Wall clock time and date at job start Tue Mar 31 2020 05:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35946 * 117.00397 * 2 1 4 4 C 1.38539 * 119.99159 * 359.97438 * 3 2 1 5 5 C 1.38581 * 120.43901 * 179.97438 * 4 3 2 6 6 C 1.37726 * 120.43216 * 0.04078 * 5 4 3 7 7 C 1.40144 * 119.97359 * 359.97438 * 6 5 4 8 8 C 1.46469 * 120.21342 * 179.97438 * 7 6 5 9 9 C 1.36612 * 119.99984 * 327.37742 * 8 7 6 10 10 C 1.43206 * 119.99939 * 353.19347 * 9 8 7 11 11 N 6.60292 * 120.38045 * 338.85393 * 2 1 3 12 12 C 1.47406 * 120.00290 * 173.19399 * 9 8 7 13 13 N 1.31279 * 125.13710 * 0.02562 * 12 9 8 14 14 C 1.35483 * 109.63502 * 179.97438 * 13 12 9 15 15 C 1.39899 * 133.35995 * 180.02562 * 14 13 12 16 16 C 1.36590 * 119.89280 * 179.97438 * 15 14 13 17 17 C 1.38768 * 120.67578 * 359.97438 * 16 15 14 18 18 C 1.37925 * 120.46660 * 359.97438 * 17 16 15 19 19 C 1.38775 * 119.71953 * 0.04654 * 18 17 16 20 20 N 1.37039 * 125.14368 * 179.71897 * 12 9 8 21 21 H 0.96999 * 126.40700 * 359.97438 * 20 12 9 22 22 C 1.39215 * 120.00200 * 179.97438 * 3 2 1 23 23 O 1.35535 * 120.20665 * 359.97438 * 22 3 2 24 24 C 1.34734 * 116.99563 * 270.01651 * 23 22 3 25 25 H 1.08001 * 120.00336 * 0.02562 * 24 23 22 26 26 C 1.38715 * 119.99810 * 180.02562 * 24 23 22 27 27 N 1.31518 * 119.99802 * 0.02562 * 26 24 23 28 28 Si 1.86792 * 120.00111 * 180.02562 * 26 24 23 29 29 H 1.48494 * 109.47278 * 90.00051 * 28 26 24 30 30 H 1.48505 * 109.47288 * 210.00197 * 28 26 24 31 31 H 1.48505 * 109.47301 * 330.00049 * 28 26 24 32 32 H 1.08994 * 109.47280 * 299.99742 * 1 2 3 33 33 H 1.09000 * 109.47286 * 59.99845 * 1 2 3 34 34 H 1.09000 * 109.47175 * 179.97438 * 1 2 3 35 35 H 1.07998 * 119.77800 * 359.97438 * 4 3 2 36 36 H 1.08005 * 119.78281 * 180.02562 * 5 4 3 37 37 H 1.07995 * 120.01093 * 180.25585 * 6 5 4 38 38 H 1.07995 * 120.00402 * 147.37840 * 8 7 6 39 39 H 1.08004 * 120.05577 * 359.97438 * 15 14 13 40 40 H 1.08001 * 119.66217 * 180.02562 * 16 15 14 41 41 H 1.08001 * 119.76747 * 179.97438 * 17 16 15 42 42 H 1.08007 * 120.14512 * 180.02562 * 18 17 16 43 43 H 0.96994 * 119.99880 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2916 2.3731 -0.0005 5 6 1.9112 3.6127 0.0000 6 6 3.2853 3.7058 0.0002 7 6 4.0659 2.5419 0.0004 8 6 5.5277 2.6347 0.0001 9 6 6.1460 3.6723 -0.6382 10 6 5.3778 4.5868 -1.4284 11 7 4.7683 5.3127 -2.0549 12 6 7.6039 3.8505 -0.5136 13 7 8.4033 3.0751 0.1815 14 6 9.6771 3.5250 0.0785 15 6 10.8966 3.0853 0.6045 16 6 12.0465 3.7634 0.3157 17 6 12.0203 4.8879 -0.4970 18 6 10.8301 5.3395 -1.0278 19 6 9.6509 4.6644 -0.7457 20 7 8.3307 4.8473 -1.1106 21 1 7.9832 5.5500 -1.6818 22 6 3.4365 1.2841 0.0005 23 8 4.1787 0.1500 0.0016 24 6 4.5129 -0.3611 1.2026 25 1 4.1898 0.1313 2.1079 26 6 5.2719 -1.5199 1.2763 27 7 5.6657 -2.1192 0.1739 28 14 5.7345 -2.2290 2.9413 29 1 4.6861 -3.1841 3.3813 30 1 7.0355 -2.9370 2.8337 31 1 5.8500 -1.1295 3.9329 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 0.2133 2.3123 -0.0014 36 1 1.3125 4.5116 0.0000 37 1 3.7610 4.6753 0.0048 38 1 6.1167 1.8830 0.5044 39 1 10.9287 2.2111 1.2379 40 1 12.9860 3.4204 0.7234 41 1 12.9383 5.4131 -0.7155 42 1 10.8157 6.2150 -1.6601 43 1 6.1968 -2.9292 0.2254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004855427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:49 Heat of formation + Delta-G solvation = 94.821136 kcal Electronic energy + Delta-G solvation = -30490.223874 eV Core-core repulsion = 26275.593959 eV Total energy + Delta-G solvation = -4214.629915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.01335 -39.97386 -38.05794 -37.34544 -36.80630 -35.98276 -33.91139 -33.05536 -31.98545 -30.29561 -29.92495 -29.31920 -28.20385 -26.98020 -25.04715 -24.27927 -22.65628 -22.40485 -21.77441 -21.17489 -20.70415 -18.56380 -18.02636 -17.67352 -16.89719 -16.43584 -16.41803 -16.11419 -15.33340 -15.28097 -14.92833 -14.75521 -14.37321 -14.29649 -14.06280 -13.94452 -13.77881 -13.57632 -13.47607 -13.26654 -12.67774 -12.41733 -12.14306 -12.05247 -11.94924 -11.75042 -11.67936 -11.52952 -11.44999 -11.09463 -10.92953 -10.85638 -10.75578 -10.34150 -10.22035 -9.90451 -9.86400 -9.66665 -8.54260 -8.27847 -8.23992 -7.67023 -7.52539 -6.07738 -3.78994 0.35262 1.12115 1.50594 1.78148 2.01104 2.61033 2.75536 2.78494 3.29115 3.32207 3.36033 3.54635 3.67010 3.72327 3.90429 4.02203 4.31411 4.45989 4.51122 4.88066 4.97734 5.03924 5.07508 5.15564 5.21865 5.29345 5.31914 5.38206 5.39365 5.42763 5.52791 5.59491 5.69109 5.70256 5.78909 5.99414 6.09996 6.24370 6.35742 6.45753 6.48392 6.52014 6.59862 6.62609 6.75984 6.84554 7.03280 7.24228 7.38477 7.51286 7.83267 7.89568 8.27526 9.34532 9.97810 11.10711 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.008749 B = 0.003443 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.446664 B = 8129.629573 C =10924.903665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.286 6.286 3 C 0.091 3.909 4 C -0.180 4.180 5 C -0.115 4.115 6 C -0.117 4.117 7 C -0.115 4.115 8 C 0.117 3.883 9 C -0.078 4.078 10 C 0.265 3.735 11 N -0.425 5.425 12 C 0.356 3.644 13 N -0.470 5.470 14 C 0.058 3.942 15 C -0.060 4.060 16 C -0.131 4.131 17 C -0.106 4.106 18 C -0.113 4.113 19 C 0.048 3.952 20 N -0.601 5.601 21 H 0.421 0.579 22 C 0.165 3.835 23 O -0.221 6.221 24 C -0.372 4.372 25 H 0.071 0.929 26 C 0.039 3.961 27 N -0.875 5.875 28 Si 0.929 3.071 29 H -0.280 1.280 30 H -0.281 1.281 31 H -0.271 1.271 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.178 0.822 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.906 13.193 0.207 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.199 6.199 3 C 0.044 3.956 4 C -0.200 4.200 5 C -0.133 4.133 6 C -0.136 4.136 7 C -0.117 4.117 8 C 0.092 3.908 9 C -0.084 4.084 10 C -0.049 4.049 11 N -0.101 5.101 12 C 0.093 3.907 13 N -0.189 5.189 14 C -0.062 4.062 15 C -0.080 4.080 16 C -0.152 4.152 17 C -0.125 4.125 18 C -0.134 4.134 19 C -0.061 4.061 20 N -0.212 5.212 21 H 0.259 0.741 22 C 0.117 3.883 23 O -0.134 6.134 24 C -0.447 4.447 25 H 0.089 0.911 26 C -0.162 4.162 27 N -0.515 5.515 28 Si 0.755 3.245 29 H -0.206 1.206 30 H -0.206 1.206 31 H -0.195 1.195 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.195 0.805 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.138 0.862 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.097 13.119 -0.491 13.295 hybrid contribution 0.014 0.612 0.257 0.663 sum 2.111 13.731 -0.234 13.894 Atomic orbital electron populations 1.23023 0.79952 1.03605 1.00441 1.86365 1.19705 1.25608 1.88184 1.19724 0.92290 0.84702 0.98864 1.21264 0.99700 0.92114 1.06883 1.20576 0.94099 0.96671 1.01938 1.21209 0.93931 0.96718 1.01773 1.19212 0.92361 0.92874 1.07203 1.22943 0.92983 0.90261 0.84641 1.15140 0.85812 0.99111 1.08381 1.25311 0.93559 0.92973 0.93038 1.81249 1.07862 1.10203 1.10784 1.20778 0.91140 0.86024 0.92795 1.70777 0.99854 1.26018 1.22295 1.19087 0.92558 0.94419 1.00093 1.20138 0.89032 0.99846 0.98972 1.20623 0.97898 0.96428 1.00202 1.20852 0.96719 0.97037 0.97920 1.19922 0.89609 1.00687 1.03224 1.18894 0.85039 1.00078 1.02131 1.43120 1.06076 1.27775 1.44227 0.74058 1.18630 0.87134 0.88253 0.94246 1.83839 1.66557 1.33523 1.29432 1.20847 1.33840 1.08987 0.81072 0.91080 1.24975 0.97145 0.95830 0.98230 1.69999 1.36303 1.18883 1.26297 0.85912 0.78046 0.79251 0.81328 1.20573 1.20590 1.19537 0.93205 0.93307 0.88508 0.85575 0.86023 0.86171 0.80517 0.84953 0.85421 0.85489 0.86178 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.29 -5.77 10.28 -34.11 -0.35 -6.12 16 3 C 0.09 1.80 6.70 -39.11 -0.26 1.54 16 4 C -0.18 -2.85 9.03 -39.34 -0.36 -3.21 16 5 C -0.11 -1.72 10.01 -39.64 -0.40 -2.11 16 6 C -0.12 -1.92 8.26 -39.05 -0.32 -2.24 16 7 C -0.12 -2.20 5.54 -104.96 -0.58 -2.78 16 8 C 0.12 2.14 9.05 -36.86 -0.33 1.81 16 9 C -0.08 -1.26 5.80 -104.83 -0.61 -1.87 16 10 C 0.27 4.09 11.31 -22.46 -0.25 3.84 16 11 N -0.42 -6.76 18.07 41.85 0.76 -6.01 16 12 C 0.36 5.69 7.72 -154.46 -1.19 4.50 16 13 N -0.47 -8.38 10.79 -8.77 -0.09 -8.47 16 14 C 0.06 0.92 7.22 -84.72 -0.61 0.31 16 15 C -0.06 -0.80 10.05 -39.56 -0.40 -1.20 16 16 C -0.13 -1.36 9.96 -39.98 -0.40 -1.76 16 17 C -0.11 -1.01 10.03 -39.50 -0.40 -1.41 16 18 C -0.11 -1.22 10.07 -39.50 -0.40 -1.62 16 19 C 0.05 0.66 7.30 -83.89 -0.61 0.05 16 20 N -0.60 -7.97 6.13 -8.48 -0.05 -8.02 16 21 H 0.42 4.46 8.70 -40.82 -0.36 4.11 16 22 C 0.16 3.68 5.63 -38.31 -0.22 3.46 16 23 O -0.22 -5.99 8.89 -13.56 -0.12 -6.11 16 24 C -0.37 -10.14 9.57 30.91 0.30 -9.84 16 25 H 0.07 1.86 7.76 -52.49 -0.41 1.45 16 26 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 27 N -0.88 -25.98 13.67 55.48 0.76 -25.22 16 28 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 31 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 32 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 33 H 0.05 0.56 7.65 -51.93 -0.40 0.17 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.13 1.59 6.26 -52.49 -0.33 1.26 16 36 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 37 H 0.12 1.81 5.74 -52.49 -0.30 1.51 16 38 H 0.18 3.59 7.45 -52.49 -0.39 3.20 16 39 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -33.51 385.20 -8.72 -42.23 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.25 Total: 6.02 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -6.14 Total: -10.22 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 1.37 Total: -47.72 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.47 Total: -12.23 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.51 -8.72 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004855427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.051 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds