Wall clock time and date at job start Tue Mar 31 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34437 * 125.36315 * 2 1 4 4 C 1.46788 * 106.50554 * 180.02562 * 3 2 1 5 5 C 1.46290 * 127.05621 * 180.02562 * 4 3 2 6 6 N 1.31031 * 120.00640 * 179.97438 * 5 4 3 7 7 N 1.40089 * 120.00472 * 180.02562 * 6 5 4 8 8 C 1.34779 * 120.00133 * 179.97438 * 7 6 5 9 9 O 1.22075 * 119.99818 * 359.97438 * 8 7 6 10 10 C 1.40011 * 120.00388 * 179.97438 * 8 7 6 11 11 H 1.08004 * 120.00012 * 0.02562 * 10 8 7 12 12 C 1.40092 * 120.00681 * 180.02562 * 10 8 7 13 13 N 1.30672 * 119.99439 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00740 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46536 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47237 * 119.99756 * 14 12 10 17 17 H 1.48502 * 109.46778 * 240.00177 * 14 12 10 18 18 C 1.39181 * 105.88978 * 359.77296 * 4 3 2 19 19 C 1.50703 * 125.99994 * 180.26534 * 18 4 3 20 20 N 1.34787 * 108.00531 * 0.36963 * 18 4 3 21 21 C 1.39658 * 124.84022 * 179.87437 * 20 18 4 22 22 C 1.37912 * 120.29991 * 269.73075 * 21 20 18 23 23 C 1.39107 * 120.74859 * 180.02562 * 22 21 20 24 24 C 1.36225 * 121.08494 * 0.02562 * 23 22 21 25 25 C 1.40522 * 119.95606 * 359.97438 * 24 23 22 26 26 C 1.40566 * 121.19502 * 179.97438 * 25 24 23 27 27 C 1.36136 * 119.66059 * 180.02562 * 26 25 24 28 28 C 1.39327 * 120.96921 * 0.02562 * 27 26 25 29 29 C 1.36188 * 120.95804 * 359.94175 * 28 27 26 30 30 C 1.40342 * 119.67478 * 0.08589 * 29 28 27 31 31 H 1.09003 * 109.47298 * 269.97640 * 1 2 3 32 32 H 1.08999 * 109.47077 * 29.97525 * 1 2 3 33 33 H 1.09000 * 109.46844 * 149.97589 * 1 2 3 34 34 H 1.07995 * 126.74735 * 359.97438 * 3 2 1 35 35 H 1.08004 * 120.00098 * 359.97438 * 5 4 3 36 36 H 0.96998 * 120.00113 * 359.97438 * 7 6 5 37 37 H 0.97008 * 119.99649 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.47118 * 270.12565 * 19 18 4 39 39 H 1.09000 * 109.47314 * 30.12886 * 19 18 4 40 40 H 1.09003 * 109.47325 * 150.12494 * 19 18 4 41 41 H 1.07999 * 119.62374 * 0.03395 * 22 21 20 42 42 H 1.08001 * 119.46306 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.02410 * 179.70490 * 24 23 22 44 44 H 1.07999 * 120.17589 * 359.97438 * 26 25 24 45 45 H 1.07993 * 119.51301 * 179.97438 * 27 26 25 46 46 H 1.08001 * 119.52047 * 180.02562 * 28 27 26 47 47 H 1.08011 * 120.16407 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2851 1.0963 0.0000 4 6 3.6741 0.6219 -0.0006 5 6 4.8857 1.4418 -0.0003 6 7 6.0643 0.8693 -0.0005 7 7 7.2245 1.6544 0.0003 8 6 8.4368 1.0655 0.0007 9 8 8.5238 -0.1522 0.0008 10 6 9.5964 1.8501 0.0010 11 1 9.5195 2.9274 0.0013 12 6 10.8565 1.2380 0.0008 13 7 10.9496 -0.0654 0.0009 14 14 12.4036 2.2849 0.0019 15 1 12.0288 3.7218 0.0023 16 1 13.2056 1.9817 1.2144 17 1 13.2061 1.9833 -1.2107 18 6 3.6021 -0.7680 0.0043 19 6 4.7738 -1.7158 0.0114 20 7 2.3004 -1.1178 -0.0006 21 6 1.8273 -2.4318 -0.0003 22 6 1.5913 -3.0866 -1.1909 23 6 1.1196 -4.3952 -1.2016 24 6 0.8775 -5.0650 -0.0404 25 6 1.1049 -4.4338 1.1943 26 6 0.8634 -5.1002 2.4082 27 6 1.0940 -4.4586 3.5865 28 6 1.5665 -3.1481 3.6087 29 6 1.8120 -2.4722 2.4522 30 6 1.5853 -3.1012 1.2183 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.9533 2.1241 -0.0004 35 1 4.8088 2.5191 0.0000 36 1 7.1554 2.6219 0.0006 37 1 11.8222 -0.4893 0.0005 38 1 5.0608 -1.9463 -1.0146 39 1 5.6137 -1.2513 0.5280 40 1 4.4944 -2.6352 0.5259 41 1 1.7750 -2.5776 -2.1256 42 1 0.9416 -4.8880 -2.1460 43 1 0.5068 -6.0790 -0.0686 44 1 0.4960 -6.1158 2.4061 45 1 0.9073 -4.9728 4.5176 46 1 1.7418 -2.6616 4.5569 47 1 2.1778 -1.4564 2.4844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004739227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:26 Heat of formation + Delta-G solvation = 76.856693 kcal Electronic energy + Delta-G solvation = -30784.194946 eV Core-core repulsion = 26704.619129 eV Total energy + Delta-G solvation = -4079.575818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.73930 -40.87416 -39.49121 -37.54521 -36.89483 -34.84716 -34.55768 -33.75740 -32.50615 -31.41466 -31.29000 -30.07597 -29.40159 -28.47275 -25.62162 -24.75792 -24.04416 -23.85138 -22.74131 -21.78186 -20.98103 -20.04501 -18.93299 -18.57451 -18.21243 -17.64916 -17.54713 -17.13587 -16.72635 -15.98564 -15.90209 -15.25657 -15.15733 -15.04842 -15.01328 -14.68740 -14.51379 -14.38551 -14.36624 -14.14133 -13.92144 -13.76229 -13.39252 -13.26395 -13.15530 -13.07978 -12.98648 -12.88280 -12.69738 -12.60230 -12.45339 -12.34441 -12.02636 -11.97961 -11.95667 -11.00644 -10.99361 -10.74873 -10.15085 -9.91873 -9.70908 -9.17816 -8.94067 -8.44426 -8.40365 -7.06988 -0.65105 -0.06755 0.58221 0.87899 1.34310 1.38484 1.41391 1.58434 1.82299 1.92787 2.14513 2.27848 2.45031 2.54744 2.99310 3.61257 3.66535 3.70545 3.80888 3.86851 3.92127 4.02122 4.04664 4.19188 4.20140 4.30244 4.35042 4.45427 4.51083 4.58178 4.58648 4.68267 4.72055 4.76297 4.86899 4.94837 5.02097 5.07391 5.08012 5.11322 5.18881 5.19894 5.31150 5.39448 5.43904 5.50986 5.54226 5.69984 5.86231 5.94109 5.96635 6.09753 6.18738 6.54176 6.69744 7.08016 7.55039 8.44515 8.65471 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.002215 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.871590 B =12637.480853 C =13403.700657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.014 3.986 3 C -0.163 4.163 4 C -0.158 4.158 5 C 0.107 3.893 6 N -0.274 5.274 7 N -0.601 5.601 8 C 0.547 3.453 9 O -0.618 6.618 10 C -0.562 4.562 11 H 0.092 0.908 12 C 0.029 3.971 13 N -0.800 5.800 14 Si 1.009 2.991 15 H -0.244 1.244 16 H -0.265 1.265 17 H -0.265 1.265 18 C 0.064 3.936 19 C -0.070 4.070 20 N -0.392 5.392 21 C 0.090 3.910 22 C -0.097 4.097 23 C -0.116 4.116 24 C -0.081 4.081 25 C -0.066 4.066 26 C -0.099 4.099 27 C -0.119 4.119 28 C -0.110 4.110 29 C -0.130 4.130 30 C -0.056 4.056 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.173 0.827 35 H 0.132 0.868 36 H 0.379 0.621 37 H 0.280 0.720 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.129 0.871 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.137 0.863 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.234 -6.977 2.399 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.188 4.188 4 C -0.168 4.168 5 C -0.102 4.102 6 N -0.082 5.082 7 N -0.346 5.346 8 C 0.356 3.644 9 O -0.503 6.503 10 C -0.599 4.599 11 H 0.110 0.890 12 C -0.189 4.189 13 N -0.428 5.428 14 Si 0.827 3.173 15 H -0.167 1.167 16 H -0.189 1.189 17 H -0.189 1.189 18 C -0.052 4.052 19 C -0.128 4.128 20 N -0.066 5.066 21 C 0.001 3.999 22 C -0.116 4.116 23 C -0.135 4.135 24 C -0.099 4.099 25 C -0.066 4.066 26 C -0.117 4.117 27 C -0.137 4.137 28 C -0.128 4.128 29 C -0.148 4.148 30 C -0.057 4.057 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.190 0.810 35 H 0.149 0.851 36 H 0.216 0.784 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.146 0.854 42 H 0.179 0.821 43 H 0.187 0.813 44 H 0.182 0.818 45 H 0.172 0.828 46 H 0.154 0.846 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -26.537 -9.052 2.395 28.140 hybrid contribution 0.906 1.915 -0.035 2.119 sum -25.631 -7.136 2.360 26.710 Atomic orbital electron populations 1.20352 0.85625 1.04027 1.03164 1.20842 0.94729 0.84113 1.09507 1.21910 0.88805 0.98735 1.09379 1.19217 0.91850 0.90195 1.15489 1.23784 0.89076 0.97814 0.99490 1.75124 0.94322 1.26185 1.12556 1.47275 1.02762 1.06880 1.77683 1.16948 0.81395 0.88212 0.77823 1.90667 1.86252 1.16339 1.57072 1.20170 0.90591 0.95491 1.53606 0.89012 1.27137 1.04592 0.96319 0.90857 1.70238 1.26897 1.12544 1.33131 0.84813 0.74732 0.78887 0.78846 1.16695 1.18930 1.18925 1.21007 0.84238 0.94355 1.05611 1.20171 0.94366 0.96437 1.01823 1.40724 1.04363 1.04051 1.57468 1.17783 1.03940 0.84128 0.94002 1.21505 0.97472 0.96108 0.96541 1.21051 0.99031 0.92898 1.00479 1.21577 0.96873 1.01115 0.90289 1.18337 1.00128 0.92169 0.95986 1.21462 0.98655 1.01001 0.90533 1.21255 0.98401 0.94233 0.99814 1.21195 0.97696 0.95684 0.98215 1.20958 1.01223 0.99955 0.92663 1.18229 1.00381 0.94707 0.92423 0.90678 0.87947 0.91921 0.80999 0.85079 0.78353 0.90963 0.92245 0.90950 0.92437 0.85352 0.82079 0.81327 0.81759 0.82794 0.84556 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.03 71.24 0.71 -0.56 16 2 C 0.01 0.36 6.82 40.87 0.28 0.64 16 3 C -0.16 -4.42 10.99 23.64 0.26 -4.16 16 4 C -0.16 -5.64 6.34 -18.72 -0.12 -5.75 16 5 C 0.11 4.21 11.05 86.91 0.96 5.17 16 6 N -0.27 -13.66 8.64 -52.42 -0.45 -14.11 16 7 N -0.60 -31.61 6.26 -180.88 -1.13 -32.74 16 8 C 0.55 34.50 7.63 84.67 0.65 35.15 16 9 O -0.62 -44.83 15.18 -5.56 -0.08 -44.92 16 10 C -0.56 -32.93 9.22 23.15 0.21 -32.72 16 11 H 0.09 4.75 7.85 -2.91 -0.02 4.72 16 12 C 0.03 1.66 5.49 85.32 0.47 2.12 16 13 N -0.80 -49.77 11.69 21.84 0.26 -49.51 16 14 Si 1.01 40.86 29.56 68.60 2.03 42.89 16 15 H -0.24 -9.08 7.11 99.48 0.71 -8.37 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 18 C 0.06 2.33 6.95 42.33 0.29 2.62 16 19 C -0.07 -2.88 9.48 71.24 0.68 -2.21 16 20 N -0.39 -11.52 1.85 -317.28 -0.59 -12.10 16 21 C 0.09 2.35 4.21 38.53 0.16 2.51 16 22 C -0.10 -2.10 9.92 22.40 0.22 -1.88 16 23 C -0.12 -1.77 9.94 22.01 0.22 -1.55 16 24 C -0.08 -1.13 9.75 22.36 0.22 -0.91 16 25 C -0.07 -1.24 5.74 -21.31 -0.12 -1.36 16 26 C -0.10 -1.42 9.77 22.35 0.22 -1.20 16 27 C -0.12 -1.81 9.95 22.04 0.22 -1.59 16 28 C -0.11 -2.20 9.95 22.05 0.22 -1.98 16 29 C -0.13 -3.32 9.54 22.30 0.21 -3.10 16 30 C -0.06 -1.39 5.75 -21.21 -0.12 -1.52 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.06 7.76 -2.39 -0.02 1.04 16 34 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.13 4.21 8.04 -2.91 -0.02 4.19 16 36 H 0.38 16.79 8.62 -213.33 -1.84 14.96 16 37 H 0.28 15.51 8.29 -92.70 -0.77 14.74 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.07 3.58 6.35 -2.39 -0.02 3.57 16 40 H 0.06 2.17 7.76 -2.39 -0.02 2.15 16 41 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 42 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 43 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 44 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 46 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 47 H 0.10 3.06 7.54 -2.90 -0.02 3.04 16 Total: -1.00 -88.57 406.06 5.04 -83.54 By element: Atomic # 1 Polarization: 40.07 SS G_CDS: -0.83 Total: 39.24 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 5.84 Total: -12.28 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -1.92 Total: -108.47 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -0.08 Total: -44.92 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -88.57 5.04 -83.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004739227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.394 kcal (2) G-P(sol) polarization free energy of solvation -88.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds