Wall clock time and date at job start Tue Mar 31 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38240 * 119.99842 * 2 1 4 4 C 1.38231 * 119.99948 * 179.72544 * 3 2 1 5 5 C 1.38237 * 119.99962 * 0.28239 * 4 3 2 6 6 C 1.50705 * 120.00041 * 179.97438 * 5 4 3 7 7 N 1.46495 * 109.47099 * 89.99799 * 6 5 4 8 8 C 1.34519 * 124.62226 * 264.70211 * 7 6 5 9 9 C 1.39124 * 109.43537 * 179.88845 * 8 7 6 10 10 C 1.41521 * 126.95988 * 180.14101 * 9 8 7 11 11 N 1.31267 * 119.99369 * 180.25622 * 10 9 8 12 12 N 1.40105 * 119.99335 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99815 * 180.02562 * 12 11 10 14 14 O 1.22111 * 119.99855 * 359.97438 * 13 12 11 15 15 C 1.39716 * 120.00036 * 179.97438 * 13 12 11 16 16 H 1.07995 * 120.00433 * 353.67012 * 15 13 12 17 17 C 1.40049 * 119.99932 * 173.66667 * 15 13 12 18 18 N 1.30701 * 119.99759 * 6.31723 * 17 15 13 19 19 Si 1.86801 * 120.00069 * 186.31054 * 17 15 13 20 20 H 1.48496 * 109.47126 * 94.99070 * 19 17 15 21 21 H 1.48501 * 109.47080 * 214.99330 * 19 17 15 22 22 H 1.48504 * 109.46938 * 334.98485 * 19 17 15 23 23 C 1.47441 * 106.07668 * 0.35909 * 9 8 7 24 24 C 1.39307 * 133.91301 * 179.81085 * 23 9 8 25 25 C 1.37925 * 119.66471 * 179.97438 * 24 23 9 26 26 C 1.38628 * 120.24255 * 359.97438 * 25 24 23 27 27 C 1.38026 * 120.64793 * 0.04103 * 26 25 24 28 28 C 1.38258 * 124.61845 * 84.99755 * 7 6 5 29 29 C 1.38235 * 120.00170 * 359.97438 * 5 4 3 30 30 C 1.38233 * 119.99823 * 359.97438 * 29 5 4 31 31 H 1.09001 * 109.47482 * 89.99957 * 1 2 3 32 32 H 1.08998 * 109.47059 * 209.99387 * 1 2 3 33 33 H 1.08997 * 109.47297 * 329.99227 * 1 2 3 34 34 H 1.07996 * 119.99770 * 0.02562 * 3 2 1 35 35 H 1.07997 * 120.00229 * 180.25396 * 4 3 2 36 36 H 1.08998 * 109.46934 * 210.00252 * 6 5 4 37 37 H 1.09004 * 109.46832 * 330.00042 * 6 5 4 38 38 H 1.08003 * 125.28518 * 0.02562 * 8 7 6 39 39 H 1.07990 * 120.00196 * 0.26272 * 10 9 8 40 40 H 0.96996 * 120.00222 * 0.02562 * 12 11 10 41 41 H 0.96999 * 119.99515 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.16903 * 359.97438 * 24 23 9 43 43 H 1.07996 * 119.87694 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.67711 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.01272 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.00399 * 179.97438 * 29 5 4 47 47 H 1.07997 * 120.00138 * 179.97438 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0057 5 6 4.2717 0.0001 0.0056 6 6 5.7787 0.0001 0.0112 7 7 6.2618 -0.0030 1.3942 8 6 6.6103 1.0977 2.0846 9 6 7.0190 0.7321 3.3632 10 6 7.4598 1.5948 4.3948 11 7 7.8204 1.0990 5.5556 12 7 8.2562 1.9532 6.5770 13 6 8.6270 1.4442 7.7687 14 8 8.5825 0.2387 7.9581 15 6 9.0622 2.2959 8.7871 16 1 9.1992 3.3487 8.5891 17 6 9.3206 1.7844 10.0650 18 7 9.2747 0.4951 10.2744 19 14 9.7311 2.9448 11.4701 20 1 8.4950 3.2567 12.2318 21 1 10.7190 2.3000 12.3721 22 1 10.3058 4.2003 10.9234 23 6 6.9048 -0.7366 3.4240 24 6 7.1623 -1.6857 4.4107 25 6 6.9459 -3.0219 4.1458 26 6 6.4741 -3.4200 2.9045 27 6 6.2155 -2.4895 1.9185 28 6 6.4272 -1.1383 2.1659 29 6 3.5806 -1.1971 0.0002 30 6 2.1983 -1.1971 -0.0045 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3634 0.8899 0.5139 34 1 1.6581 2.1324 0.0004 35 1 4.1205 2.1325 0.0099 36 1 6.1440 -0.8887 -0.5033 37 1 6.1439 0.8913 -0.4992 38 1 6.5760 2.1085 1.7058 39 1 7.4993 2.6609 4.2272 40 1 8.2912 2.9108 6.4266 41 1 9.4541 0.1408 11.1594 42 1 7.5295 -1.3768 5.3783 43 1 7.1440 -3.7605 4.9083 44 1 6.3075 -4.4687 2.7071 45 1 5.8486 -2.8111 0.9551 46 1 4.1206 -2.1324 -0.0003 47 1 1.6583 -2.1324 -0.0091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004739380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:08 Heat of formation + Delta-G solvation = 64.175577 kcal Electronic energy + Delta-G solvation = -30081.067219 eV Core-core repulsion = 26000.941507 eV Total energy + Delta-G solvation = -4080.125712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.33855 -40.22782 -39.47533 -37.97422 -37.01476 -35.17183 -34.63422 -33.44383 -31.89366 -31.70580 -31.07814 -29.93797 -29.12235 -28.06624 -25.77658 -24.19131 -23.61788 -23.53665 -22.48655 -21.86452 -21.25370 -20.45603 -19.27472 -17.94014 -17.85716 -17.53584 -17.15980 -16.89741 -16.33486 -16.29090 -16.08709 -15.86618 -15.43265 -15.06852 -14.94155 -14.77646 -14.66519 -14.54045 -14.25582 -14.14135 -13.81671 -13.50177 -13.31702 -13.22985 -13.13676 -12.81900 -12.78237 -12.70223 -12.66207 -12.53848 -12.44903 -12.00552 -11.89659 -11.85184 -11.74833 -11.00809 -10.67152 -10.62799 -9.91361 -9.81805 -9.52749 -9.50382 -9.13319 -8.40920 -8.06512 -7.06090 0.06499 0.27884 0.51301 0.64457 0.96724 1.37788 1.40611 1.57458 1.88610 2.16713 2.26710 2.50358 2.55359 2.88548 3.07231 3.70632 3.72586 3.75342 3.80696 3.84952 4.04450 4.07967 4.08282 4.15634 4.27302 4.35919 4.41575 4.52336 4.58814 4.62076 4.67791 4.78907 4.80569 4.84832 4.85418 4.94423 5.09839 5.18451 5.18709 5.25885 5.30827 5.33618 5.48477 5.58072 5.59571 5.70493 5.72292 5.84313 5.88652 5.90891 6.10636 6.11994 6.30151 6.40209 6.69252 7.13310 7.60286 8.45215 8.67541 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.002019 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.402099 B =13863.884709 C =14645.712815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.100 4.100 5 C -0.131 4.131 6 C 0.146 3.854 7 N -0.449 5.449 8 C 0.133 3.867 9 C -0.196 4.196 10 C 0.107 3.893 11 N -0.286 5.286 12 N -0.601 5.601 13 C 0.546 3.454 14 O -0.622 6.622 15 C -0.564 4.564 16 H 0.093 0.907 17 C 0.027 3.973 18 N -0.801 5.801 19 Si 1.012 2.988 20 H -0.260 1.260 21 H -0.268 1.268 22 H -0.243 1.243 23 C -0.098 4.098 24 C -0.101 4.101 25 C -0.155 4.155 26 C -0.107 4.107 27 C -0.117 4.117 28 C 0.077 3.923 29 C -0.105 4.105 30 C -0.139 4.139 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.111 0.889 37 H 0.136 0.864 38 H 0.227 0.773 39 H 0.138 0.862 40 H 0.379 0.621 41 H 0.280 0.720 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.156 0.844 45 H 0.152 0.848 46 H 0.131 0.869 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.485 2.001 -28.886 32.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.092 4.092 3 C -0.155 4.155 4 C -0.119 4.119 5 C -0.132 4.132 6 C 0.027 3.973 7 N -0.128 5.128 8 C -0.004 4.004 9 C -0.206 4.206 10 C -0.100 4.100 11 N -0.095 5.095 12 N -0.346 5.346 13 C 0.355 3.645 14 O -0.508 6.508 15 C -0.600 4.600 16 H 0.111 0.889 17 C -0.191 4.191 18 N -0.429 5.429 19 Si 0.829 3.171 20 H -0.184 1.184 21 H -0.193 1.193 22 H -0.166 1.166 23 C -0.103 4.103 24 C -0.120 4.120 25 C -0.174 4.174 26 C -0.126 4.126 27 C -0.137 4.137 28 C -0.027 4.027 29 C -0.123 4.123 30 C -0.157 4.157 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.129 0.871 37 H 0.154 0.846 38 H 0.244 0.756 39 H 0.155 0.845 40 H 0.216 0.784 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.138 0.862 44 H 0.173 0.827 45 H 0.170 0.830 46 H 0.149 0.851 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.413 0.251 -28.268 31.731 hybrid contribution 0.267 1.305 0.954 1.638 sum -14.145 1.556 -27.314 30.798 Atomic orbital electron populations 1.20856 0.90025 1.03309 1.03120 1.20329 0.97334 0.93440 0.98059 1.21321 0.94647 0.98225 1.01344 1.21338 0.94465 0.98192 0.97882 1.20123 0.95424 0.93942 1.03689 1.21058 0.89872 1.07726 0.78610 1.43658 1.52709 1.03786 1.12633 1.22953 0.95319 0.93114 0.89018 1.18142 1.16552 0.90775 0.95108 1.22728 0.98523 0.98247 0.90506 1.75356 1.10963 1.24429 0.98726 1.47205 1.68864 1.06746 1.11780 1.16896 0.78671 0.88723 0.80202 1.90680 1.60987 1.17968 1.81177 1.20082 1.47401 0.96965 0.95552 0.88853 1.27193 0.91751 0.97175 1.02972 1.70264 1.33217 1.15714 1.23733 0.84821 0.78936 0.77990 0.75343 1.18447 1.19292 1.16615 1.19251 1.03345 0.93615 0.94111 1.20786 0.99373 0.93652 0.98160 1.21140 1.02818 0.94618 0.98856 1.21100 0.99232 1.00458 0.91849 1.20337 1.04015 0.88403 1.00935 1.18361 1.04249 0.89508 0.90559 1.21306 0.94582 0.98192 0.98229 1.21277 0.94488 0.98335 1.01564 0.89981 0.91275 0.91035 0.84625 0.83715 0.87062 0.84616 0.75622 0.84543 0.78404 0.90974 0.89626 0.86236 0.82658 0.83019 0.85068 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.01 71.24 0.71 -0.47 16 2 C -0.09 -1.30 5.88 -19.86 -0.12 -1.42 16 3 C -0.14 -1.84 9.70 22.27 0.22 -1.62 16 4 C -0.10 -1.22 9.70 22.27 0.22 -1.01 16 5 C -0.13 -1.69 5.46 -19.86 -0.11 -1.80 16 6 C 0.15 1.47 6.05 85.64 0.52 1.99 16 7 N -0.45 -8.55 2.70 -517.40 -1.40 -9.95 16 8 C 0.13 2.68 11.28 84.49 0.95 3.64 16 9 C -0.20 -6.50 6.15 -19.83 -0.12 -6.62 16 10 C 0.11 4.04 10.78 85.59 0.92 4.96 16 11 N -0.29 -14.68 9.68 -55.69 -0.54 -15.22 16 12 N -0.60 -32.20 6.26 -181.05 -1.13 -33.34 16 13 C 0.55 35.27 7.61 84.60 0.64 35.91 16 14 O -0.62 -46.62 15.20 -5.68 -0.09 -46.71 16 15 C -0.56 -33.55 9.20 23.07 0.21 -33.34 16 16 H 0.09 4.87 7.85 -2.91 -0.02 4.84 16 17 C 0.03 1.57 5.49 85.30 0.47 2.04 16 18 N -0.80 -50.88 11.71 21.84 0.26 -50.62 16 19 Si 1.01 41.37 29.56 68.60 2.03 43.40 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 23 C -0.10 -3.68 6.23 -20.06 -0.12 -3.80 16 24 C -0.10 -4.36 9.77 22.45 0.22 -4.14 16 25 C -0.16 -5.43 10.04 22.29 0.22 -5.21 16 26 C -0.11 -2.77 10.02 22.31 0.22 -2.55 16 27 C -0.12 -2.69 9.95 22.40 0.22 -2.47 16 28 C 0.08 2.10 6.78 38.85 0.26 2.37 16 29 C -0.10 -1.49 9.70 22.27 0.22 -1.28 16 30 C -0.14 -2.03 9.70 22.27 0.22 -1.82 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 33 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 34 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 35 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 36 H 0.11 0.83 8.09 -2.39 -0.02 0.81 16 37 H 0.14 0.48 8.04 -2.38 -0.02 0.46 16 38 H 0.23 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.14 3.89 8.04 -2.92 -0.02 3.87 16 40 H 0.38 16.82 8.62 -213.32 -1.84 14.98 16 41 H 0.28 15.85 8.29 -92.71 -0.77 15.08 16 42 H 0.09 4.66 7.15 -2.91 -0.02 4.64 16 43 H 0.12 3.98 8.06 -2.91 -0.02 3.95 16 44 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 45 H 0.15 2.21 6.88 -2.91 -0.02 2.19 16 46 H 0.13 1.51 6.88 -2.91 -0.02 1.49 16 47 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -98.07 408.45 4.27 -93.80 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -0.83 Total: 35.26 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 5.98 Total: -16.62 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -2.82 Total: -109.13 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -0.09 Total: -46.71 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -98.07 4.27 -93.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004739380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.975 kcal (2) G-P(sol) polarization free energy of solvation -98.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds