Wall clock time and date at job start Tue Mar 31 2020 05:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38283 * 119.96589 * 2 1 4 4 C 1.38280 * 120.14149 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.96797 * 179.97438 * 4 3 2 6 6 C 1.38112 * 120.06820 * 359.96287 * 4 3 2 7 7 C 1.38863 * 119.93342 * 0.02562 * 6 4 3 8 8 N 1.39932 * 120.07566 * 180.02562 * 7 6 4 9 9 C 1.46495 * 119.99664 * 292.74343 * 8 7 6 10 10 C 1.50702 * 109.47239 * 269.99389 * 9 8 7 11 11 H 1.07997 * 120.00055 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00181 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00125 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99899 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47232 * 90.00320 * 14 12 10 16 16 H 1.48494 * 109.47060 * 210.00254 * 14 12 10 17 17 H 1.48497 * 109.47111 * 330.00042 * 14 12 10 18 18 C 1.34778 * 120.00152 * 112.74172 * 8 7 6 19 19 O 1.21287 * 119.99576 * 185.22396 * 18 8 7 20 20 C 1.50699 * 119.99736 * 5.21616 * 18 8 7 21 21 S 1.81406 * 109.46737 * 185.39053 * 20 18 8 22 22 C 1.76202 * 102.99833 * 180.02562 * 21 20 18 23 23 N 1.31149 * 125.53389 * 0.02562 * 22 21 20 24 24 N 1.40413 * 106.94995 * 179.78271 * 23 22 21 25 25 H 0.97002 * 126.76106 * 180.24762 * 24 23 22 26 26 C 1.34937 * 106.46808 * 0.34902 * 24 23 22 27 27 N 1.38291 * 125.99714 * 179.91583 * 26 24 23 28 28 N 1.31602 * 107.99902 * 359.65026 * 26 24 23 29 29 C 1.38115 * 119.96224 * 180.23667 * 2 1 3 30 30 H 1.09003 * 109.46996 * 89.99431 * 1 2 3 31 31 H 1.09000 * 109.47103 * 209.99781 * 1 2 3 32 32 H 1.08998 * 109.46754 * 329.99998 * 1 2 3 33 33 H 1.07995 * 119.92962 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.47505 * 269.98713 * 5 4 3 35 35 H 1.09000 * 109.46745 * 29.98282 * 5 4 3 36 36 H 1.08999 * 109.47132 * 149.97941 * 5 4 3 37 37 H 1.08007 * 120.03219 * 179.97438 * 6 4 3 38 38 H 1.08996 * 109.47633 * 29.99447 * 9 8 7 39 39 H 1.09002 * 109.47317 * 149.99837 * 9 8 7 40 40 H 0.97000 * 120.00481 * 179.97438 * 13 12 10 41 41 H 1.08997 * 109.46744 * 65.39549 * 20 18 8 42 42 H 1.08990 * 109.47657 * 305.38976 * 20 18 8 43 43 H 0.97000 * 120.00084 * 179.71696 * 27 26 24 44 44 H 0.96997 * 120.00303 * 359.43562 * 27 26 24 45 45 H 1.07998 * 120.03701 * 0.04474 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5805 1.2022 0.0005 5 6 4.3293 2.5100 -0.0001 6 6 4.2761 0.0091 0.0018 7 6 3.5856 -1.1956 0.0021 8 7 4.2874 -2.4063 0.0040 9 6 5.0804 -2.7949 -1.1649 10 6 4.2194 -3.5860 -2.1157 11 1 3.1848 -3.7795 -1.8737 12 6 4.7522 -4.0618 -3.2950 13 7 6.0118 -3.8258 -3.5899 14 14 3.6846 -5.0417 -4.4738 15 1 3.0285 -4.1170 -5.4328 16 1 4.5294 -6.0095 -5.2186 17 1 2.6474 -5.7776 -3.7072 18 6 4.2337 -3.2146 1.0810 19 8 4.9157 -4.2168 1.1216 20 6 3.3266 -2.8732 2.2350 21 16 3.5950 -4.0546 3.5851 22 6 2.4671 -3.5053 4.8224 23 7 1.6591 -2.4779 4.7153 24 7 0.9378 -2.3972 5.9173 25 1 0.2584 -1.7430 6.1438 26 6 1.3777 -3.4077 6.6959 27 7 0.9367 -3.7006 7.9734 28 7 2.2959 -4.0688 6.0239 29 6 2.1968 -1.1966 -0.0049 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6560 2.1323 -0.0004 34 1 4.5104 2.8246 -1.0278 35 1 3.7370 3.2679 0.5128 36 1 5.2818 2.3836 0.5146 37 1 5.3562 0.0131 0.0018 38 1 5.4495 -1.9008 -1.6672 39 1 5.9241 -3.4062 -0.8446 40 1 6.3868 -4.1608 -4.4194 41 1 2.2880 -2.9247 1.9081 42 1 3.5477 -1.8650 2.5851 43 1 1.3122 -4.4541 8.4553 44 1 0.2548 -3.1503 8.3893 45 1 1.6568 -2.1318 -0.0095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005472725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:11 Heat of formation + Delta-G solvation = 61.007431 kcal Electronic energy + Delta-G solvation = -29380.008947 eV Core-core repulsion = 25331.649462 eV Total energy + Delta-G solvation = -4048.359485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.131 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.93700 -41.55458 -39.88105 -36.87532 -35.91378 -34.92602 -34.41692 -33.50010 -31.97562 -31.49370 -30.59266 -28.80756 -28.02004 -27.57752 -24.96322 -24.30806 -23.72181 -22.72694 -21.61690 -20.36267 -19.75771 -18.72124 -18.27697 -17.95190 -17.44209 -17.26014 -17.18716 -16.99595 -16.76749 -16.75918 -16.20014 -15.87535 -15.17113 -14.81541 -14.66526 -14.59614 -14.33165 -14.01553 -13.92592 -13.75413 -13.46291 -13.27612 -13.18103 -13.08078 -12.82023 -12.67488 -12.61289 -12.48556 -12.41748 -12.10055 -12.04388 -11.78275 -11.73816 -11.57522 -11.16147 -11.05956 -10.67040 -10.11436 -9.66722 -9.48183 -9.24945 -8.78970 -8.25646 -6.40258 -0.11050 0.31419 0.42850 0.60275 0.90621 1.34619 1.38100 1.44123 1.50165 1.52516 1.80116 2.07954 2.37842 2.73706 2.87226 3.04589 3.29636 3.70714 3.81639 3.92793 3.95543 4.13409 4.21476 4.42232 4.46550 4.48718 4.70782 4.72588 4.86703 4.86893 4.90711 4.93745 5.04909 5.07490 5.10281 5.17159 5.34589 5.40186 5.56336 5.62056 5.65198 5.69094 5.72232 5.98041 6.05061 6.22431 6.51509 6.58375 6.66233 7.06629 7.16360 7.30359 8.82132 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.008284 B = 0.003322 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3379.274707 B = 8427.221849 C =10306.653081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.068 4.068 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.110 4.110 6 C -0.146 4.146 7 C 0.133 3.867 8 N -0.553 5.553 9 C 0.267 3.733 10 C -0.544 4.544 11 H 0.053 0.947 12 C 0.012 3.988 13 N -0.925 5.925 14 Si 0.967 3.033 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.271 1.271 18 C 0.529 3.471 19 O -0.558 6.558 20 C -0.123 4.123 21 S 0.066 5.934 22 C 0.215 3.785 23 N -0.340 5.340 24 N -0.499 5.499 25 H 0.454 0.546 26 C 0.545 3.455 27 N -0.796 5.796 28 N -0.593 5.593 29 C -0.141 4.141 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.024 0.976 39 H 0.011 0.989 40 H 0.269 0.731 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.433 0.567 44 H 0.431 0.569 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.927 13.167 20.302 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.069 4.069 3 C -0.140 4.140 4 C -0.070 4.070 5 C -0.166 4.166 6 C -0.166 4.166 7 C 0.042 3.958 8 N -0.280 5.280 9 C 0.147 3.853 10 C -0.582 4.582 11 H 0.072 0.928 12 C -0.187 4.187 13 N -0.565 5.565 14 Si 0.791 3.209 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.196 1.196 18 C 0.316 3.684 19 O -0.437 6.437 20 C -0.275 4.275 21 S 0.292 5.708 22 C -0.177 4.177 23 N -0.177 5.177 24 N -0.227 5.227 25 H 0.303 0.697 26 C 0.175 3.825 27 N -0.357 5.357 28 N -0.336 5.336 29 C -0.160 4.160 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.174 0.826 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.131 0.869 38 H 0.042 0.958 39 H 0.030 0.970 40 H 0.078 0.922 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.267 0.733 44 H 0.266 0.734 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.515 11.869 19.658 27.166 hybrid contribution -1.277 0.327 -0.317 1.356 sum -15.792 12.196 19.342 27.789 Atomic orbital electron populations 1.20823 0.88765 1.03851 1.03094 1.20063 0.97565 0.91785 0.97488 1.21243 0.93039 0.98381 1.01369 1.20069 0.94461 0.94917 0.97598 1.20834 1.00016 0.92612 1.03158 1.21196 0.99949 0.91678 1.03776 1.17910 0.91373 0.84999 1.01475 1.45634 1.48140 1.18378 1.15850 1.18919 0.90446 0.94886 0.81039 1.21591 0.97361 1.35010 1.04283 0.92842 1.25810 0.96433 0.96929 0.99550 1.70037 1.14207 1.46744 1.25466 0.85421 0.78489 0.78516 0.78480 1.18996 1.20293 1.19569 1.19965 0.82497 0.82815 0.83111 1.90698 1.44850 1.27412 1.80729 1.23573 1.04357 1.04190 0.95342 1.86496 1.43388 1.36700 1.04187 1.25875 1.00058 0.94342 0.97393 1.78311 1.13480 1.22178 1.03737 1.47303 1.36384 1.27803 1.11194 0.69696 1.20504 0.88868 0.85226 0.87951 1.41046 1.47116 1.38102 1.09405 1.70650 1.24160 1.33225 1.05572 1.21198 0.92301 0.99024 1.03511 0.90524 0.91562 0.89081 0.82574 0.90493 0.89039 0.91475 0.86850 0.95812 0.97047 0.92235 0.85405 0.85550 0.73303 0.73432 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 10.01 71.24 0.71 -1.29 16 2 C -0.07 -1.76 5.88 -19.88 -0.12 -1.87 16 3 C -0.12 -2.80 9.35 22.29 0.21 -2.59 16 4 C -0.07 -1.82 5.88 -19.88 -0.12 -1.93 16 5 C -0.11 -2.05 10.01 71.24 0.71 -1.33 16 6 C -0.15 -4.98 9.31 22.39 0.21 -4.77 16 7 C 0.13 5.12 4.43 38.15 0.17 5.29 16 8 N -0.55 -25.74 2.51 -635.31 -1.59 -27.34 16 9 C 0.27 15.01 5.15 85.63 0.44 15.45 16 10 C -0.54 -32.27 9.39 25.60 0.24 -32.03 16 11 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 12 C 0.01 0.72 5.46 84.66 0.46 1.18 16 13 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 14 Si 0.97 45.84 29.54 68.60 2.03 47.86 16 15 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 18 C 0.53 24.11 7.59 87.66 0.67 24.77 16 19 O -0.56 -29.91 15.43 -3.05 -0.05 -29.95 16 20 C -0.12 -4.36 4.55 71.24 0.32 -4.03 16 21 S 0.07 2.36 21.31 -56.49 -1.20 1.16 16 22 C 0.22 6.77 8.27 180.46 1.49 8.26 16 23 N -0.34 -9.39 12.33 -58.57 -0.72 -10.11 16 24 N -0.50 -9.00 7.46 -58.93 -0.44 -9.44 16 25 H 0.45 4.16 8.96 -213.11 -1.91 2.25 16 26 C 0.54 10.25 9.48 260.82 2.47 12.72 16 27 N -0.80 -5.67 9.06 -58.91 -0.53 -6.20 16 28 N -0.59 -16.88 11.25 -198.81 -2.24 -19.12 16 29 C -0.14 -4.70 8.11 22.39 0.18 -4.52 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 32 H 0.09 1.20 8.08 -2.39 -0.02 1.18 16 33 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 36 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 37 H 0.11 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.02 1.38 7.84 -2.39 -0.02 1.36 16 39 H 0.01 0.72 7.36 -2.39 -0.02 0.71 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 41 H 0.13 4.23 6.91 -2.39 -0.02 4.22 16 42 H 0.13 4.11 7.86 -2.40 -0.02 4.09 16 43 H 0.43 2.35 8.95 -92.71 -0.83 1.52 16 44 H 0.43 -0.27 8.95 -92.71 -0.83 -1.10 16 45 H 0.11 3.88 7.55 -2.91 -0.02 3.86 16 Total: -1.00 -84.08 401.61 1.09 -82.99 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -2.50 Total: 13.29 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 8.06 Total: 13.30 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -5.24 Total: -128.65 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.05 Total: -29.95 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.20 Total: 1.16 kcal Total: -84.08 1.09 -82.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005472725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.993 kcal (2) G-P(sol) polarization free energy of solvation -84.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds