Wall clock time and date at job start Tue Mar 31 2020 05:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99827 * 2 1 4 4 H 1.48496 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00110 * 3 2 1 6 6 H 1.48508 * 109.46910 * 59.99414 * 3 2 1 7 7 C 1.37874 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00150 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99878 * 0.02562 * 7 2 1 10 10 S 1.81002 * 109.47344 * 180.02562 * 9 7 2 11 11 C 1.76194 * 100.00065 * 179.97438 * 10 9 7 12 12 N 1.31414 * 126.38438 * 0.04457 * 11 10 9 13 13 N 1.28513 * 110.08796 * 179.97438 * 12 11 10 14 14 C 1.31269 * 109.96159 * 359.97438 * 13 12 11 15 15 C 1.47817 * 126.46394 * 180.26225 * 14 13 12 16 16 C 1.39574 * 120.15600 * 131.32323 * 15 14 13 17 17 C 1.37946 * 119.87776 * 179.70038 * 16 15 14 18 18 C 1.38389 * 120.19336 * 0.57353 * 17 16 15 19 19 C 1.38292 * 120.32113 * 359.72119 * 18 17 16 20 20 C 1.38224 * 120.11916 * 359.97438 * 19 18 17 21 21 F 1.35096 * 120.10071 * 179.97438 * 20 19 18 22 22 N 1.36603 * 126.38488 * 179.97438 * 11 10 9 23 23 C 1.46503 * 127.17354 * 0.02562 * 22 11 10 24 24 C 1.53004 * 109.46936 * 59.97523 * 23 22 11 25 25 C 1.53007 * 109.46856 * 180.02562 * 24 23 22 26 26 C 1.53002 * 109.47103 * 60.00178 * 25 24 23 27 27 C 1.53005 * 109.47116 * 300.00056 * 26 25 24 28 28 C 1.52998 * 109.47257 * 59.99797 * 27 26 25 29 29 H 0.96995 * 120.00234 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47133 * 59.99795 * 9 7 2 31 31 H 1.09001 * 109.47034 * 300.00254 * 9 7 2 32 32 H 1.08003 * 120.05942 * 359.97438 * 16 15 14 33 33 H 1.07997 * 119.90249 * 180.27144 * 17 16 15 34 34 H 1.07998 * 119.84127 * 179.74573 * 18 17 16 35 35 H 1.08003 * 119.94090 * 180.02562 * 19 18 17 36 36 H 1.08990 * 109.47337 * 179.97438 * 23 22 11 37 37 H 1.08997 * 109.47482 * 299.99866 * 24 23 22 38 38 H 1.09001 * 109.47225 * 60.00415 * 24 23 22 39 39 H 1.08997 * 109.46860 * 300.00118 * 25 24 23 40 40 H 1.09002 * 109.46998 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.46770 * 180.02562 * 26 25 24 42 42 H 1.09004 * 109.47179 * 59.99896 * 26 25 24 43 43 H 1.08997 * 109.47161 * 300.00253 * 27 26 25 44 44 H 1.08993 * 109.46896 * 179.97438 * 27 26 25 45 45 H 1.08994 * 109.47703 * 179.97438 * 28 27 26 46 46 H 1.09005 * 109.46989 * 59.99634 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 16 2.4274 -3.8748 0.0021 11 6 1.3074 -5.2350 0.0026 12 7 -0.0048 -5.1643 0.0011 13 7 -0.5105 -6.3457 0.0015 14 6 0.4475 -7.2432 0.0027 15 6 0.2758 -8.7114 -0.0020 16 6 0.9893 -9.4979 -0.9078 17 6 0.8293 -10.8680 -0.9030 18 6 -0.0452 -11.4635 -0.0108 19 6 -0.7608 -10.6915 0.8860 20 6 -0.6059 -9.3180 0.8969 21 9 -1.3055 -8.5642 1.7728 22 7 1.6413 -6.5596 0.0032 23 6 2.9896 -7.1327 0.0041 24 6 3.7406 -6.6674 1.2533 25 6 5.1490 -7.2654 1.2539 26 6 5.9006 -6.8015 0.0046 27 6 5.1495 -7.2667 -1.2446 28 6 3.7412 -6.6687 -1.2452 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 1.6687 -9.0350 -1.6082 33 1 1.3845 -11.4774 -1.6007 34 1 -0.1691 -12.5364 -0.0148 35 1 -1.4412 -11.1627 1.5799 36 1 2.9220 -8.2205 0.0049 37 1 3.8083 -5.5796 1.2526 38 1 3.2050 -6.9976 2.1434 39 1 5.0817 -8.3533 1.2544 40 1 5.6839 -6.9344 2.1441 41 1 6.9037 -7.2279 0.0049 42 1 5.9678 -5.7135 0.0041 43 1 5.0822 -8.3545 -1.2441 44 1 5.6847 -6.9358 -2.1346 45 1 3.2063 -6.9997 -2.1353 46 1 3.8084 -5.5808 -1.2456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006508341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:48 Heat of formation + Delta-G solvation = 13.671827 kcal Electronic energy + Delta-G solvation = -30125.192616 eV Core-core repulsion = 26054.860543 eV Total energy + Delta-G solvation = -4070.332073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.132 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.00849 -44.00331 -39.93347 -39.62772 -35.51755 -35.30504 -33.63932 -31.86636 -31.69016 -30.96698 -30.55359 -30.21747 -25.71801 -25.08362 -24.54585 -23.84288 -23.64532 -23.01978 -21.87949 -20.66961 -19.28811 -18.73039 -18.34775 -17.67854 -17.51571 -17.23595 -16.84948 -16.66797 -16.54361 -16.13133 -15.47155 -15.32239 -15.14927 -15.02630 -14.83808 -14.53356 -14.45043 -14.24703 -14.21687 -13.88401 -13.47659 -13.28394 -13.06925 -12.88526 -12.79781 -12.76394 -12.44754 -12.42530 -12.21565 -12.20820 -11.88755 -11.80921 -11.65150 -11.52042 -11.44309 -11.30374 -10.95663 -10.88526 -10.77480 -10.06086 -9.76867 -8.59283 -8.34671 -6.53583 -0.32422 0.12059 0.14184 0.60899 1.34362 1.39510 1.41326 1.49482 1.57379 1.60631 2.34634 2.51616 2.95341 2.99517 3.14082 3.28097 3.54247 3.67750 3.80244 3.91249 3.95468 4.04685 4.14645 4.15152 4.24129 4.27638 4.39885 4.43615 4.48430 4.50944 4.63916 4.74768 4.84464 4.91669 4.95579 4.97842 4.98764 5.06057 5.07778 5.15716 5.17419 5.23439 5.28335 5.32660 5.33771 5.49709 5.52616 5.67646 5.75992 5.80686 6.56035 7.16378 7.43757 8.77969 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.011236 B = 0.003205 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.408835 B = 8733.414942 C =10590.612014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.068 3.932 10 S 0.018 5.982 11 C 0.167 3.833 12 N -0.341 5.341 13 N -0.313 5.313 14 C 0.213 3.787 15 C -0.075 4.075 16 C -0.074 4.074 17 C -0.110 4.110 18 C -0.060 4.060 19 C -0.150 4.150 20 C 0.102 3.898 21 F -0.152 7.152 22 N -0.447 5.447 23 C 0.132 3.868 24 C -0.140 4.140 25 C -0.102 4.102 26 C -0.126 4.126 27 C -0.102 4.102 28 C -0.139 4.139 29 H 0.271 0.729 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.143 0.857 33 H 0.179 0.821 34 H 0.182 0.818 35 H 0.161 0.839 36 H 0.131 0.869 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.854 -29.441 -1.762 32.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.096 0.904 9 C -0.080 4.080 10 S 0.248 5.752 11 C -0.208 4.208 12 N -0.185 5.185 13 N -0.153 5.153 14 C -0.056 4.056 15 C -0.079 4.079 16 C -0.094 4.094 17 C -0.128 4.128 18 C -0.078 4.078 19 C -0.168 4.168 20 C 0.081 3.919 21 F -0.131 7.131 22 N -0.141 5.141 23 C 0.032 3.968 24 C -0.179 4.179 25 C -0.140 4.140 26 C -0.163 4.163 27 C -0.140 4.140 28 C -0.178 4.178 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.160 0.840 33 H 0.196 0.804 34 H 0.199 0.801 35 H 0.179 0.821 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.471 -28.645 -1.724 31.290 hybrid contribution -1.196 1.475 0.449 1.951 sum 11.275 -27.170 -1.275 29.445 Atomic orbital electron populations 1.70152 1.08242 1.28687 1.49120 1.26071 0.95811 1.03549 0.93402 0.85115 0.79067 0.77035 0.78118 1.17706 1.19849 1.19981 1.20973 0.93729 0.89265 1.54180 0.90417 1.20983 0.95077 0.93081 0.98847 1.84730 1.07804 0.91233 1.91472 1.27278 0.97125 0.90334 1.06104 1.74744 1.05319 1.16111 1.22306 1.74257 1.26860 0.95191 1.18993 1.23251 0.81724 0.95136 1.05472 1.17724 1.03532 0.84966 1.01693 1.21371 0.97547 0.94887 0.95546 1.21605 0.98757 0.92756 0.99668 1.21725 0.92256 1.02213 0.91572 1.21471 1.03152 0.89325 1.02876 1.18220 0.93410 0.90507 0.89739 1.91504 1.77142 1.77192 1.67245 1.47041 1.08943 1.03410 1.54665 1.22109 0.75974 1.00116 0.98642 1.22067 0.98256 1.02242 0.95344 1.21458 0.91785 1.01443 0.99342 1.21638 0.99821 1.01090 0.93770 1.21469 0.91810 1.01662 0.99067 1.22089 0.98170 1.02302 0.95193 0.92021 0.96692 0.96948 0.83972 0.80384 0.80070 0.82111 0.85127 0.91772 0.92501 0.89465 0.90438 0.89049 0.92986 0.89087 0.89988 0.91111 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.62 13.29 21.45 0.28 -57.33 16 2 C 0.01 0.76 5.46 84.65 0.46 1.22 16 3 Si 0.98 43.96 29.54 68.60 2.03 45.98 16 4 H -0.25 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.54 -31.34 9.13 25.60 0.23 -31.11 16 8 H 0.08 4.22 7.71 -2.91 -0.02 4.20 16 9 C 0.07 3.95 4.99 71.24 0.36 4.30 16 10 S 0.02 0.80 18.02 -56.49 -1.02 -0.22 16 11 C 0.17 7.53 7.57 179.49 1.36 8.89 16 12 N -0.34 -17.99 11.59 -56.75 -0.66 -18.65 16 13 N -0.31 -15.08 12.07 -50.82 -0.61 -15.69 16 14 C 0.21 8.02 7.13 136.20 0.97 8.99 16 15 C -0.08 -2.06 5.56 -20.05 -0.11 -2.17 16 16 C -0.07 -1.24 8.31 22.52 0.19 -1.06 16 17 C -0.11 -0.95 10.03 22.24 0.22 -0.73 16 18 C -0.06 -0.49 10.04 22.32 0.22 -0.26 16 19 C -0.15 -2.31 10.01 22.28 0.22 -2.09 16 20 C 0.10 2.69 7.28 22.63 0.16 2.86 16 21 F -0.15 -5.25 16.70 44.97 0.75 -4.50 16 22 N -0.45 -15.87 2.68 -492.48 -1.32 -17.19 16 23 C 0.13 3.18 2.45 44.99 0.11 3.29 16 24 C -0.14 -3.34 5.25 30.60 0.16 -3.18 16 25 C -0.10 -1.52 5.92 30.60 0.18 -1.34 16 26 C -0.13 -1.74 5.92 30.60 0.18 -1.55 16 27 C -0.10 -1.34 5.92 30.60 0.18 -1.16 16 28 C -0.14 -2.99 5.25 30.59 0.16 -2.83 16 29 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.01 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.14 2.06 7.63 -2.91 -0.02 2.04 16 33 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 34 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 35 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.13 2.35 6.12 -2.39 -0.01 2.34 16 37 H 0.06 1.89 6.03 -2.39 -0.01 1.88 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 41 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.06 1.76 6.02 -2.38 -0.01 1.75 16 Total: -1.00 -84.57 388.81 5.72 -78.85 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.00 Total: 6.68 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 5.27 Total: -17.93 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -2.31 Total: -108.86 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.75 Total: -4.50 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -1.02 Total: -0.22 kcal Total: -84.57 5.72 -78.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006508341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.522 kcal (2) G-P(sol) polarization free energy of solvation -84.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds