Wall clock time and date at job start Tue Mar 31 2020 05:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38240 * 119.99842 * 2 1 4 4 C 1.38231 * 119.99948 * 179.72544 * 3 2 1 5 5 C 1.38237 * 119.99962 * 0.28239 * 4 3 2 6 6 C 1.50705 * 120.00041 * 179.97438 * 5 4 3 7 7 N 1.46495 * 109.47099 * 89.99799 * 6 5 4 8 8 C 1.34519 * 124.62226 * 264.70211 * 7 6 5 9 9 C 1.39124 * 109.43537 * 179.88845 * 8 7 6 10 10 C 1.41521 * 126.95988 * 180.14101 * 9 8 7 11 11 N 1.31267 * 119.99369 * 180.25622 * 10 9 8 12 12 N 1.40105 * 119.99335 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99815 * 180.02562 * 12 11 10 14 14 O 1.22111 * 119.99855 * 359.97438 * 13 12 11 15 15 C 1.39716 * 120.00036 * 179.97438 * 13 12 11 16 16 H 1.07995 * 120.00433 * 353.67012 * 15 13 12 17 17 C 1.40049 * 119.99932 * 173.66667 * 15 13 12 18 18 N 1.30701 * 119.99759 * 6.31723 * 17 15 13 19 19 Si 1.86801 * 120.00069 * 186.31054 * 17 15 13 20 20 H 1.48496 * 109.47126 * 94.99070 * 19 17 15 21 21 H 1.48501 * 109.47080 * 214.99330 * 19 17 15 22 22 H 1.48504 * 109.46938 * 334.98485 * 19 17 15 23 23 C 1.47441 * 106.07668 * 0.35909 * 9 8 7 24 24 C 1.39307 * 133.91301 * 179.81085 * 23 9 8 25 25 C 1.37925 * 119.66471 * 179.97438 * 24 23 9 26 26 C 1.38628 * 120.24255 * 359.97438 * 25 24 23 27 27 C 1.38026 * 120.64793 * 0.04103 * 26 25 24 28 28 C 1.38258 * 124.61845 * 84.99755 * 7 6 5 29 29 C 1.38235 * 120.00170 * 359.97438 * 5 4 3 30 30 C 1.38233 * 119.99823 * 359.97438 * 29 5 4 31 31 H 1.09001 * 109.47482 * 89.99957 * 1 2 3 32 32 H 1.08998 * 109.47059 * 209.99387 * 1 2 3 33 33 H 1.08997 * 109.47297 * 329.99227 * 1 2 3 34 34 H 1.07996 * 119.99770 * 0.02562 * 3 2 1 35 35 H 1.07997 * 120.00229 * 180.25396 * 4 3 2 36 36 H 1.08998 * 109.46934 * 210.00252 * 6 5 4 37 37 H 1.09004 * 109.46832 * 330.00042 * 6 5 4 38 38 H 1.08003 * 125.28518 * 0.02562 * 8 7 6 39 39 H 1.07990 * 120.00196 * 0.26272 * 10 9 8 40 40 H 0.96996 * 120.00222 * 0.02562 * 12 11 10 41 41 H 0.96999 * 119.99515 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.16903 * 359.97438 * 24 23 9 43 43 H 1.07996 * 119.87694 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.67711 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.01272 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.00399 * 179.97438 * 29 5 4 47 47 H 1.07997 * 120.00138 * 179.97438 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0057 5 6 4.2717 0.0001 0.0056 6 6 5.7787 0.0001 0.0112 7 7 6.2618 -0.0030 1.3942 8 6 6.6103 1.0977 2.0846 9 6 7.0190 0.7321 3.3632 10 6 7.4598 1.5948 4.3948 11 7 7.8204 1.0990 5.5556 12 7 8.2562 1.9532 6.5770 13 6 8.6270 1.4442 7.7687 14 8 8.5825 0.2387 7.9581 15 6 9.0622 2.2959 8.7871 16 1 9.1992 3.3487 8.5891 17 6 9.3206 1.7844 10.0650 18 7 9.2747 0.4951 10.2744 19 14 9.7311 2.9448 11.4701 20 1 8.4950 3.2567 12.2318 21 1 10.7190 2.3000 12.3721 22 1 10.3058 4.2003 10.9234 23 6 6.9048 -0.7366 3.4240 24 6 7.1623 -1.6857 4.4107 25 6 6.9459 -3.0219 4.1458 26 6 6.4741 -3.4200 2.9045 27 6 6.2155 -2.4895 1.9185 28 6 6.4272 -1.1383 2.1659 29 6 3.5806 -1.1971 0.0002 30 6 2.1983 -1.1971 -0.0045 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3634 0.8899 0.5139 34 1 1.6581 2.1324 0.0004 35 1 4.1205 2.1325 0.0099 36 1 6.1440 -0.8887 -0.5033 37 1 6.1439 0.8913 -0.4992 38 1 6.5760 2.1085 1.7058 39 1 7.4993 2.6609 4.2272 40 1 8.2912 2.9108 6.4266 41 1 9.4541 0.1408 11.1594 42 1 7.5295 -1.3768 5.3783 43 1 7.1440 -3.7605 4.9083 44 1 6.3075 -4.4687 2.7071 45 1 5.8486 -2.8111 0.9551 46 1 4.1206 -2.1324 -0.0003 47 1 1.6583 -2.1324 -0.0091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004739380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:10 Heat of formation + Delta-G solvation = 87.824551 kcal Electronic energy + Delta-G solvation = -30080.041723 eV Core-core repulsion = 26000.941507 eV Total energy + Delta-G solvation = -4079.100215 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.25521 -39.60066 -37.46497 -36.85210 -35.37703 -34.18798 -32.66405 -32.10758 -31.27520 -30.24236 -30.02094 -28.74685 -27.83230 -26.44905 -24.91269 -23.17432 -22.68677 -22.37767 -21.40970 -20.70619 -19.75072 -19.05414 -17.54457 -16.81149 -16.55399 -16.34114 -15.79929 -15.59395 -15.52548 -15.42037 -14.98148 -14.51126 -14.18418 -14.05351 -13.82934 -13.71073 -13.49602 -13.17630 -12.92632 -12.89542 -12.77885 -12.62350 -12.36415 -12.20397 -12.15539 -11.71507 -11.44185 -11.36920 -11.28186 -11.23809 -11.08578 -10.78008 -10.60544 -10.53827 -10.30858 -9.32404 -9.22473 -9.21428 -8.92742 -8.88841 -7.97798 -7.89684 -7.64623 -6.61085 -6.33527 -4.87789 0.88824 1.10381 1.28713 1.87703 2.24737 2.82607 3.07851 3.14630 3.18734 3.51162 3.66021 3.90114 4.21002 4.29793 4.32935 4.39263 4.53093 4.59891 4.62219 4.66281 4.81884 4.96885 5.01132 5.05111 5.16811 5.19393 5.23177 5.37854 5.43793 5.45239 5.55955 5.66186 5.75289 5.75965 5.87176 5.87757 5.99668 6.00381 6.06699 6.21258 6.27346 6.43799 6.56074 6.66873 6.67103 6.88659 6.92446 7.14588 7.21907 7.27194 7.41420 7.50595 7.97278 8.08717 8.82687 8.89610 9.44361 10.45709 10.77061 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.002019 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.402099 B =13863.884709 C =14645.712815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.123 4.123 4 C -0.095 4.095 5 C -0.119 4.119 6 C 0.152 3.848 7 N -0.463 5.463 8 C 0.060 3.940 9 C -0.112 4.112 10 C 0.054 3.946 11 N -0.196 5.196 12 N -0.593 5.593 13 C 0.561 3.439 14 O -0.557 6.557 15 C -0.538 4.538 16 H 0.069 0.931 17 C 0.088 3.912 18 N -0.743 5.743 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.075 4.075 24 C -0.049 4.049 25 C -0.153 4.153 26 C -0.102 4.102 27 C -0.139 4.139 28 C 0.088 3.912 29 C -0.092 4.092 30 C -0.122 4.122 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.170 0.830 39 H 0.101 0.899 40 H 0.365 0.635 41 H 0.273 0.727 42 H 0.144 0.856 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.122 0.878 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.144 -0.214 -24.705 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.113 4.113 5 C -0.120 4.120 6 C 0.030 3.970 7 N -0.144 5.144 8 C -0.073 4.073 9 C -0.121 4.121 10 C -0.154 4.154 11 N -0.006 5.006 12 N -0.339 5.339 13 C 0.369 3.631 14 O -0.437 6.437 15 C -0.575 4.575 16 H 0.088 0.912 17 C -0.135 4.135 18 N -0.370 5.370 19 Si 0.739 3.261 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.079 4.079 24 C -0.067 4.067 25 C -0.172 4.172 26 C -0.121 4.121 27 C -0.160 4.160 28 C -0.016 4.016 29 C -0.111 4.111 30 C -0.140 4.140 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.188 0.812 39 H 0.118 0.882 40 H 0.201 0.799 41 H 0.084 0.916 42 H 0.162 0.838 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.140 0.860 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.043 -1.979 -23.996 27.384 hybrid contribution 0.098 2.045 0.207 2.058 sum -12.945 0.066 -23.789 27.083 Atomic orbital electron populations 1.20820 0.91138 1.03038 1.02316 1.19997 0.96204 0.93254 0.98535 1.21023 0.94096 0.97648 1.01304 1.21008 0.94288 0.97344 0.98671 1.20039 0.95143 0.93843 1.02972 1.20615 0.90289 1.04812 0.81267 1.43236 1.54879 1.04950 1.11361 1.22133 1.02535 0.91051 0.91565 1.17900 1.10330 0.91045 0.92854 1.22042 1.05103 0.96125 0.92097 1.75157 1.04507 1.24071 0.96913 1.47994 1.67754 1.06205 1.11937 1.16461 0.78880 0.89255 0.78487 1.90747 1.58098 1.15544 1.79334 1.19529 1.47059 0.95977 0.94886 0.91245 1.25743 0.92970 0.95187 0.99618 1.70079 1.31907 1.12592 1.22424 0.86233 0.78828 0.80674 0.80343 1.19542 1.20176 1.18670 1.18989 1.03185 0.92756 0.93015 1.21068 0.95064 0.91365 0.99252 1.20981 1.03191 0.95906 0.97144 1.20760 0.99818 0.98295 0.93277 1.19862 1.07006 0.89375 0.99755 1.18236 1.04043 0.87952 0.91348 1.21061 0.94289 0.97477 0.98238 1.21031 0.94088 0.97672 1.01181 0.91103 0.91404 0.91413 0.85936 0.85936 0.88855 0.88344 0.81238 0.88197 0.79948 0.91612 0.83827 0.86116 0.86350 0.87236 0.85972 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.01 36.01 0.36 -0.35 16 2 C -0.08 -0.67 5.88 -104.62 -0.62 -1.28 16 3 C -0.12 -1.02 9.70 -39.58 -0.38 -1.40 16 4 C -0.09 -0.79 9.70 -39.58 -0.38 -1.18 16 5 C -0.12 -1.05 5.46 -104.62 -0.57 -1.62 16 6 C 0.15 1.23 6.05 -5.19 -0.03 1.19 16 7 N -0.46 -5.50 2.70 -114.89 -0.31 -5.81 16 8 C 0.06 0.75 11.28 -16.05 -0.18 0.57 16 9 C -0.11 -1.89 6.15 -104.57 -0.64 -2.53 16 10 C 0.05 1.00 10.78 -16.54 -0.18 0.82 16 11 N -0.20 -4.62 9.68 31.04 0.30 -4.32 16 12 N -0.59 -14.73 6.26 28.73 0.18 -14.55 16 13 C 0.56 16.71 7.61 -15.71 -0.12 16.59 16 14 O -0.56 -18.91 15.20 4.82 0.07 -18.84 16 15 C -0.54 -15.21 9.20 -38.35 -0.35 -15.56 16 16 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 17 C 0.09 2.44 5.49 -17.35 -0.10 2.35 16 18 N -0.74 -22.10 11.71 55.55 0.65 -21.45 16 19 Si 0.92 19.73 29.56 -169.99 -5.03 14.71 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.07 -1.35 6.23 -104.92 -0.65 -2.00 16 24 C -0.05 -0.95 9.77 -39.30 -0.38 -1.34 16 25 C -0.15 -2.48 10.04 -39.55 -0.40 -2.88 16 26 C -0.10 -1.39 10.02 -39.51 -0.40 -1.78 16 27 C -0.14 -1.82 9.95 -39.38 -0.39 -2.21 16 28 C 0.09 1.30 6.78 -83.86 -0.57 0.73 16 29 C -0.09 -0.83 9.70 -39.58 -0.38 -1.21 16 30 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.10 0.56 8.04 -51.93 -0.42 0.14 16 38 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.10 1.52 8.04 -52.49 -0.42 1.09 16 40 H 0.37 7.67 8.62 -182.60 -1.57 6.09 16 41 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 42 H 0.14 3.31 7.15 -52.49 -0.38 2.94 16 43 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 45 H 0.11 1.10 6.88 -52.49 -0.36 0.74 16 46 H 0.12 0.96 6.88 -52.49 -0.36 0.60 16 47 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 408.45 15.07 6.16 6.16 Total: -1.00 -38.06 408.45 -12.01 -50.07 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.28 Total: 8.58 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -6.75 Total: -14.53 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.82 Total: -46.14 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.07 Total: -18.84 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -38.06 -12.01 -50.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004739380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.895 kcal (2) G-P(sol) polarization free energy of solvation -38.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds