Wall clock time and date at job start Tue Mar 31 2020 05:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38283 * 119.96589 * 2 1 4 4 C 1.38280 * 120.14149 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.96797 * 179.97438 * 4 3 2 6 6 C 1.38112 * 120.06820 * 359.96287 * 4 3 2 7 7 C 1.38863 * 119.93342 * 0.02562 * 6 4 3 8 8 N 1.39932 * 120.07566 * 180.02562 * 7 6 4 9 9 C 1.46495 * 119.99664 * 292.74343 * 8 7 6 10 10 C 1.50702 * 109.47239 * 269.99389 * 9 8 7 11 11 H 1.07997 * 120.00055 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00181 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00125 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99899 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47232 * 90.00320 * 14 12 10 16 16 H 1.48494 * 109.47060 * 210.00254 * 14 12 10 17 17 H 1.48497 * 109.47111 * 330.00042 * 14 12 10 18 18 C 1.34778 * 120.00152 * 112.74172 * 8 7 6 19 19 O 1.21287 * 119.99576 * 185.22396 * 18 8 7 20 20 C 1.50699 * 119.99736 * 5.21616 * 18 8 7 21 21 S 1.81406 * 109.46737 * 185.39053 * 20 18 8 22 22 C 1.76202 * 102.99833 * 180.02562 * 21 20 18 23 23 N 1.31149 * 125.53389 * 0.02562 * 22 21 20 24 24 N 1.40413 * 106.94995 * 179.78271 * 23 22 21 25 25 H 0.97002 * 126.76106 * 180.24762 * 24 23 22 26 26 C 1.34937 * 106.46808 * 0.34902 * 24 23 22 27 27 N 1.38291 * 125.99714 * 179.91583 * 26 24 23 28 28 N 1.31602 * 107.99902 * 359.65026 * 26 24 23 29 29 C 1.38115 * 119.96224 * 180.23667 * 2 1 3 30 30 H 1.09003 * 109.46996 * 89.99431 * 1 2 3 31 31 H 1.09000 * 109.47103 * 209.99781 * 1 2 3 32 32 H 1.08998 * 109.46754 * 329.99998 * 1 2 3 33 33 H 1.07995 * 119.92962 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.47505 * 269.98713 * 5 4 3 35 35 H 1.09000 * 109.46745 * 29.98282 * 5 4 3 36 36 H 1.08999 * 109.47132 * 149.97941 * 5 4 3 37 37 H 1.08007 * 120.03219 * 179.97438 * 6 4 3 38 38 H 1.08996 * 109.47633 * 29.99447 * 9 8 7 39 39 H 1.09002 * 109.47317 * 149.99837 * 9 8 7 40 40 H 0.97000 * 120.00481 * 179.97438 * 13 12 10 41 41 H 1.08997 * 109.46744 * 65.39549 * 20 18 8 42 42 H 1.08990 * 109.47657 * 305.38976 * 20 18 8 43 43 H 0.97000 * 120.00084 * 179.71696 * 27 26 24 44 44 H 0.96997 * 120.00303 * 359.43562 * 27 26 24 45 45 H 1.07998 * 120.03701 * 0.04474 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5805 1.2022 0.0005 5 6 4.3293 2.5100 -0.0001 6 6 4.2761 0.0091 0.0018 7 6 3.5856 -1.1956 0.0021 8 7 4.2874 -2.4063 0.0040 9 6 5.0804 -2.7949 -1.1649 10 6 4.2194 -3.5860 -2.1157 11 1 3.1848 -3.7795 -1.8737 12 6 4.7522 -4.0618 -3.2950 13 7 6.0118 -3.8258 -3.5899 14 14 3.6846 -5.0417 -4.4738 15 1 3.0285 -4.1170 -5.4328 16 1 4.5294 -6.0095 -5.2186 17 1 2.6474 -5.7776 -3.7072 18 6 4.2337 -3.2146 1.0810 19 8 4.9157 -4.2168 1.1216 20 6 3.3266 -2.8732 2.2350 21 16 3.5950 -4.0546 3.5851 22 6 2.4671 -3.5053 4.8224 23 7 1.6591 -2.4779 4.7153 24 7 0.9378 -2.3972 5.9173 25 1 0.2584 -1.7430 6.1438 26 6 1.3777 -3.4077 6.6959 27 7 0.9367 -3.7006 7.9734 28 7 2.2959 -4.0688 6.0239 29 6 2.1968 -1.1966 -0.0049 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6560 2.1323 -0.0004 34 1 4.5104 2.8246 -1.0278 35 1 3.7370 3.2679 0.5128 36 1 5.2818 2.3836 0.5146 37 1 5.3562 0.0131 0.0018 38 1 5.4495 -1.9008 -1.6672 39 1 5.9241 -3.4062 -0.8446 40 1 6.3868 -4.1608 -4.4194 41 1 2.2880 -2.9247 1.9081 42 1 3.5477 -1.8650 2.5851 43 1 1.3122 -4.4541 8.4553 44 1 0.2548 -3.1503 8.3893 45 1 1.6568 -2.1318 -0.0095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005472725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:12 Heat of formation + Delta-G solvation = 82.861123 kcal Electronic energy + Delta-G solvation = -29379.061300 eV Core-core repulsion = 25331.649462 eV Total energy + Delta-G solvation = -4047.411838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.98424 -40.05684 -38.44332 -35.24733 -35.18457 -33.38588 -32.81645 -32.54721 -30.42270 -30.20963 -29.50813 -27.19844 -26.71934 -26.48224 -23.31847 -22.88323 -22.34716 -21.79123 -20.50803 -19.16775 -18.56061 -17.12567 -16.67611 -16.59614 -16.33643 -16.19091 -15.97226 -15.87290 -15.49020 -15.34614 -14.62997 -14.18459 -13.82471 -13.76106 -13.44193 -13.12137 -12.96000 -12.77614 -12.70453 -12.44008 -12.20254 -12.09028 -11.90580 -11.73075 -11.49527 -11.36409 -11.17104 -10.98247 -10.83130 -10.65008 -10.62492 -10.51794 -10.18419 -9.97001 -9.75113 -9.46115 -8.84440 -8.55665 -8.44482 -8.32066 -7.72707 -7.52843 -6.06614 -4.11323 1.16333 1.55713 1.57842 1.60772 1.97969 2.45333 2.78870 3.11628 3.31037 3.37417 3.41885 3.50287 3.72328 3.93681 4.43865 4.60265 4.77750 4.91927 5.00794 5.23225 5.28782 5.35549 5.40835 5.44384 5.51126 5.60949 5.64624 5.66556 5.72482 5.76600 5.93300 5.94080 5.96453 6.19369 6.29449 6.35100 6.66593 6.75404 6.82403 6.82981 6.94024 7.17758 7.20224 7.32306 7.42654 7.88380 7.96687 8.16105 8.22061 8.71920 8.93024 9.53223 11.01816 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.008284 B = 0.003322 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3379.274707 B = 8427.221849 C =10306.653081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 C -0.132 4.132 4 C -0.074 4.074 5 C -0.111 4.111 6 C -0.127 4.127 7 C 0.167 3.833 8 N -0.552 5.552 9 C 0.248 3.752 10 C -0.528 4.528 11 H 0.059 0.941 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.899 3.101 15 H -0.280 1.280 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.536 3.464 19 O -0.511 6.511 20 C -0.152 4.152 21 S 0.101 5.899 22 C 0.224 3.776 23 N -0.327 5.327 24 N -0.514 5.514 25 H 0.435 0.565 26 C 0.539 3.461 27 N -0.826 5.826 28 N -0.558 5.558 29 C -0.127 4.127 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.125 0.875 38 H 0.038 0.962 39 H 0.052 0.948 40 H 0.264 0.736 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.425 0.575 44 H 0.412 0.588 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.388 10.732 19.097 25.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.073 4.073 3 C -0.150 4.150 4 C -0.075 4.075 5 C -0.168 4.168 6 C -0.147 4.147 7 C 0.075 3.925 8 N -0.280 5.280 9 C 0.131 3.869 10 C -0.567 4.567 11 H 0.077 0.923 12 C -0.138 4.138 13 N -0.532 5.532 14 Si 0.726 3.274 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.198 1.198 18 C 0.321 3.679 19 O -0.387 6.387 20 C -0.304 4.304 21 S 0.327 5.673 22 C -0.166 4.166 23 N -0.163 5.163 24 N -0.238 5.238 25 H 0.280 0.720 26 C 0.169 3.831 27 N -0.383 5.383 28 N -0.299 5.299 29 C -0.147 4.147 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.143 0.857 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.258 0.742 44 H 0.242 0.758 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.905 9.369 18.386 23.340 hybrid contribution -2.303 0.967 -0.098 2.500 sum -13.209 10.336 18.288 24.814 Atomic orbital electron populations 1.20754 0.91365 1.02367 1.02256 1.19672 0.95740 0.92627 0.99287 1.20781 0.93370 0.97196 1.03688 1.19678 0.93644 0.94747 0.99382 1.20759 0.99812 0.93871 1.02329 1.21123 1.00203 0.90970 1.02401 1.17659 0.90511 0.86036 0.98288 1.45838 1.48378 1.16863 1.16961 1.19507 0.91140 0.96455 0.79809 1.21355 0.97434 1.34420 1.03469 0.92302 1.24895 0.95088 0.96042 0.97822 1.69920 1.12586 1.45882 1.24769 0.86482 0.80290 0.79874 0.80751 1.20634 1.21003 1.19762 1.19284 0.82641 0.83626 0.82362 1.90737 1.42851 1.25409 1.79656 1.23915 1.05415 1.03872 0.97182 1.86446 1.41791 1.35954 1.03152 1.26316 0.99648 0.93422 0.97252 1.78445 1.13421 1.22665 1.01722 1.47522 1.36457 1.27407 1.12459 0.72029 1.20380 0.89934 0.85988 0.86834 1.40988 1.47607 1.38034 1.11669 1.70769 1.22064 1.31597 1.05459 1.21190 0.93204 0.97984 1.02311 0.91196 0.91677 0.91848 0.86456 0.91146 0.91836 0.91588 0.85707 0.94432 0.93009 0.92611 0.86386 0.86787 0.74230 0.75814 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 36.01 0.36 -0.85 16 2 C -0.07 -1.02 5.88 -104.65 -0.62 -1.63 16 3 C -0.13 -1.73 9.35 -39.55 -0.37 -2.10 16 4 C -0.07 -1.03 5.88 -104.65 -0.62 -1.64 16 5 C -0.11 -1.18 10.01 36.00 0.36 -0.82 16 6 C -0.13 -2.11 9.31 -39.40 -0.37 -2.48 16 7 C 0.17 3.09 4.43 -83.69 -0.37 2.72 16 8 N -0.55 -12.00 2.51 -114.74 -0.29 -12.29 16 9 C 0.25 6.49 5.15 -5.20 -0.03 6.46 16 10 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 11 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 12 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 13 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 14 Si 0.90 21.99 29.54 -169.99 -5.02 16.96 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.54 11.38 7.59 -10.99 -0.08 11.30 16 19 O -0.51 -12.66 15.43 5.55 0.09 -12.57 16 20 C -0.15 -2.57 4.55 36.01 0.16 -2.41 16 21 S 0.10 1.71 21.31 -107.50 -2.29 -0.58 16 22 C 0.22 3.53 8.27 -90.95 -0.75 2.78 16 23 N -0.33 -4.69 12.33 30.13 0.37 -4.31 16 24 N -0.51 -5.22 7.46 30.02 0.22 -5.00 16 25 H 0.43 2.66 8.96 -182.36 -1.63 1.03 16 26 C 0.54 5.63 9.48 -320.89 -3.04 2.59 16 27 N -0.83 -4.17 9.06 30.03 0.27 -3.90 16 28 N -0.56 -8.12 11.25 -14.19 -0.16 -8.28 16 29 C -0.13 -2.12 8.11 -39.39 -0.32 -2.44 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 37 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 38 H 0.04 1.00 7.84 -51.93 -0.41 0.60 16 39 H 0.05 1.50 7.36 -51.93 -0.38 1.12 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.12 1.89 6.91 -51.93 -0.36 1.53 16 42 H 0.11 1.79 7.86 -51.93 -0.41 1.38 16 43 H 0.42 1.74 8.95 -40.82 -0.37 1.38 16 44 H 0.41 0.64 8.95 -40.82 -0.37 0.27 16 45 H 0.12 2.05 7.55 -52.49 -0.40 1.65 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -36.24 401.61 -13.35 -49.59 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.23 Total: 2.09 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -6.10 Total: -2.05 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 1.16 Total: -59.48 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.29 Total: -0.58 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.24 -13.35 -49.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005472725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.450 kcal (2) G-P(sol) polarization free energy of solvation -36.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds