Wall clock time and date at job start Tue Mar 31 2020 05:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99514 * 2 1 4 4 H 1.48503 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47421 * 299.99984 * 3 2 1 6 6 H 1.48503 * 109.47075 * 60.00007 * 3 2 1 7 7 C 1.37866 * 120.00681 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00575 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99974 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00466 * 269.99941 * 10 9 7 12 12 C 1.50703 * 109.47464 * 270.00147 * 11 10 9 13 13 C 1.38671 * 120.42007 * 269.71999 * 12 11 10 14 14 C 1.38628 * 118.41940 * 179.78004 * 13 12 11 15 15 C 1.38229 * 119.15963 * 0.51293 * 14 13 12 16 16 N 1.31854 * 120.76414 * 359.73135 * 15 14 13 17 17 C 1.31889 * 121.72569 * 359.97438 * 16 15 14 18 18 C 1.34777 * 119.99667 * 90.00587 * 10 9 7 19 19 S 1.71204 * 120.00173 * 179.97438 * 18 10 9 20 20 N 1.34774 * 120.00327 * 359.97438 * 18 10 9 21 21 C 1.34777 * 120.00332 * 180.02562 * 20 18 10 22 22 O 1.21243 * 119.99855 * 0.27419 * 21 20 18 23 23 C 1.50706 * 119.99766 * 179.97438 * 21 20 18 24 24 C 1.52997 * 109.47238 * 299.99577 * 23 21 20 25 25 C 1.52996 * 109.47131 * 179.97438 * 24 23 21 26 26 C 1.53002 * 109.46969 * 60.00062 * 25 24 23 27 27 C 1.53002 * 109.47454 * 300.00051 * 26 25 24 28 28 C 1.52999 * 109.46573 * 179.97438 * 23 21 20 29 29 H 0.97002 * 120.00979 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46611 * 59.99859 * 9 7 2 31 31 H 1.08996 * 109.47253 * 300.00004 * 9 7 2 32 32 H 1.09002 * 109.47055 * 30.00732 * 11 10 9 33 33 H 1.09004 * 109.47419 * 150.00111 * 11 10 9 34 34 H 1.07999 * 120.78588 * 0.02637 * 13 12 11 35 35 H 1.08001 * 120.41963 * 180.22195 * 14 13 12 36 36 H 1.07997 * 119.61834 * 179.74270 * 15 14 13 37 37 H 1.07995 * 119.61260 * 180.02562 * 17 16 15 38 38 H 0.96999 * 119.99625 * 359.97438 * 20 18 10 39 39 H 1.09001 * 109.46740 * 59.99879 * 23 21 20 40 40 H 1.08996 * 109.46952 * 300.00294 * 24 23 21 41 41 H 1.09001 * 109.46832 * 60.00314 * 24 23 21 42 42 H 1.09000 * 109.47380 * 300.00763 * 25 24 23 43 43 H 1.09000 * 109.47054 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.47067 * 179.97438 * 26 25 24 45 45 H 1.09004 * 109.46930 * 59.99996 * 26 25 24 46 46 H 1.08996 * 109.46698 * 299.99898 * 27 26 25 47 47 H 1.09001 * 109.47142 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47486 * 299.99934 * 28 23 21 49 49 H 1.09001 * 109.47362 * 60.00657 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6125 0.0005 11 6 2.6794 -4.1693 -1.2681 12 6 1.7628 -5.2836 -1.7032 13 6 2.0121 -6.5907 -1.3127 14 6 1.1395 -7.5826 -1.7329 15 6 0.0637 -7.2397 -2.5303 16 7 -0.1395 -5.9866 -2.8865 17 6 0.6665 -5.0165 -2.5007 18 6 2.6411 -4.1247 1.1678 19 16 3.7533 -5.4263 1.1679 20 7 2.2035 -3.6123 2.3350 21 6 2.6417 -4.1241 3.5022 22 8 3.4335 -5.0423 3.5022 23 6 2.1527 -3.5507 4.8073 24 6 2.5311 -2.0704 4.8876 25 6 2.0341 -1.4881 6.2122 26 6 2.6798 -2.2435 7.3756 27 6 2.3014 -3.7238 7.2953 28 6 2.7985 -4.3065 5.9702 29 1 -0.4852 0.8400 -0.0004 30 1 0.6249 -2.5571 -0.8897 31 1 0.6242 -2.5568 0.8902 32 1 2.6872 -3.3876 -2.0278 33 1 3.6889 -4.5592 -1.1377 34 1 2.8634 -6.8295 -0.6927 35 1 1.3008 -8.6108 -1.4447 36 1 -0.6183 -8.0071 -2.8653 37 1 0.4676 -4.0018 -2.8123 38 1 1.5736 -2.8746 2.3349 39 1 1.0690 -3.6524 4.8654 40 1 3.6147 -1.9688 4.8294 41 1 2.0706 -1.5322 4.0590 42 1 0.9504 -1.5898 6.2700 43 1 2.3033 -0.4334 6.2692 44 1 2.3260 -1.8283 8.3193 45 1 3.7636 -2.1418 7.3179 46 1 1.2177 -3.8254 7.3531 47 1 2.7619 -4.2619 8.1239 48 1 2.5286 -5.3610 5.9128 49 1 3.8823 -4.2052 5.9122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005559416.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:37 Heat of formation + Delta-G solvation = -3.348290 kcal Electronic energy + Delta-G solvation = -30670.655175 eV Core-core repulsion = 26723.045360 eV Total energy + Delta-G solvation = -3947.609815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09750 -41.18931 -39.70912 -38.50471 -36.11143 -35.10302 -33.55121 -32.65434 -32.13299 -31.63396 -30.11162 -28.11050 -26.21038 -25.09273 -24.39630 -23.61703 -23.30942 -22.33670 -21.96823 -20.67665 -19.38274 -18.83101 -18.68385 -17.93191 -17.28027 -16.92892 -16.89516 -16.72918 -16.38432 -16.16559 -15.52634 -15.37446 -15.09008 -15.01766 -14.78352 -14.62728 -14.29062 -14.01008 -13.92217 -13.66127 -13.58433 -13.30471 -13.14796 -13.09227 -12.97501 -12.76021 -12.49193 -12.43182 -12.29145 -12.05416 -11.99317 -11.79875 -11.76279 -11.38571 -11.10275 -11.02575 -10.79001 -10.73335 -10.54639 -10.30859 -10.04421 -8.91419 -8.32569 -7.67982 -6.51252 -0.02716 0.08942 0.34888 0.86816 1.37142 1.44034 1.51453 1.56098 1.65237 2.17962 2.36201 2.91991 2.98353 3.40671 3.50669 3.68918 3.74799 3.80068 3.82461 4.07995 4.16727 4.17881 4.25061 4.28435 4.33258 4.40040 4.45564 4.53449 4.58004 4.61031 4.67424 4.69831 4.78291 4.84001 4.91607 4.95791 5.09975 5.16074 5.24619 5.25564 5.27909 5.34085 5.38614 5.38921 5.47636 5.51472 5.56239 5.73735 5.77078 5.77818 6.12750 6.59567 6.89854 6.99106 7.22580 8.71340 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.007194 B = 0.004220 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3891.223709 B = 6632.809694 C = 9532.706714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.040 3.960 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.554 4.554 8 H 0.055 0.945 9 C 0.234 3.766 10 N -0.519 5.519 11 C 0.154 3.846 12 C -0.159 4.159 13 C -0.058 4.058 14 C -0.177 4.177 15 C 0.096 3.904 16 N -0.511 5.511 17 C 0.106 3.894 18 C 0.547 3.453 19 S -0.652 6.652 20 N -0.637 5.637 21 C 0.489 3.511 22 O -0.453 6.453 23 C -0.092 4.092 24 C -0.114 4.114 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.112 4.112 28 C -0.095 4.095 29 H 0.273 0.727 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.145 0.855 35 H 0.160 0.840 36 H 0.185 0.815 37 H 0.156 0.844 38 H 0.424 0.576 39 H 0.118 0.882 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.062 0.938 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 -4.991 8.045 9.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.163 4.163 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.593 4.593 8 H 0.074 0.926 9 C 0.112 3.888 10 N -0.222 5.222 11 C 0.030 3.970 12 C -0.163 4.163 13 C -0.085 4.085 14 C -0.197 4.197 15 C -0.061 4.061 16 N -0.220 5.220 17 C -0.051 4.051 18 C 0.188 3.812 19 S -0.520 6.520 20 N -0.284 5.284 21 C 0.273 3.727 22 O -0.320 6.320 23 C -0.114 4.114 24 C -0.152 4.152 25 C -0.151 4.151 26 C -0.157 4.157 27 C -0.149 4.149 28 C -0.133 4.133 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.202 0.798 37 H 0.173 0.827 38 H 0.266 0.734 39 H 0.136 0.864 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.081 0.919 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.935 -6.029 7.485 9.656 hybrid contribution 0.219 1.903 0.076 1.917 sum -0.716 -4.126 7.562 8.644 Atomic orbital electron populations 1.69969 1.06954 1.28698 1.48735 1.25465 0.95419 1.01810 0.93653 0.85575 0.78738 0.79702 0.78133 1.20009 1.20481 1.19905 1.21432 0.93275 0.90475 1.54102 0.92628 1.19596 0.87564 0.82564 0.99064 1.47880 1.40191 1.30454 1.03644 1.20673 0.98469 0.94730 0.83084 1.20987 0.98764 0.95635 1.00875 1.22253 0.99332 0.92236 0.94695 1.22484 0.96061 1.01600 0.99535 1.23324 0.95980 0.93374 0.93417 1.67746 1.29273 1.01755 1.23186 1.22804 0.89757 0.98912 0.93644 1.22179 0.87097 0.89422 0.82525 1.92870 1.38797 1.26033 1.94257 1.43541 1.44122 1.35556 1.05137 1.21894 0.81902 0.83526 0.85345 1.91154 1.28964 1.25490 1.86399 1.21517 1.03222 0.97159 0.89516 1.21565 1.01464 0.92259 0.99888 1.21513 1.01177 0.99653 0.92710 1.21577 1.00576 0.95048 0.98542 1.21539 1.01820 0.95869 0.95704 1.21351 1.00042 0.98850 0.93085 0.91802 0.93440 0.94954 0.87309 0.87402 0.83756 0.82276 0.79768 0.82700 0.73417 0.86375 0.92357 0.91830 0.90616 0.91051 0.90216 0.92425 0.90713 0.90542 0.91899 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.85 13.29 21.44 0.28 -43.56 16 2 C 0.04 1.83 5.46 84.65 0.46 2.29 16 3 Si 0.95 37.78 29.54 68.60 2.03 39.81 16 4 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 7 C -0.55 -25.14 9.39 25.60 0.24 -24.90 16 8 H 0.06 2.65 7.81 -2.91 -0.02 2.62 16 9 C 0.23 9.65 4.93 85.64 0.42 10.07 16 10 N -0.52 -19.67 2.44 -718.53 -1.75 -21.43 16 11 C 0.15 5.24 5.37 85.63 0.46 5.70 16 12 C -0.16 -5.12 5.48 -19.77 -0.11 -5.23 16 13 C -0.06 -1.81 9.41 22.47 0.21 -1.60 16 14 C -0.18 -4.52 10.11 22.36 0.23 -4.29 16 15 C 0.10 2.43 11.18 84.69 0.95 3.37 16 16 N -0.51 -15.76 10.36 -195.85 -2.03 -17.79 16 17 C 0.11 3.36 10.86 84.67 0.92 4.28 16 18 C 0.55 21.70 7.65 179.06 1.37 23.07 16 19 S -0.65 -28.52 22.57 -56.49 -1.27 -29.80 16 20 N -0.64 -22.52 5.00 -313.21 -1.56 -24.08 16 21 C 0.49 16.45 7.08 87.66 0.62 17.08 16 22 O -0.45 -18.55 12.73 -2.92 -0.04 -18.59 16 23 C -0.09 -2.23 2.52 -11.54 -0.03 -2.26 16 24 C -0.11 -2.61 5.10 30.59 0.16 -2.45 16 25 C -0.11 -1.98 5.92 30.59 0.18 -1.79 16 26 C -0.12 -1.85 5.92 30.60 0.18 -1.67 16 27 C -0.11 -1.78 5.92 30.61 0.18 -1.60 16 28 C -0.10 -2.12 4.50 30.61 0.14 -1.98 16 29 H 0.27 12.59 8.31 -92.71 -0.77 11.82 16 30 H 0.05 2.06 8.07 -2.39 -0.02 2.04 16 31 H 0.03 1.36 6.37 -2.39 -0.02 1.35 16 32 H 0.11 3.48 8.02 -2.39 -0.02 3.46 16 33 H 0.11 3.84 6.53 -2.38 -0.02 3.82 16 34 H 0.14 4.95 5.95 -2.91 -0.02 4.93 16 35 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 36 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.16 4.76 8.06 -2.91 -0.02 4.74 16 38 H 0.42 14.14 5.84 -92.71 -0.54 13.59 16 39 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.58 7.56 -2.39 -0.02 1.57 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 49 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 Total: -1.00 -61.34 404.04 2.65 -58.69 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: 0.42 Total: 38.66 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 6.58 Total: 18.08 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -5.06 Total: -106.86 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.04 Total: -18.59 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 16 Polarization: -28.52 SS G_CDS: -1.27 Total: -29.80 kcal Total: -61.34 2.65 -58.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005559416.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.346 kcal (2) G-P(sol) polarization free energy of solvation -61.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds