Wall clock time and date at job start Tue Mar 31 2020 05:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99514 * 2 1 4 4 H 1.48503 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47421 * 299.99984 * 3 2 1 6 6 H 1.48503 * 109.47075 * 60.00007 * 3 2 1 7 7 C 1.37866 * 120.00681 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00575 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99974 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00466 * 269.99941 * 10 9 7 12 12 C 1.50703 * 109.47464 * 270.00147 * 11 10 9 13 13 C 1.38671 * 120.42007 * 269.71999 * 12 11 10 14 14 C 1.38628 * 118.41940 * 179.78004 * 13 12 11 15 15 C 1.38229 * 119.15963 * 0.51293 * 14 13 12 16 16 N 1.31854 * 120.76414 * 359.73135 * 15 14 13 17 17 C 1.31889 * 121.72569 * 359.97438 * 16 15 14 18 18 C 1.34777 * 119.99667 * 90.00587 * 10 9 7 19 19 S 1.71204 * 120.00173 * 179.97438 * 18 10 9 20 20 N 1.34774 * 120.00327 * 359.97438 * 18 10 9 21 21 C 1.34777 * 120.00332 * 180.02562 * 20 18 10 22 22 O 1.21243 * 119.99855 * 0.27419 * 21 20 18 23 23 C 1.50706 * 119.99766 * 179.97438 * 21 20 18 24 24 C 1.52997 * 109.47238 * 299.99577 * 23 21 20 25 25 C 1.52996 * 109.47131 * 179.97438 * 24 23 21 26 26 C 1.53002 * 109.46969 * 60.00062 * 25 24 23 27 27 C 1.53002 * 109.47454 * 300.00051 * 26 25 24 28 28 C 1.52999 * 109.46573 * 179.97438 * 23 21 20 29 29 H 0.97002 * 120.00979 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46611 * 59.99859 * 9 7 2 31 31 H 1.08996 * 109.47253 * 300.00004 * 9 7 2 32 32 H 1.09002 * 109.47055 * 30.00732 * 11 10 9 33 33 H 1.09004 * 109.47419 * 150.00111 * 11 10 9 34 34 H 1.07999 * 120.78588 * 0.02637 * 13 12 11 35 35 H 1.08001 * 120.41963 * 180.22195 * 14 13 12 36 36 H 1.07997 * 119.61834 * 179.74270 * 15 14 13 37 37 H 1.07995 * 119.61260 * 180.02562 * 17 16 15 38 38 H 0.96999 * 119.99625 * 359.97438 * 20 18 10 39 39 H 1.09001 * 109.46740 * 59.99879 * 23 21 20 40 40 H 1.08996 * 109.46952 * 300.00294 * 24 23 21 41 41 H 1.09001 * 109.46832 * 60.00314 * 24 23 21 42 42 H 1.09000 * 109.47380 * 300.00763 * 25 24 23 43 43 H 1.09000 * 109.47054 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.47067 * 179.97438 * 26 25 24 45 45 H 1.09004 * 109.46930 * 59.99996 * 26 25 24 46 46 H 1.08996 * 109.46698 * 299.99898 * 27 26 25 47 47 H 1.09001 * 109.47142 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47486 * 299.99934 * 28 23 21 49 49 H 1.09001 * 109.47362 * 60.00657 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6125 0.0005 11 6 2.6794 -4.1693 -1.2681 12 6 1.7628 -5.2836 -1.7032 13 6 2.0121 -6.5907 -1.3127 14 6 1.1395 -7.5826 -1.7329 15 6 0.0637 -7.2397 -2.5303 16 7 -0.1395 -5.9866 -2.8865 17 6 0.6665 -5.0165 -2.5007 18 6 2.6411 -4.1247 1.1678 19 16 3.7533 -5.4263 1.1679 20 7 2.2035 -3.6123 2.3350 21 6 2.6417 -4.1241 3.5022 22 8 3.4335 -5.0423 3.5022 23 6 2.1527 -3.5507 4.8073 24 6 2.5311 -2.0704 4.8876 25 6 2.0341 -1.4881 6.2122 26 6 2.6798 -2.2435 7.3756 27 6 2.3014 -3.7238 7.2953 28 6 2.7985 -4.3065 5.9702 29 1 -0.4852 0.8400 -0.0004 30 1 0.6249 -2.5571 -0.8897 31 1 0.6242 -2.5568 0.8902 32 1 2.6872 -3.3876 -2.0278 33 1 3.6889 -4.5592 -1.1377 34 1 2.8634 -6.8295 -0.6927 35 1 1.3008 -8.6108 -1.4447 36 1 -0.6183 -8.0071 -2.8653 37 1 0.4676 -4.0018 -2.8123 38 1 1.5736 -2.8746 2.3349 39 1 1.0690 -3.6524 4.8654 40 1 3.6147 -1.9688 4.8294 41 1 2.0706 -1.5322 4.0590 42 1 0.9504 -1.5898 6.2700 43 1 2.3033 -0.4334 6.2692 44 1 2.3260 -1.8283 8.3193 45 1 3.7636 -2.1418 7.3179 46 1 1.2177 -3.8254 7.3531 47 1 2.7619 -4.2619 8.1239 48 1 2.5286 -5.3610 5.9128 49 1 3.8823 -4.2052 5.9122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005559416.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:38 Heat of formation + Delta-G solvation = 9.093053 kcal Electronic energy + Delta-G solvation = -30670.115678 eV Core-core repulsion = 26723.045360 eV Total energy + Delta-G solvation = -3947.070318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.72091 -39.97541 -38.43836 -37.33654 -34.66424 -33.36546 -32.24251 -31.51847 -31.07330 -30.75937 -28.43232 -26.79175 -24.64372 -23.80910 -23.17261 -22.67071 -22.19641 -20.79822 -20.78236 -19.74786 -17.96830 -17.27717 -17.09600 -16.68776 -16.04715 -15.65828 -15.56435 -15.21484 -15.05274 -14.87108 -14.35858 -14.18164 -14.00951 -13.94617 -13.50521 -13.38335 -12.91349 -12.75350 -12.73269 -12.47338 -12.27112 -12.17508 -11.99819 -11.68943 -11.36624 -11.33439 -11.20698 -11.15511 -11.05452 -10.76710 -10.72176 -10.51451 -10.32810 -10.18082 -10.08985 -9.95641 -9.55383 -9.27238 -8.92619 -8.89839 -8.80680 -7.25444 -6.52087 -6.05157 -4.65431 1.23271 1.55267 1.56320 2.44189 2.96147 3.02298 3.05491 3.13088 3.17134 3.66606 4.06161 4.15007 4.52684 4.60633 4.63308 4.66011 4.80662 5.02814 5.07261 5.08563 5.09382 5.15910 5.22939 5.31097 5.38150 5.39300 5.43969 5.52663 5.56133 5.73635 5.81937 5.94361 5.96826 5.98565 6.00566 6.04242 6.06637 6.10948 6.17051 6.23331 6.27756 6.37601 6.45315 6.59730 6.63563 6.92979 6.94721 7.20630 7.43592 7.55128 7.62886 8.16400 8.26522 8.43750 9.05959 10.53020 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.007194 B = 0.004220 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3891.223709 B = 6632.809694 C = 9532.706714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.068 0.932 9 C 0.220 3.780 10 N -0.525 5.525 11 C 0.153 3.847 12 C -0.153 4.153 13 C -0.047 4.047 14 C -0.184 4.184 15 C 0.094 3.906 16 N -0.493 5.493 17 C 0.114 3.886 18 C 0.544 3.456 19 S -0.611 6.611 20 N -0.641 5.641 21 C 0.492 3.508 22 O -0.418 6.418 23 C -0.103 4.103 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.098 4.098 29 H 0.270 0.730 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.159 0.841 35 H 0.130 0.870 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.419 0.581 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.096 -5.156 7.028 8.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.728 3.272 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.086 0.914 9 C 0.099 3.901 10 N -0.228 5.228 11 C 0.029 3.971 12 C -0.157 4.157 13 C -0.074 4.074 14 C -0.204 4.204 15 C -0.064 4.064 16 N -0.201 5.201 17 C -0.043 4.043 18 C 0.187 3.813 19 S -0.478 6.478 20 N -0.287 5.287 21 C 0.273 3.727 22 O -0.283 6.283 23 C -0.125 4.125 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.159 4.159 27 C -0.156 4.156 28 C -0.136 4.136 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.176 0.824 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.260 0.740 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.219 -6.205 6.464 8.963 hybrid contribution -0.126 2.010 0.430 2.059 sum 0.093 -4.195 6.895 8.071 Atomic orbital electron populations 1.69912 1.06064 1.28007 1.47917 1.24935 0.94900 0.99561 0.93889 0.86370 0.80197 0.82528 0.78132 1.19410 1.20465 1.20523 1.21376 0.93850 0.89471 1.54432 0.91373 1.19870 0.87743 0.82845 0.99660 1.47839 1.40840 1.31069 1.03102 1.20612 0.98588 0.94126 0.83798 1.21138 0.98620 0.95767 1.00139 1.22282 0.99035 0.91731 0.94318 1.22181 0.97005 1.00696 1.00557 1.22730 0.95726 0.93488 0.94412 1.67710 1.29021 1.00821 1.22573 1.22790 0.89630 0.98556 0.93352 1.22247 0.87429 0.89795 0.81796 1.92827 1.36887 1.24247 1.93860 1.43377 1.44340 1.35667 1.05333 1.21004 0.82822 0.84247 0.84592 1.91176 1.27367 1.23845 1.85931 1.21462 1.02126 0.96936 0.91970 1.21580 1.02247 0.92896 0.98680 1.21510 1.00536 0.99431 0.93915 1.21575 1.00884 0.95344 0.98121 1.21557 1.01062 0.95788 0.97158 1.21363 1.01052 0.99192 0.92006 0.91993 0.92643 0.94743 0.88062 0.86733 0.82393 0.85169 0.83322 0.82730 0.73972 0.88504 0.91110 0.90787 0.91692 0.91548 0.92106 0.91879 0.91952 0.91735 0.91115 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.60 13.29 55.43 0.74 -20.86 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 18.65 29.54 -169.99 -5.02 13.63 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.55 -12.53 9.39 -34.44 -0.32 -12.85 16 8 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.22 4.51 4.93 -5.19 -0.03 4.48 16 10 N -0.53 -9.79 2.44 -178.46 -0.44 -10.22 16 11 C 0.15 2.55 5.37 -5.19 -0.03 2.52 16 12 C -0.15 -2.45 5.48 -104.48 -0.57 -3.02 16 13 C -0.05 -0.73 9.41 -39.28 -0.37 -1.10 16 14 C -0.18 -2.51 10.11 -39.44 -0.40 -2.91 16 15 C 0.09 1.29 11.18 -17.55 -0.20 1.09 16 16 N -0.49 -7.89 10.36 -13.25 -0.14 -8.03 16 17 C 0.11 1.82 10.86 -17.55 -0.19 1.63 16 18 C 0.54 10.59 7.65 -86.92 -0.66 9.93 16 19 S -0.61 -13.00 22.57 -107.50 -2.43 -15.42 16 20 N -0.64 -11.19 5.00 -12.92 -0.06 -11.26 16 21 C 0.49 8.18 7.08 -10.98 -0.08 8.10 16 22 O -0.42 -8.34 12.73 5.59 0.07 -8.27 16 23 C -0.10 -1.28 2.52 -91.77 -0.23 -1.51 16 24 C -0.12 -1.38 5.10 -26.73 -0.14 -1.52 16 25 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 26 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 27 C -0.12 -1.08 5.92 -26.70 -0.16 -1.24 16 28 C -0.10 -1.13 4.50 -26.70 -0.12 -1.25 16 29 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 30 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 31 H 0.03 0.72 6.37 -51.93 -0.33 0.39 16 32 H 0.10 1.58 8.02 -51.93 -0.42 1.16 16 33 H 0.11 1.96 6.53 -51.93 -0.34 1.62 16 34 H 0.16 2.66 5.95 -52.49 -0.31 2.34 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 38 H 0.42 6.97 5.84 -40.82 -0.24 6.73 16 39 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.94 7.56 -51.93 -0.39 0.55 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 49 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 404.04 15.07 6.09 6.09 Total: -1.00 -28.65 404.04 -12.58 -41.23 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -7.49 Total: 11.72 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -3.91 Total: 1.39 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.10 Total: -50.37 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.07 Total: -8.27 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Atomic # 16 Polarization: -13.00 SS G_CDS: -2.43 Total: -15.42 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.65 -12.58 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005559416.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.323 kcal (2) G-P(sol) polarization free energy of solvation -28.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds