Wall clock time and date at job start Tue Mar 31 2020 05:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46955 * 110.99762 * 2 1 4 4 C 1.53050 * 109.36589 * 176.80968 * 3 2 1 5 5 N 1.46958 * 109.36107 * 58.40089 * 4 3 2 6 6 C 1.38094 * 110.99877 * 176.81162 * 5 4 3 7 7 C 1.39987 * 119.87415 * 63.80029 * 6 5 4 8 8 C 1.36102 * 120.13479 * 179.97438 * 7 6 5 9 9 C 1.41050 * 119.86366 * 359.97438 * 8 7 6 10 10 C 1.41357 * 120.12541 * 179.97438 * 9 8 7 11 11 N 1.31907 * 119.99870 * 0.02562 * 10 9 8 12 12 N 1.29000 * 119.99982 * 180.02562 * 11 10 9 13 13 C 1.34783 * 120.00113 * 179.97438 * 12 11 10 14 14 O 1.21879 * 119.99847 * 359.97438 * 13 12 11 15 15 C 1.46165 * 119.99798 * 179.97438 * 13 12 11 16 16 H 1.07997 * 120.00663 * 353.95092 * 15 13 12 17 17 C 1.40887 * 119.99606 * 173.94774 * 15 13 12 18 18 N 1.30218 * 120.00128 * 6.12494 * 17 15 13 19 19 Si 1.86806 * 120.00043 * 186.12782 * 17 15 13 20 20 H 1.48503 * 109.47121 * 94.98233 * 19 17 15 21 21 H 1.48497 * 109.46732 * 214.98473 * 19 17 15 22 22 H 1.48498 * 109.46955 * 334.98306 * 19 17 15 23 23 C 1.41022 * 119.74867 * 0.02562 * 9 8 7 24 24 C 1.36128 * 119.86891 * 359.73838 * 23 9 8 25 25 N 1.48011 * 119.93573 * 180.27340 * 24 23 9 26 26 O 1.31701 * 120.00107 * 0.24399 * 25 24 23 27 27 O 1.31705 * 120.00424 * 180.24220 * 25 24 23 28 28 C 1.46955 * 110.88169 * 300.67978 * 5 4 3 29 29 C 1.46958 * 111.00017 * 236.20039 * 2 1 3 30 30 H 1.09000 * 109.46797 * 183.79899 * 1 2 3 31 31 H 1.09003 * 109.47400 * 63.80546 * 1 2 3 32 32 H 1.08991 * 109.47629 * 303.79921 * 1 2 3 33 33 H 1.09007 * 109.48964 * 296.77946 * 3 2 1 34 34 H 1.08998 * 109.49321 * 56.84010 * 3 2 1 35 35 H 1.08993 * 109.48779 * 298.43782 * 4 3 2 36 36 H 1.09005 * 109.50661 * 178.37298 * 4 3 2 37 37 H 1.07999 * 119.93405 * 359.97438 * 7 6 5 38 38 H 1.07993 * 120.06647 * 180.02562 * 8 7 6 39 39 H 1.08006 * 120.00507 * 180.02562 * 10 9 8 40 40 H 0.96997 * 120.00270 * 359.97438 * 12 11 10 41 41 H 0.97005 * 120.00217 * 180.02562 * 18 17 15 42 42 H 1.08004 * 120.06423 * 179.97438 * 23 9 8 43 43 H 1.09003 * 109.48487 * 299.35335 * 28 5 4 44 44 H 1.08996 * 109.48821 * 179.29217 * 28 5 4 45 45 H 1.08992 * 109.48749 * 303.15131 * 29 2 1 46 46 H 1.08999 * 109.48835 * 63.20021 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 0.0804 5 7 4.0500 0.5660 -1.0597 6 6 5.4310 0.5660 -1.0597 7 6 6.1283 -0.0409 -0.0085 8 6 7.4893 -0.0443 -0.0034 9 6 8.1972 0.5647 -1.0605 10 6 9.6107 0.5648 -1.0605 11 7 10.2703 -0.0059 -0.0710 12 7 11.5603 -0.0054 -0.0707 13 6 12.2343 -0.5881 0.9407 14 8 11.6249 -1.1150 1.8552 15 6 13.6959 -0.5880 0.9406 16 1 14.2359 -0.2091 0.0855 17 6 14.4004 -1.0822 2.0561 18 7 13.7549 -1.6478 3.0355 19 14 16.2604 -0.9261 2.1303 20 1 16.6246 0.2979 2.8882 21 1 16.8303 -2.1171 2.8100 22 1 16.8048 -0.8351 0.7518 23 6 7.4893 1.1746 -2.1168 24 6 6.1281 1.1677 -2.1137 25 7 5.3837 1.8020 -3.2246 26 8 6.0383 2.3681 -4.2174 27 8 4.0666 1.8003 -3.2206 28 6 3.5235 -0.8060 -1.0597 29 6 1.9957 -0.7632 -1.1401 30 1 -0.3633 -1.0254 0.0681 31 1 -0.3634 0.4536 -0.9221 32 1 -0.3634 0.5716 0.8539 33 1 1.6937 1.8774 -0.9174 34 1 1.6012 1.9129 0.8602 35 1 3.8252 0.8480 1.0106 36 1 3.9180 2.3449 0.0514 37 1 5.5852 -0.5073 0.8001 38 1 8.0261 -0.5132 0.8079 39 1 10.1508 1.0321 -1.8708 40 1 12.0453 0.4143 -0.7984 41 1 14.2399 -1.9877 3.8037 42 1 8.0262 1.6428 -2.9286 43 1 3.8254 -1.3113 -0.1423 44 1 3.9179 -1.3469 -1.9199 45 1 1.6014 -1.7789 -1.1110 46 1 1.6935 -0.2823 -2.0704 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005393787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:29 Heat of formation + Delta-G solvation = 87.298664 kcal Electronic energy + Delta-G solvation = -31480.922053 eV Core-core repulsion = 26990.949770 eV Total energy + Delta-G solvation = -4489.972283 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.158 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.98853 -39.38150 -38.95739 -38.02650 -36.32209 -35.51645 -34.07490 -33.01380 -32.36815 -31.74930 -31.28570 -29.77376 -28.14967 -26.79427 -25.95948 -24.55176 -23.95811 -23.14701 -22.73825 -21.16244 -20.27442 -19.98199 -18.75615 -17.91213 -17.64234 -17.16916 -16.73761 -15.97476 -15.88032 -15.53106 -15.43567 -15.18502 -15.09060 -15.01399 -14.83434 -14.47150 -14.34272 -14.09238 -13.62513 -13.07143 -13.01849 -12.86938 -12.73025 -12.24977 -12.19072 -11.96727 -11.67494 -11.66469 -11.58124 -11.30744 -11.18165 -11.14433 -11.09678 -10.99234 -10.92154 -10.57311 -10.43142 -9.92589 -9.69713 -9.51397 -9.21372 -8.83536 -8.60843 -8.24436 -7.37794 -6.70278 -5.16841 -0.50762 0.48699 1.26587 1.30492 2.36320 2.90647 2.96924 3.01449 3.29304 3.50998 3.58013 3.60735 3.93090 4.18691 4.34009 4.47875 4.67332 4.68653 4.82097 4.85394 4.86006 4.95269 4.99100 5.06529 5.18725 5.21748 5.24447 5.27835 5.30736 5.45726 5.46223 5.54616 5.58400 5.59150 5.68930 5.73696 5.84635 5.97668 6.17771 6.34484 6.36029 6.47790 6.65630 6.72951 6.92846 6.97022 7.02495 7.22944 7.71303 8.39799 8.48706 8.83586 10.05514 10.22126 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.001882 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.152478 B =14874.803703 C =16188.435894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.058 3.942 4 C 0.066 3.934 5 N -0.494 5.494 6 C 0.133 3.867 7 C -0.140 4.140 8 C -0.048 4.048 9 C 0.020 3.980 10 C -0.072 4.072 11 N -0.149 5.149 12 N -0.507 5.507 13 C 0.535 3.465 14 O -0.531 6.531 15 C -0.530 4.530 16 H 0.080 0.920 17 C 0.086 3.914 18 N -0.746 5.746 19 Si 0.921 3.079 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.260 1.260 23 C -0.066 4.066 24 C 0.027 3.973 25 N -0.015 5.015 26 O -0.219 6.219 27 O -0.114 6.114 28 C 0.064 3.936 29 C 0.058 3.942 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.154 0.846 39 H 0.114 0.886 40 H 0.371 0.629 41 H 0.279 0.721 42 H 0.156 0.844 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.701 3.634 -6.146 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.070 4.070 4 C -0.060 4.060 5 N -0.216 5.216 6 C 0.034 3.966 7 C -0.160 4.160 8 C -0.070 4.070 9 C 0.017 3.983 10 C -0.269 4.269 11 N 0.026 4.974 12 N -0.253 5.253 13 C 0.343 3.657 14 O -0.408 6.408 15 C -0.566 4.566 16 H 0.098 0.902 17 C -0.138 4.138 18 N -0.373 5.373 19 Si 0.744 3.256 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.184 1.184 23 C -0.089 4.089 24 C -0.061 4.061 25 N 0.466 4.534 26 O -0.399 6.399 27 O -0.324 6.324 28 C -0.062 4.062 29 C -0.070 4.070 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.161 0.839 38 H 0.172 0.828 39 H 0.131 0.869 40 H 0.208 0.792 41 H 0.090 0.910 42 H 0.173 0.827 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.518 2.388 -3.976 19.090 hybrid contribution 1.191 0.952 -1.482 2.126 sum -17.328 3.340 -5.458 18.471 Atomic orbital electron populations 1.22330 0.86980 1.02240 1.00665 1.62180 1.08026 1.14012 1.42914 1.22152 0.93720 0.89455 1.01657 1.22235 0.94776 0.98379 0.90659 1.59304 1.02855 1.15201 1.44199 1.18563 0.89860 0.96128 0.92006 1.21513 0.95143 1.00903 0.98491 1.21731 0.93500 0.94130 0.97634 1.17510 0.92189 0.95822 0.92756 1.22338 0.92884 1.12022 0.99691 1.71575 0.97549 1.07365 1.20952 1.45723 1.00171 1.53344 1.26043 1.18756 0.88118 0.79101 0.79690 1.90720 1.69356 1.46042 1.34674 1.20971 0.87829 1.43721 1.04081 0.90212 1.25885 1.01034 0.92528 0.94396 1.69766 1.37935 1.23947 1.05606 0.86120 0.81066 0.78775 0.79630 1.19290 1.19920 1.18426 1.20870 0.90832 0.97949 0.99277 1.19867 0.90982 1.06254 0.88970 1.50317 1.03271 0.98023 1.01828 1.96264 1.69275 1.47982 1.26415 1.96273 0.88461 1.62404 1.85227 1.22251 0.94782 0.87455 1.01717 1.22148 0.93726 0.98644 0.92449 0.91351 0.95374 0.91368 0.93063 0.90049 0.93042 0.90122 0.83942 0.82803 0.86870 0.79157 0.90957 0.82677 0.93015 0.90079 0.90045 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.60 60.07 0.58 0.75 16 2 N -0.55 -4.62 4.97 -242.76 -1.21 -5.83 16 3 C 0.06 0.50 5.62 -3.77 -0.02 0.47 16 4 C 0.07 0.63 5.34 -3.77 -0.02 0.61 16 5 N -0.49 -5.39 2.42 -170.78 -0.41 -5.80 16 6 C 0.13 1.59 4.71 -83.75 -0.39 1.20 16 7 C -0.14 -1.58 8.53 -39.69 -0.34 -1.92 16 8 C -0.05 -0.64 9.50 -39.28 -0.37 -1.01 16 9 C 0.02 0.28 5.76 -106.59 -0.61 -0.34 16 10 C -0.07 -1.09 10.39 -16.33 -0.17 -1.26 16 11 N -0.15 -2.91 9.56 31.12 0.30 -2.61 16 12 N -0.51 -10.53 5.88 30.17 0.18 -10.35 16 13 C 0.53 13.91 7.82 -13.08 -0.10 13.81 16 14 O -0.53 -16.01 15.38 5.03 0.08 -15.94 16 15 C -0.53 -13.27 9.56 -35.40 -0.34 -13.61 16 16 H 0.08 1.77 7.87 -52.49 -0.41 1.36 16 17 C 0.09 2.13 5.51 -17.23 -0.09 2.03 16 18 N -0.75 -20.16 11.85 55.60 0.66 -19.50 16 19 Si 0.92 17.85 29.57 -169.99 -5.03 12.83 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 22 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 23 C -0.07 -0.84 9.27 -39.29 -0.36 -1.20 16 24 C 0.03 0.36 6.87 -80.07 -0.55 -0.19 16 25 N -0.02 -0.24 4.98 33.90 0.17 -0.07 16 26 O -0.22 -3.60 19.12 -31.57 -0.60 -4.20 16 27 O -0.11 -1.77 17.75 -31.57 -0.56 -2.33 16 28 C 0.06 0.61 5.29 -3.77 -0.02 0.59 16 29 C 0.06 0.50 5.62 -3.77 -0.02 0.47 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 35 H 0.05 0.48 7.39 -51.93 -0.38 0.10 16 36 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 37 H 0.14 1.36 7.00 -52.49 -0.37 0.99 16 38 H 0.15 2.27 7.47 -52.49 -0.39 1.87 16 39 H 0.11 1.42 7.95 -52.48 -0.42 1.00 16 40 H 0.37 6.30 8.43 -190.12 -1.60 4.70 16 41 H 0.28 6.74 8.28 -40.82 -0.34 6.41 16 42 H 0.16 1.78 7.54 -52.48 -0.40 1.39 16 43 H 0.05 0.48 7.19 -51.93 -0.37 0.10 16 44 H 0.08 0.79 8.13 -51.93 -0.42 0.36 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 394.54 15.07 5.95 5.95 Total: -1.00 -32.03 394.54 -10.61 -42.64 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.28 Total: 4.81 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.84 Total: 0.40 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.32 Total: -44.15 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -1.09 Total: -22.47 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.03 -10.61 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005393787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.937 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds