Wall clock time and date at job start Tue Mar 31 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46955 * 110.99762 * 2 1 4 4 C 1.53050 * 109.36589 * 176.80968 * 3 2 1 5 5 N 1.46958 * 109.36107 * 58.40089 * 4 3 2 6 6 C 1.38094 * 110.99877 * 176.81162 * 5 4 3 7 7 C 1.39987 * 119.87415 * 63.80029 * 6 5 4 8 8 C 1.36102 * 120.13479 * 179.97438 * 7 6 5 9 9 C 1.41050 * 119.86366 * 359.97438 * 8 7 6 10 10 C 1.41357 * 120.12541 * 179.97438 * 9 8 7 11 11 N 1.31907 * 119.99870 * 0.02562 * 10 9 8 12 12 N 1.29000 * 119.99982 * 180.02562 * 11 10 9 13 13 C 1.34783 * 120.00113 * 179.97438 * 12 11 10 14 14 O 1.21879 * 119.99847 * 359.97438 * 13 12 11 15 15 C 1.46165 * 119.99798 * 179.97438 * 13 12 11 16 16 H 1.07997 * 120.00663 * 353.95092 * 15 13 12 17 17 C 1.40887 * 119.99606 * 173.94774 * 15 13 12 18 18 N 1.30218 * 120.00128 * 6.12494 * 17 15 13 19 19 Si 1.86806 * 120.00043 * 186.12782 * 17 15 13 20 20 H 1.48503 * 109.47121 * 94.98233 * 19 17 15 21 21 H 1.48497 * 109.46732 * 214.98473 * 19 17 15 22 22 H 1.48498 * 109.46955 * 334.98306 * 19 17 15 23 23 C 1.41022 * 119.74867 * 0.02562 * 9 8 7 24 24 C 1.36128 * 119.86891 * 359.73838 * 23 9 8 25 25 N 1.48011 * 119.93573 * 180.27340 * 24 23 9 26 26 O 1.31701 * 120.00107 * 0.24399 * 25 24 23 27 27 O 1.31705 * 120.00424 * 180.24220 * 25 24 23 28 28 C 1.46955 * 110.88169 * 300.67978 * 5 4 3 29 29 C 1.46958 * 111.00017 * 236.20039 * 2 1 3 30 30 H 1.09000 * 109.46797 * 183.79899 * 1 2 3 31 31 H 1.09003 * 109.47400 * 63.80546 * 1 2 3 32 32 H 1.08991 * 109.47629 * 303.79921 * 1 2 3 33 33 H 1.09007 * 109.48964 * 296.77946 * 3 2 1 34 34 H 1.08998 * 109.49321 * 56.84010 * 3 2 1 35 35 H 1.08993 * 109.48779 * 298.43782 * 4 3 2 36 36 H 1.09005 * 109.50661 * 178.37298 * 4 3 2 37 37 H 1.07999 * 119.93405 * 359.97438 * 7 6 5 38 38 H 1.07993 * 120.06647 * 180.02562 * 8 7 6 39 39 H 1.08006 * 120.00507 * 180.02562 * 10 9 8 40 40 H 0.96997 * 120.00270 * 359.97438 * 12 11 10 41 41 H 0.97005 * 120.00217 * 180.02562 * 18 17 15 42 42 H 1.08004 * 120.06423 * 179.97438 * 23 9 8 43 43 H 1.09003 * 109.48487 * 299.35335 * 28 5 4 44 44 H 1.08996 * 109.48821 * 179.29217 * 28 5 4 45 45 H 1.08992 * 109.48749 * 303.15131 * 29 2 1 46 46 H 1.08999 * 109.48835 * 63.20021 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 0.0804 5 7 4.0500 0.5660 -1.0597 6 6 5.4310 0.5660 -1.0597 7 6 6.1283 -0.0409 -0.0085 8 6 7.4893 -0.0443 -0.0034 9 6 8.1972 0.5647 -1.0605 10 6 9.6107 0.5648 -1.0605 11 7 10.2703 -0.0059 -0.0710 12 7 11.5603 -0.0054 -0.0707 13 6 12.2343 -0.5881 0.9407 14 8 11.6249 -1.1150 1.8552 15 6 13.6959 -0.5880 0.9406 16 1 14.2359 -0.2091 0.0855 17 6 14.4004 -1.0822 2.0561 18 7 13.7549 -1.6478 3.0355 19 14 16.2604 -0.9261 2.1303 20 1 16.6246 0.2979 2.8882 21 1 16.8303 -2.1171 2.8100 22 1 16.8048 -0.8351 0.7518 23 6 7.4893 1.1746 -2.1168 24 6 6.1281 1.1677 -2.1137 25 7 5.3837 1.8020 -3.2246 26 8 6.0383 2.3681 -4.2174 27 8 4.0666 1.8003 -3.2206 28 6 3.5235 -0.8060 -1.0597 29 6 1.9957 -0.7632 -1.1401 30 1 -0.3633 -1.0254 0.0681 31 1 -0.3634 0.4536 -0.9221 32 1 -0.3634 0.5716 0.8539 33 1 1.6937 1.8774 -0.9174 34 1 1.6012 1.9129 0.8602 35 1 3.8252 0.8480 1.0106 36 1 3.9180 2.3449 0.0514 37 1 5.5852 -0.5073 0.8001 38 1 8.0261 -0.5132 0.8079 39 1 10.1508 1.0321 -1.8708 40 1 12.0453 0.4143 -0.7984 41 1 14.2399 -1.9877 3.8037 42 1 8.0262 1.6428 -2.9286 43 1 3.8254 -1.3113 -0.1423 44 1 3.9179 -1.3469 -1.9199 45 1 1.6014 -1.7789 -1.1110 46 1 1.6935 -0.2823 -2.0704 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005393787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:28 Heat of formation + Delta-G solvation = 65.680043 kcal Electronic energy + Delta-G solvation = -31481.859507 eV Core-core repulsion = 26990.949770 eV Total energy + Delta-G solvation = -4490.909737 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.158 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.00181 -40.80071 -39.97921 -39.21007 -37.74588 -36.66843 -35.28316 -34.86055 -33.64506 -32.87009 -32.00836 -31.01715 -29.21966 -28.33883 -27.14050 -25.52715 -24.68813 -24.21371 -23.74938 -22.51473 -21.81093 -20.76276 -20.16104 -19.14644 -18.90045 -18.31263 -17.99180 -17.69209 -17.06126 -16.51058 -16.21969 -16.20984 -16.01273 -15.97431 -15.89825 -15.76115 -15.66313 -15.18307 -14.81387 -14.43580 -14.26632 -13.74750 -13.54036 -13.36727 -13.35311 -13.04373 -12.94737 -12.87576 -12.78578 -12.66018 -12.33012 -12.30029 -12.12974 -12.05554 -11.96958 -11.91595 -11.68214 -11.21353 -11.08515 -10.83670 -10.62524 -10.20897 -9.67216 -9.29918 -8.81885 -8.52742 -7.09003 -1.69914 -0.64577 0.14865 0.15154 1.10962 1.39505 1.42783 1.57206 2.07678 2.24515 2.38856 2.40821 2.50946 2.97557 3.30622 3.41897 3.54563 3.63340 3.75681 3.78857 3.92583 4.01270 4.15967 4.22934 4.26640 4.28066 4.42620 4.46464 4.51841 4.64687 4.67960 4.69126 4.74724 4.78876 4.89423 4.93987 5.01172 5.04497 5.07795 5.15002 5.19907 5.26222 5.53603 5.69161 5.76086 5.93352 5.94241 6.05749 6.12583 6.61858 6.72467 7.34710 8.29942 8.44098 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.001882 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.152478 B =14874.803703 C =16188.435894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.063 3.937 4 C 0.065 3.935 5 N -0.507 5.507 6 C 0.159 3.841 7 C -0.132 4.132 8 C -0.037 4.037 9 C -0.009 4.009 10 C -0.014 4.014 11 N -0.219 5.219 12 N -0.521 5.521 13 C 0.529 3.471 14 O -0.591 6.591 15 C -0.556 4.556 16 H 0.103 0.897 17 C 0.032 3.968 18 N -0.802 5.802 19 Si 1.006 2.994 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.244 1.244 23 C -0.038 4.038 24 C 0.007 3.993 25 N -0.012 5.012 26 O -0.247 6.247 27 O -0.115 6.115 28 C 0.063 3.937 29 C 0.063 3.937 30 H 0.076 0.924 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.165 0.835 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.387 0.613 41 H 0.284 0.716 42 H 0.171 0.829 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.543 4.275 -7.089 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.278 5.278 3 C -0.066 4.066 4 C -0.061 4.061 5 N -0.229 5.229 6 C 0.060 3.940 7 C -0.153 4.153 8 C -0.059 4.059 9 C -0.012 4.012 10 C -0.215 4.215 11 N -0.038 5.038 12 N -0.266 5.266 13 C 0.338 3.662 14 O -0.474 6.474 15 C -0.592 4.592 16 H 0.121 0.879 17 C -0.187 4.187 18 N -0.430 5.430 19 Si 0.824 3.176 20 H -0.186 1.186 21 H -0.195 1.195 22 H -0.167 1.167 23 C -0.061 4.061 24 C -0.081 4.081 25 N 0.466 4.534 26 O -0.421 6.421 27 O -0.326 6.326 28 C -0.062 4.062 29 C -0.066 4.066 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.183 0.817 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.226 0.774 41 H 0.095 0.905 42 H 0.189 0.811 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.115 0.885 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -19.359 3.069 -4.994 20.227 hybrid contribution 0.958 0.830 -1.342 1.847 sum -18.401 3.899 -6.337 19.848 Atomic orbital electron populations 1.22374 0.85775 1.03007 1.00982 1.62222 1.09170 1.13769 1.42678 1.22125 0.92905 0.89738 1.01794 1.22293 0.95564 0.97985 0.90218 1.59398 1.01996 1.16328 1.45166 1.18752 0.90692 0.93623 0.90924 1.21637 0.94285 1.00539 0.98831 1.21720 0.94279 0.93065 0.96871 1.17474 0.91628 0.98188 0.93906 1.22899 0.93500 1.06854 0.98201 1.71579 0.97114 1.11474 1.23636 1.44753 1.00704 1.55166 1.25960 1.19006 0.88887 0.78460 0.79837 1.90653 1.70638 1.48812 1.37306 1.21531 0.88145 1.44178 1.05337 0.87852 1.27171 1.06843 0.91225 0.93480 1.69923 1.40629 1.25672 1.06778 0.84867 0.73521 0.78813 0.80373 1.18586 1.19534 1.16671 1.20943 0.90596 0.95902 0.98668 1.20072 0.91365 1.07448 0.89181 1.50473 1.03249 0.97708 1.01942 1.96266 1.69216 1.49318 1.27324 1.96267 0.88801 1.62311 1.85250 1.22316 0.95554 0.86459 1.01920 1.22123 0.92931 0.99469 0.92033 0.90485 0.95517 0.90496 0.94231 0.88478 0.92381 0.90468 0.81739 0.84410 0.83824 0.77376 0.90505 0.81112 0.92319 0.90356 0.88472 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.60 127.69 1.23 1.51 16 2 N -0.55 -8.05 4.97 -921.95 -4.58 -12.63 16 3 C 0.06 0.93 5.62 86.31 0.49 1.42 16 4 C 0.06 1.10 5.34 86.31 0.46 1.56 16 5 N -0.51 -9.99 2.42 -694.22 -1.68 -11.67 16 6 C 0.16 3.45 4.71 39.00 0.18 3.64 16 7 C -0.13 -2.71 8.53 22.20 0.19 -2.52 16 8 C -0.04 -0.95 9.50 22.46 0.21 -0.73 16 9 C -0.01 -0.23 5.76 -21.14 -0.12 -0.35 16 10 C -0.01 -0.39 10.39 85.45 0.89 0.49 16 11 N -0.22 -8.65 9.56 -55.46 -0.53 -9.18 16 12 N -0.52 -22.19 5.88 -176.61 -1.04 -23.23 16 13 C 0.53 28.75 7.82 86.30 0.67 29.42 16 14 O -0.59 -37.82 15.38 -4.92 -0.08 -37.89 16 15 C -0.56 -28.52 9.56 24.98 0.24 -28.28 16 16 H 0.10 4.57 7.87 -2.91 -0.02 4.55 16 17 C 0.03 1.60 5.51 85.58 0.47 2.07 16 18 N -0.80 -45.24 11.85 21.98 0.26 -44.98 16 19 Si 1.01 36.60 29.57 68.60 2.03 38.63 16 20 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 21 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.24 -8.11 7.11 99.48 0.71 -7.40 16 23 C -0.04 -0.87 9.27 22.46 0.21 -0.67 16 24 C 0.01 0.18 6.87 36.30 0.25 0.42 16 25 N -0.01 -0.35 4.98 -46.65 -0.23 -0.58 16 26 O -0.25 -7.79 19.12 3.51 0.07 -7.72 16 27 O -0.11 -3.39 17.75 3.51 0.06 -3.33 16 28 C 0.06 1.06 5.29 86.31 0.46 1.52 16 29 C 0.06 0.93 5.62 86.31 0.49 1.41 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.08 0.71 8.13 -2.39 -0.02 0.69 16 33 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.10 1.15 8.13 -2.39 -0.02 1.13 16 35 H 0.06 0.92 7.39 -2.39 -0.02 0.91 16 36 H 0.08 1.36 8.13 -2.38 -0.02 1.34 16 37 H 0.17 2.69 7.00 -2.91 -0.02 2.67 16 38 H 0.14 4.11 7.47 -2.91 -0.02 4.08 16 39 H 0.14 3.19 7.95 -2.91 -0.02 3.17 16 40 H 0.39 13.23 8.43 -219.72 -1.85 11.37 16 41 H 0.28 14.34 8.28 -92.70 -0.77 13.57 16 42 H 0.17 3.42 7.54 -2.91 -0.02 3.40 16 43 H 0.06 0.92 7.19 -2.39 -0.02 0.90 16 44 H 0.08 1.36 8.13 -2.39 -0.02 1.34 16 45 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -73.56 394.54 -0.23 -73.79 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -0.82 Total: 27.87 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.31 Total: 10.93 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -7.80 Total: -102.28 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: 0.05 Total: -48.94 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -73.56 -0.23 -73.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005393787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.471 kcal (2) G-P(sol) polarization free energy of solvation -73.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds