Wall clock time and date at job start Tue Mar 31 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99827 * 2 1 4 4 H 1.48496 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00110 * 3 2 1 6 6 H 1.48508 * 109.46910 * 59.99414 * 3 2 1 7 7 C 1.37874 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00150 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99878 * 0.02562 * 7 2 1 10 10 S 1.81002 * 109.47344 * 180.02562 * 9 7 2 11 11 C 1.76194 * 100.00065 * 179.97438 * 10 9 7 12 12 N 1.31414 * 126.38438 * 0.04457 * 11 10 9 13 13 N 1.28513 * 110.08796 * 179.97438 * 12 11 10 14 14 C 1.31269 * 109.96159 * 359.97438 * 13 12 11 15 15 C 1.47817 * 126.46394 * 180.26225 * 14 13 12 16 16 C 1.39574 * 120.15600 * 131.32323 * 15 14 13 17 17 C 1.37946 * 119.87776 * 179.70038 * 16 15 14 18 18 C 1.38389 * 120.19336 * 0.57353 * 17 16 15 19 19 C 1.38292 * 120.32113 * 359.72119 * 18 17 16 20 20 C 1.38224 * 120.11916 * 359.97438 * 19 18 17 21 21 F 1.35096 * 120.10071 * 179.97438 * 20 19 18 22 22 N 1.36603 * 126.38488 * 179.97438 * 11 10 9 23 23 C 1.46503 * 127.17354 * 0.02562 * 22 11 10 24 24 C 1.53004 * 109.46936 * 59.97523 * 23 22 11 25 25 C 1.53007 * 109.46856 * 180.02562 * 24 23 22 26 26 C 1.53002 * 109.47103 * 60.00178 * 25 24 23 27 27 C 1.53005 * 109.47116 * 300.00056 * 26 25 24 28 28 C 1.52998 * 109.47257 * 59.99797 * 27 26 25 29 29 H 0.96995 * 120.00234 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47133 * 59.99795 * 9 7 2 31 31 H 1.09001 * 109.47034 * 300.00254 * 9 7 2 32 32 H 1.08003 * 120.05942 * 359.97438 * 16 15 14 33 33 H 1.07997 * 119.90249 * 180.27144 * 17 16 15 34 34 H 1.07998 * 119.84127 * 179.74573 * 18 17 16 35 35 H 1.08003 * 119.94090 * 180.02562 * 19 18 17 36 36 H 1.08990 * 109.47337 * 179.97438 * 23 22 11 37 37 H 1.08997 * 109.47482 * 299.99866 * 24 23 22 38 38 H 1.09001 * 109.47225 * 60.00415 * 24 23 22 39 39 H 1.08997 * 109.46860 * 300.00118 * 25 24 23 40 40 H 1.09002 * 109.46998 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.46770 * 180.02562 * 26 25 24 42 42 H 1.09004 * 109.47179 * 59.99896 * 26 25 24 43 43 H 1.08997 * 109.47161 * 300.00253 * 27 26 25 44 44 H 1.08993 * 109.46896 * 179.97438 * 27 26 25 45 45 H 1.08994 * 109.47703 * 179.97438 * 28 27 26 46 46 H 1.09005 * 109.46989 * 59.99634 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 16 2.4274 -3.8748 0.0021 11 6 1.3074 -5.2350 0.0026 12 7 -0.0048 -5.1643 0.0011 13 7 -0.5105 -6.3457 0.0015 14 6 0.4475 -7.2432 0.0027 15 6 0.2758 -8.7114 -0.0020 16 6 0.9893 -9.4979 -0.9078 17 6 0.8293 -10.8680 -0.9030 18 6 -0.0452 -11.4635 -0.0108 19 6 -0.7608 -10.6915 0.8860 20 6 -0.6059 -9.3180 0.8969 21 9 -1.3055 -8.5642 1.7728 22 7 1.6413 -6.5596 0.0032 23 6 2.9896 -7.1327 0.0041 24 6 3.7406 -6.6674 1.2533 25 6 5.1490 -7.2654 1.2539 26 6 5.9006 -6.8015 0.0046 27 6 5.1495 -7.2667 -1.2446 28 6 3.7412 -6.6687 -1.2452 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 1.6687 -9.0350 -1.6082 33 1 1.3845 -11.4774 -1.6007 34 1 -0.1691 -12.5364 -0.0148 35 1 -1.4412 -11.1627 1.5799 36 1 2.9220 -8.2205 0.0049 37 1 3.8083 -5.5796 1.2526 38 1 3.2050 -6.9976 2.1434 39 1 5.0817 -8.3533 1.2544 40 1 5.6839 -6.9344 2.1441 41 1 6.9037 -7.2279 0.0049 42 1 5.9678 -5.7135 0.0041 43 1 5.0822 -8.3545 -1.2441 44 1 5.6847 -6.9358 -2.1346 45 1 3.2063 -6.9997 -2.1353 46 1 3.8084 -5.5808 -1.2456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006508341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:49 Heat of formation + Delta-G solvation = 31.131945 kcal Electronic energy + Delta-G solvation = -30124.435488 eV Core-core repulsion = 26054.860543 eV Total energy + Delta-G solvation = -4069.574945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.132 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.93748 -42.51761 -39.11880 -38.71787 -34.27964 -33.18473 -32.58120 -31.05040 -30.91466 -29.53004 -29.24497 -28.47054 -24.39956 -23.49485 -23.05824 -23.02286 -22.82973 -21.84060 -20.70736 -19.76036 -18.07832 -17.54641 -16.68977 -16.52536 -16.17917 -15.97527 -15.59228 -15.45393 -15.26090 -14.72777 -14.63073 -14.42388 -14.27801 -14.08278 -13.36874 -13.33567 -13.11949 -12.92695 -12.66223 -12.46710 -12.44375 -12.36876 -12.24594 -11.77360 -11.43133 -11.37992 -11.32788 -10.94187 -10.87817 -10.78818 -10.73199 -10.63449 -10.52244 -10.18902 -9.89508 -9.78426 -9.61219 -9.21147 -9.15397 -8.83445 -8.58745 -6.87751 -6.19737 -4.28449 0.58015 0.85777 1.77033 1.99098 2.73869 3.08434 3.23712 3.30199 3.32013 3.34615 3.43060 3.95108 4.07581 4.30282 4.33074 4.42255 4.45779 4.55867 4.66926 4.78472 4.84133 4.92484 4.96687 4.99913 5.16417 5.19135 5.26735 5.33080 5.36275 5.48252 5.54942 5.67241 5.70927 5.76757 5.79531 5.83947 5.88488 5.98129 6.00704 6.00824 6.06132 6.07717 6.23879 6.35534 6.49534 6.95727 7.12306 7.23745 7.67211 7.92835 8.72497 9.00238 9.35179 10.90575 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.011236 B = 0.003205 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.408835 B = 8733.414942 C =10590.612014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.526 4.526 8 H 0.067 0.933 9 C 0.072 3.928 10 S -0.045 6.045 11 C 0.189 3.811 12 N -0.287 5.287 13 N -0.257 5.257 14 C 0.185 3.815 15 C -0.036 4.036 16 C -0.076 4.076 17 C -0.130 4.130 18 C -0.082 4.082 19 C -0.155 4.155 20 C 0.138 3.862 21 F -0.121 7.121 22 N -0.458 5.458 23 C 0.140 3.860 24 C -0.140 4.140 25 C -0.110 4.110 26 C -0.125 4.125 27 C -0.110 4.110 28 C -0.140 4.140 29 H 0.267 0.733 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.317 -25.046 -0.779 26.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.566 4.566 8 H 0.085 0.915 9 C -0.075 4.075 10 S 0.185 5.815 11 C -0.184 4.184 12 N -0.132 5.132 13 N -0.098 5.098 14 C -0.082 4.082 15 C -0.040 4.040 16 C -0.095 4.095 17 C -0.148 4.148 18 C -0.101 4.101 19 C -0.173 4.173 20 C 0.117 3.883 21 F -0.099 7.099 22 N -0.152 5.152 23 C 0.037 3.963 24 C -0.178 4.178 25 C -0.148 4.148 26 C -0.163 4.163 27 C -0.148 4.148 28 C -0.179 4.179 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.910 -24.217 -0.740 25.815 hybrid contribution -0.063 0.467 0.156 0.496 sum 8.846 -23.750 -0.584 25.351 Atomic orbital electron populations 1.69992 1.06097 1.27390 1.48149 1.24943 0.94948 0.99156 0.94410 0.86310 0.79931 0.82593 0.77873 1.19429 1.20626 1.20627 1.20599 0.93217 0.88576 1.54204 0.91471 1.21410 0.94054 0.89507 1.02576 1.85329 1.11145 0.94093 1.90898 1.27414 0.97678 0.88617 1.04658 1.74883 1.03457 1.14205 1.20636 1.74386 1.24864 0.94978 1.15547 1.22423 0.82409 0.93463 1.09916 1.17501 1.00479 0.87351 0.98635 1.21160 0.98153 0.93684 0.96546 1.21091 0.99686 0.94067 0.99932 1.21130 0.94700 1.00258 0.93968 1.21129 1.02847 0.91244 1.02121 1.17693 0.92596 0.88917 0.89134 1.91584 1.76221 1.76087 1.66056 1.46724 1.07290 1.05052 1.56159 1.21598 0.78217 0.98676 0.97772 1.22044 0.95911 1.03867 0.96021 1.21453 0.94475 1.00224 0.98684 1.21613 0.98537 1.02075 0.94050 1.21455 0.94467 1.00208 0.98708 1.22063 0.95927 1.04024 0.95870 0.92317 0.92908 0.92917 0.84974 0.84748 0.84626 0.84084 0.88171 0.88911 0.91361 0.91985 0.91022 0.91620 0.91007 0.91951 0.90987 0.91346 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 3 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.46 9.13 -34.44 -0.31 -14.78 16 8 H 0.07 1.78 7.71 -52.49 -0.40 1.38 16 9 C 0.07 1.90 4.99 36.01 0.18 2.08 16 10 S -0.04 -0.93 18.02 -107.50 -1.94 -2.87 16 11 C 0.19 3.95 7.57 -88.17 -0.67 3.28 16 12 N -0.29 -6.87 11.59 30.71 0.36 -6.52 16 13 N -0.26 -5.66 12.07 32.59 0.39 -5.27 16 14 C 0.18 3.30 7.13 -153.77 -1.10 2.21 16 15 C -0.04 -0.50 5.56 -104.91 -0.58 -1.08 16 16 C -0.08 -0.76 8.31 -39.19 -0.33 -1.08 16 17 C -0.13 -0.94 10.03 -39.63 -0.40 -1.34 16 18 C -0.08 -0.57 10.04 -39.51 -0.40 -0.97 16 19 C -0.15 -1.42 10.01 -39.57 -0.40 -1.82 16 20 C 0.14 1.82 7.28 -39.02 -0.28 1.54 16 21 F -0.12 -1.95 16.70 2.25 0.04 -1.91 16 22 N -0.46 -7.77 2.68 -107.01 -0.29 -8.05 16 23 C 0.14 1.74 2.45 -67.93 -0.17 1.58 16 24 C -0.14 -1.69 5.25 -26.73 -0.14 -1.83 16 25 C -0.11 -0.97 5.92 -26.73 -0.16 -1.13 16 26 C -0.13 -1.05 5.92 -26.73 -0.16 -1.21 16 27 C -0.11 -0.92 5.92 -26.73 -0.16 -1.07 16 28 C -0.14 -1.60 5.25 -26.73 -0.14 -1.74 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.05 1.51 8.14 -51.92 -0.42 1.09 16 31 H 0.05 1.52 8.14 -51.91 -0.42 1.09 16 32 H 0.13 1.19 7.63 -52.48 -0.40 0.79 16 33 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.10 1.05 6.12 -51.93 -0.32 0.73 16 37 H 0.09 1.32 6.03 -51.93 -0.31 1.01 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.09 1.29 6.02 -51.93 -0.31 0.97 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -33.30 388.81 -11.54 -44.84 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.38 Total: -1.38 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -5.30 Total: -15.48 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 1.20 Total: -45.04 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -1.94 Total: -2.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.30 -11.54 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006508341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.975 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds