936 1.90795 1.47972 1.29469 1.72329 1.20893 0.97439 0.98535 0.89099 1.21054 1.05249 1.01644 0.85020 1.43500 0.98981 0.99394 1.03043 1.94408 1.33864 1.19457 1.93279 1.94695 1.65118 1.58683 1.16139 0.95064 0.92751 0.89467 0.89521 0.93923 0.99245 0.99283 0.92615 0.82264 0.80988 0.85382 0.83522 0.84073 0.90837 0.83517 0.85068 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 9.95 71.98 0.72 -3.89 16 2 C 0.06 2.48 5.44 86.30 0.47 2.95 16 3 N -0.51 -23.06 2.32 -699.42 -1.62 -24.68 16 4 C 0.22 11.98 4.30 85.55 0.37 12.35 16 5 C -0.52 -29.53 8.31 25.60 0.21 -29.31 16 6 H 0.07 3.88 7.23 -2.91 -0.02 3.85 16 7 C 0.01 0.34 5.46 84.66 0.46 0.81 16 8 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 9 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 13 C 0.18 7.17 3.73 38.18 0.14 7.31 16 14 C -0.15 -4.95 8.52 22.38 0.19 -4.76 16 15 C -0.03 -0.82 9.96 22.36 0.22 -0.60 16 16 C 0.10 2.85 3.47 38.05 0.13 2.99 16 17 N -0.53 -10.89 2.58 -580.44 -1.50 -12.39 16 18 C 0.51 9.40 7.45 87.71 0.65 10.05 16 19 O -0.54 -15.74 16.91 -2.87 -0.05 -15.78 16 20 C -0.13 -0.53 6.07 29.89 0.18 -0.35 16 21 C -0.12 0.04 6.09 30.75 0.19 0.23 16 22 C -0.13 -0.38 6.07 29.90 0.18 -0.20 16 23 C 0.52 8.61 7.45 87.72 0.65 9.26 16 24 O -0.53 -13.78 16.91 -2.87 -0.05 -13.83 16 25 C -0.04 -1.32 9.47 22.37 0.21 -1.11 16 26 C -0.04 -1.78 6.87 36.49 0.25 -1.53 16 27 N 0.03 1.45 4.45 -46.19 -0.21 1.24 16 28 O -0.21 -8.72 18.45 18.89 0.35 -8.37 16 29 O -0.12 -5.85 16.95 18.89 0.32 -5.53 16 30 H 0.03 1.06 7.52 -2.39 -0.02 1.04 16 31 H 0.05 2.00 8.00 -2.38 -0.02 1.98 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.09 3.61 6.60 -2.38 -0.02 3.60 16 34 H 0.04 1.50 7.07 -2.39 -0.02 1.48 16 35 H -0.01 -0.64 8.06 -2.38 -0.02 -0.66 16 36 H -0.01 -0.57 7.47 -2.39 -0.02 -0.59 16 37 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 38 H 0.16 5.05 7.13 -2.91 -0.02 5.03 16 39 H 0.17 3.54 8.06 -2.91 -0.02 3.51 16 40 H 0.13 0.38 8.14 -2.38 -0.02 0.36 16 41 H 0.15 -0.24 8.14 -2.38 -0.02 -0.25 16 42 H 0.14 -1.03 8.14 -2.39 -0.02 -1.05 16 43 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.15 -0.40 8.14 -2.38 -0.02 -0.42 16 45 H 0.13 0.15 8.14 -2.39 -0.02 0.14 16 46 H 0.16 4.89 7.61 -2.91 -0.02 4.87 16 Total: -1.00 -85.10 391.38 5.81 -79.29 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.02 Total: 4.70 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 5.24 Total: 4.20 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -3.04 Total: -91.78 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: 0.57 Total: -43.51 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -85.10 5.81 -79.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004684528.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.276 kcal (2) G-P(sol) polarization free energy of solvation -85.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds