Wall clock time and date at job start Tue Mar 31 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34437 * 125.36315 * 2 1 4 4 C 1.46788 * 106.50554 * 180.02562 * 3 2 1 5 5 C 1.46290 * 127.05621 * 180.02562 * 4 3 2 6 6 N 1.31031 * 120.00640 * 179.97438 * 5 4 3 7 7 N 1.40089 * 120.00472 * 180.02562 * 6 5 4 8 8 C 1.34779 * 120.00133 * 179.97438 * 7 6 5 9 9 O 1.22075 * 119.99818 * 359.97438 * 8 7 6 10 10 C 1.40011 * 120.00388 * 179.97438 * 8 7 6 11 11 H 1.08004 * 120.00012 * 0.02562 * 10 8 7 12 12 C 1.40092 * 120.00681 * 180.02562 * 10 8 7 13 13 N 1.30672 * 119.99439 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00740 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46536 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47237 * 119.99756 * 14 12 10 17 17 H 1.48502 * 109.46778 * 240.00177 * 14 12 10 18 18 C 1.39181 * 105.88978 * 359.77296 * 4 3 2 19 19 C 1.50703 * 125.99994 * 180.26534 * 18 4 3 20 20 N 1.34787 * 108.00531 * 0.36963 * 18 4 3 21 21 C 1.39658 * 124.84022 * 179.87437 * 20 18 4 22 22 C 1.37912 * 120.29991 * 269.73075 * 21 20 18 23 23 C 1.39107 * 120.74859 * 180.02562 * 22 21 20 24 24 C 1.36225 * 121.08494 * 0.02562 * 23 22 21 25 25 C 1.40522 * 119.95606 * 359.97438 * 24 23 22 26 26 C 1.40566 * 121.19502 * 179.97438 * 25 24 23 27 27 C 1.36136 * 119.66059 * 180.02562 * 26 25 24 28 28 C 1.39327 * 120.96921 * 0.02562 * 27 26 25 29 29 C 1.36188 * 120.95804 * 359.94175 * 28 27 26 30 30 C 1.40342 * 119.67478 * 0.08589 * 29 28 27 31 31 H 1.09003 * 109.47298 * 269.97640 * 1 2 3 32 32 H 1.08999 * 109.47077 * 29.97525 * 1 2 3 33 33 H 1.09000 * 109.46844 * 149.97589 * 1 2 3 34 34 H 1.07995 * 126.74735 * 359.97438 * 3 2 1 35 35 H 1.08004 * 120.00098 * 359.97438 * 5 4 3 36 36 H 0.96998 * 120.00113 * 359.97438 * 7 6 5 37 37 H 0.97008 * 119.99649 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.47118 * 270.12565 * 19 18 4 39 39 H 1.09000 * 109.47314 * 30.12886 * 19 18 4 40 40 H 1.09003 * 109.47325 * 150.12494 * 19 18 4 41 41 H 1.07999 * 119.62374 * 0.03395 * 22 21 20 42 42 H 1.08001 * 119.46306 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.02410 * 179.70490 * 24 23 22 44 44 H 1.07999 * 120.17589 * 359.97438 * 26 25 24 45 45 H 1.07993 * 119.51301 * 179.97438 * 27 26 25 46 46 H 1.08001 * 119.52047 * 180.02562 * 28 27 26 47 47 H 1.08011 * 120.16407 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2851 1.0963 0.0000 4 6 3.6741 0.6219 -0.0006 5 6 4.8857 1.4418 -0.0003 6 7 6.0643 0.8693 -0.0005 7 7 7.2245 1.6544 0.0003 8 6 8.4368 1.0655 0.0007 9 8 8.5238 -0.1522 0.0008 10 6 9.5964 1.8501 0.0010 11 1 9.5195 2.9274 0.0013 12 6 10.8565 1.2380 0.0008 13 7 10.9496 -0.0654 0.0009 14 14 12.4036 2.2849 0.0019 15 1 12.0288 3.7218 0.0023 16 1 13.2056 1.9817 1.2144 17 1 13.2061 1.9833 -1.2107 18 6 3.6021 -0.7680 0.0043 19 6 4.7738 -1.7158 0.0114 20 7 2.3004 -1.1178 -0.0006 21 6 1.8273 -2.4318 -0.0003 22 6 1.5913 -3.0866 -1.1909 23 6 1.1196 -4.3952 -1.2016 24 6 0.8775 -5.0650 -0.0404 25 6 1.1049 -4.4338 1.1943 26 6 0.8634 -5.1002 2.4082 27 6 1.0940 -4.4586 3.5865 28 6 1.5665 -3.1481 3.6087 29 6 1.8120 -2.4722 2.4522 30 6 1.5853 -3.1012 1.2183 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.9533 2.1241 -0.0004 35 1 4.8088 2.5191 0.0000 36 1 7.1554 2.6219 0.0006 37 1 11.8222 -0.4893 0.0005 38 1 5.0608 -1.9463 -1.0146 39 1 5.6137 -1.2513 0.5280 40 1 4.4944 -2.6352 0.5259 41 1 1.7750 -2.5776 -2.1256 42 1 0.9416 -4.8880 -2.1460 43 1 0.5068 -6.0790 -0.0686 44 1 0.4960 -6.1158 2.4061 45 1 0.9073 -4.9728 4.5176 46 1 1.7418 -2.6616 4.5569 47 1 2.1778 -1.4564 2.4844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004739227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:27 Heat of formation + Delta-G solvation = 97.566651 kcal Electronic energy + Delta-G solvation = -30783.296895 eV Core-core repulsion = 26704.619129 eV Total energy + Delta-G solvation = -4078.677766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.68976 -39.99319 -37.43030 -36.73840 -35.13028 -33.71286 -32.67175 -32.30544 -31.23701 -30.63887 -29.91685 -28.86844 -28.26675 -26.57459 -24.24254 -23.86821 -23.28195 -22.74858 -21.48940 -19.87945 -19.83346 -18.60097 -17.81275 -17.28048 -16.93599 -16.70088 -15.97328 -15.50635 -15.43269 -15.10160 -14.34312 -14.25821 -14.20389 -13.94746 -13.70357 -13.47426 -13.21701 -13.13159 -13.03760 -12.84643 -12.79691 -12.57828 -12.32449 -12.07204 -11.85511 -11.76862 -11.59723 -11.40686 -11.34552 -11.28421 -11.16711 -11.09788 -10.75713 -10.56303 -10.27792 -10.18850 -9.14561 -8.99941 -8.93896 -8.56900 -8.16263 -7.88300 -7.63550 -6.80268 -6.31816 -4.86761 0.13477 0.70186 1.67729 2.05931 2.50414 2.66749 2.90026 3.07279 3.15082 3.20121 3.76987 3.81208 3.90542 4.23330 4.36274 4.51741 4.53239 4.54869 4.72026 4.80193 4.82907 5.03731 5.09260 5.11473 5.20118 5.31723 5.39047 5.42090 5.49717 5.62154 5.71285 5.75951 5.81056 5.84797 5.89303 5.91566 5.92854 6.06044 6.10833 6.18843 6.24167 6.25588 6.32454 6.44120 6.58988 6.66792 6.79013 6.95550 7.22124 7.27896 7.42202 7.66683 7.98766 8.10897 8.84049 8.93497 9.46698 10.46918 10.78782 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.002215 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.871590 B =12637.480853 C =13403.700657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.006 3.994 3 C -0.163 4.163 4 C -0.123 4.123 5 C 0.068 3.932 6 N -0.210 5.210 7 N -0.597 5.597 8 C 0.562 3.438 9 O -0.558 6.558 10 C -0.537 4.537 11 H 0.069 0.931 12 C 0.088 3.912 13 N -0.745 5.745 14 Si 0.914 3.086 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.077 3.923 19 C -0.086 4.086 20 N -0.402 5.402 21 C 0.130 3.870 22 C -0.098 4.098 23 C -0.110 4.110 24 C -0.096 4.096 25 C -0.047 4.047 26 C -0.108 4.108 27 C -0.111 4.111 28 C -0.112 4.112 29 C -0.096 4.096 30 C -0.042 4.042 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.365 0.635 37 H 0.272 0.728 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.050 0.950 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.641 -6.775 2.302 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 C -0.189 4.189 4 C -0.132 4.132 5 C -0.141 4.141 6 N -0.019 5.019 7 N -0.342 5.342 8 C 0.370 3.630 9 O -0.439 6.439 10 C -0.574 4.574 11 H 0.087 0.913 12 C -0.135 4.135 13 N -0.372 5.372 14 Si 0.738 3.262 15 H -0.186 1.186 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.038 4.038 19 C -0.143 4.143 20 N -0.079 5.079 21 C 0.041 3.959 22 C -0.117 4.117 23 C -0.129 4.129 24 C -0.114 4.114 25 C -0.047 4.047 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.130 4.130 29 C -0.114 4.114 30 C -0.043 4.043 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.161 0.839 35 H 0.119 0.881 36 H 0.200 0.800 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.069 0.931 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -23.868 -8.887 2.298 25.572 hybrid contribution 0.470 1.994 -0.044 2.049 sum -23.398 -6.894 2.254 24.496 Atomic orbital electron populations 1.20250 0.88537 1.02697 1.02196 1.20158 0.92988 0.84816 1.11975 1.21617 0.90828 0.96986 1.09510 1.18952 0.90943 0.89916 1.13339 1.23161 0.89676 0.95956 1.05339 1.74969 0.93775 1.25708 1.07468 1.47928 1.02892 1.06356 1.77019 1.16523 0.79596 0.88651 0.78227 1.90730 1.84856 1.14099 1.54169 1.19633 0.90085 0.94373 1.53329 0.91264 1.25745 1.00368 0.94897 0.92470 1.70074 1.25228 1.09724 1.32201 0.86204 0.80826 0.80708 0.78412 1.18563 1.19909 1.19914 1.21207 0.83253 0.94455 1.04837 1.20499 0.94676 0.96001 1.03136 1.40658 1.05402 1.02669 1.59129 1.17537 1.01166 0.84398 0.92846 1.21326 0.97992 0.95022 0.97339 1.20726 0.99449 0.93916 0.98804 1.21132 0.99022 0.99862 0.91383 1.17974 0.99775 0.92766 0.94219 1.21016 1.00410 0.99761 0.91437 1.20912 0.98821 0.94940 0.98251 1.20926 0.98837 0.94803 0.98473 1.21064 0.98553 1.00424 0.91382 1.18088 0.99781 0.93578 0.92900 0.91569 0.90369 0.92248 0.83947 0.88070 0.79975 0.91721 0.91079 0.87030 0.93128 0.85117 0.85075 0.85049 0.85276 0.85744 0.85662 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.03 36.01 0.36 -0.40 16 2 C 0.01 0.08 6.82 -81.59 -0.56 -0.48 16 3 C -0.16 -2.28 10.99 -37.47 -0.41 -2.69 16 4 C -0.12 -2.13 6.34 -102.86 -0.65 -2.78 16 5 C 0.07 1.29 11.05 -14.66 -0.16 1.13 16 6 N -0.21 -4.90 8.64 32.08 0.28 -4.62 16 7 N -0.60 -14.82 6.26 28.79 0.18 -14.64 16 8 C 0.56 16.69 7.63 -15.59 -0.12 16.57 16 9 O -0.56 -18.82 15.18 4.85 0.07 -18.75 16 10 C -0.54 -15.22 9.22 -38.22 -0.35 -15.57 16 11 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 12 C 0.09 2.44 5.49 -17.35 -0.10 2.35 16 13 N -0.74 -22.14 11.69 55.55 0.65 -21.49 16 14 Si 0.91 19.76 29.56 -169.99 -5.02 14.74 16 15 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 18 C 0.08 1.31 6.95 -80.94 -0.56 0.75 16 19 C -0.09 -1.59 9.48 36.01 0.34 -1.25 16 20 N -0.40 -5.76 1.85 -51.64 -0.10 -5.85 16 21 C 0.13 1.67 4.21 -83.32 -0.35 1.32 16 22 C -0.10 -1.08 9.92 -39.38 -0.39 -1.47 16 23 C -0.11 -0.97 9.94 -39.98 -0.40 -1.37 16 24 C -0.10 -0.83 9.75 -39.45 -0.38 -1.21 16 25 C -0.05 -0.49 5.74 -106.85 -0.61 -1.10 16 26 C -0.11 -0.95 9.77 -39.46 -0.39 -1.33 16 27 C -0.11 -0.97 9.95 -39.93 -0.40 -1.37 16 28 C -0.11 -1.15 9.95 -39.91 -0.40 -1.54 16 29 C -0.10 -1.18 9.54 -39.53 -0.38 -1.56 16 30 C -0.04 -0.52 5.75 -106.70 -0.61 -1.14 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.56 7.76 -51.93 -0.40 0.16 16 34 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.10 1.65 8.04 -52.48 -0.42 1.23 16 36 H 0.37 7.76 8.62 -182.61 -1.57 6.19 16 37 H 0.27 7.22 8.29 -40.82 -0.34 6.89 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.11 2.47 6.35 -51.93 -0.33 2.14 16 40 H 0.05 0.86 7.76 -51.93 -0.40 0.46 16 41 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.13 1.74 7.54 -52.48 -0.40 1.35 16 LS Contribution 406.06 15.07 6.12 6.12 Total: -1.00 -36.56 406.06 -11.64 -48.20 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -7.30 Total: 9.44 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -6.52 Total: -13.15 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 1.01 Total: -46.60 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.07 Total: -18.75 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.56 -11.64 -48.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004739227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.768 kcal (2) G-P(sol) polarization free energy of solvation -36.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds