Wall clock time and date at job start Tue Mar 31 2020 05:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34220 * 117.00223 * 2 1 4 4 O 1.20830 * 120.00138 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00144 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47327 * 180.02562 * 5 3 2 7 7 C 1.34781 * 119.99841 * 180.02562 * 6 5 3 8 8 O 1.21620 * 120.00162 * 359.97438 * 7 6 5 9 9 C 1.47276 * 119.99726 * 179.97438 * 7 6 5 10 10 C 1.37969 * 126.81055 * 0.29829 * 9 7 6 11 11 N 1.34147 * 107.88859 * 180.10507 * 10 9 7 12 12 C 1.46506 * 125.16254 * 179.90224 * 11 10 9 13 13 C 1.50703 * 109.47289 * 124.71606 * 12 11 10 14 14 H 1.07994 * 119.99399 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99789 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99734 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00111 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47123 * 89.99915 * 17 15 13 19 19 H 1.48498 * 109.47161 * 209.99603 * 17 15 13 20 20 H 1.48497 * 109.47329 * 329.99749 * 17 15 13 21 21 N 1.39772 * 109.67797 * 359.63253 * 11 10 9 22 22 C 1.31371 * 109.07792 * 0.22949 * 21 11 10 23 23 C 1.48277 * 126.51113 * 179.97438 * 22 21 11 24 24 C 1.39394 * 120.09601 * 144.75004 * 23 22 21 25 25 C 1.37971 * 119.89719 * 179.77086 * 24 23 22 26 26 C 1.38553 * 120.09584 * 0.50371 * 25 24 23 27 27 F 1.35107 * 119.89458 * 179.76661 * 26 25 24 28 28 C 1.38553 * 120.20414 * 359.75027 * 26 25 24 29 29 C 1.37957 * 120.10133 * 359.97438 * 28 26 25 30 30 H 1.09003 * 109.46746 * 300.00093 * 1 2 3 31 31 H 1.09001 * 109.46840 * 59.99672 * 1 2 3 32 32 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47065 * 59.99730 * 5 3 2 34 34 H 1.08998 * 109.47066 * 300.00713 * 5 3 2 35 35 H 0.96996 * 119.99973 * 359.97438 * 6 5 3 36 36 H 1.08001 * 126.05925 * 359.96434 * 10 9 7 37 37 H 1.09001 * 109.47060 * 244.72056 * 12 11 10 38 38 H 1.09004 * 109.47073 * 4.71545 * 12 11 10 39 39 H 0.97007 * 120.00011 * 180.02562 * 16 15 13 40 40 H 1.08005 * 120.05427 * 0.02562 * 24 23 22 41 41 H 1.07998 * 119.94668 * 180.23178 * 25 24 23 42 42 H 1.08000 * 119.95154 * 179.97438 * 28 26 25 43 43 H 1.07998 * 120.05331 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 0.0011 7 6 5.2923 2.9948 0.0011 8 8 6.1298 2.1130 0.0012 9 6 5.7099 4.4071 0.0011 10 6 4.8850 5.5131 0.0067 11 7 5.6620 6.6066 0.0021 12 6 5.1743 7.9881 0.0036 13 6 5.7760 8.7320 1.1680 14 1 6.4541 8.2263 1.8394 15 6 5.4615 10.0583 1.3754 16 7 5.9861 10.7072 2.3918 17 14 4.2891 10.9329 0.2135 18 1 2.8973 10.7826 0.7090 19 1 4.6389 12.3747 0.1501 20 1 4.3990 10.3367 -1.1421 21 7 7.0075 6.2280 0.0018 22 6 7.0845 4.9166 0.0011 23 6 8.3260 4.1057 0.0001 24 6 8.3730 2.8986 0.6956 25 6 9.5288 2.1451 0.6880 26 6 10.6448 2.5918 -0.0009 27 9 11.7760 1.8530 -0.0018 28 6 10.6043 3.7936 -0.6893 29 6 9.4511 4.5509 -0.6919 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.9564 0.7804 -0.8891 34 1 3.9557 0.7807 0.8907 35 1 3.3138 3.3829 0.0006 36 1 3.8051 5.5007 0.0115 37 1 5.4626 8.4762 -0.9275 38 1 4.0880 7.9899 0.0935 39 1 5.7646 11.6403 2.5380 40 1 7.5048 2.5517 1.2363 41 1 9.5649 1.2080 1.2235 42 1 11.4767 4.1380 -1.2246 43 1 9.4203 5.4873 -1.2290 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006634579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:00 Heat of formation + Delta-G solvation = -76.885462 kcal Electronic energy + Delta-G solvation = -30925.149357 eV Core-core repulsion = 26272.304460 eV Total energy + Delta-G solvation = -4652.844897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.127 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.87827 -42.21476 -41.63409 -40.09948 -39.66220 -37.71922 -35.69288 -35.55614 -34.03138 -32.27087 -31.98643 -31.33340 -30.02262 -29.05701 -27.57341 -25.17311 -24.35111 -23.91435 -22.90662 -22.17921 -21.20301 -20.89313 -19.36560 -19.11130 -18.68481 -18.38727 -17.76308 -17.61458 -17.17244 -17.09811 -16.74284 -16.56354 -16.50585 -16.22871 -15.94742 -15.58198 -15.19577 -15.01221 -14.67955 -14.57870 -14.47300 -14.25702 -14.13215 -14.11196 -13.75189 -13.51001 -13.37628 -12.99610 -12.95263 -12.90601 -12.58557 -12.20039 -11.99207 -11.84179 -11.82331 -11.75421 -11.61015 -10.98967 -10.89111 -10.70044 -10.24978 -9.97348 -9.70810 -9.16895 -8.38834 -6.50435 -0.13128 0.36337 0.60681 1.01473 1.27342 1.34492 1.36983 1.39013 1.47574 1.63973 2.27571 2.34429 2.37813 2.75967 2.93772 3.25929 3.35667 3.55417 3.63483 3.87529 3.97884 4.03368 4.24662 4.28928 4.31115 4.32020 4.37764 4.38240 4.44062 4.49501 4.61979 4.74513 4.77393 4.92984 5.03396 5.11059 5.14403 5.21162 5.24917 5.34070 5.48714 5.60911 5.81467 5.92789 6.21867 6.42647 6.55002 6.56463 6.74268 7.12428 7.21227 8.78091 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.004930 B = 0.003811 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5678.092435 B = 7344.549220 C =12638.682768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.465 3.535 4 O -0.530 6.530 5 C 0.132 3.868 6 N -0.718 5.718 7 C 0.613 3.387 8 O -0.554 6.554 9 C -0.315 4.315 10 C 0.116 3.884 11 N -0.332 5.332 12 C 0.230 3.770 13 C -0.549 4.549 14 H 0.028 0.972 15 C 0.017 3.983 16 N -0.941 5.941 17 Si 0.953 3.047 18 H -0.252 1.252 19 H -0.284 1.284 20 H -0.236 1.236 21 N -0.305 5.305 22 C 0.138 3.862 23 C -0.045 4.045 24 C -0.033 4.033 25 C -0.158 4.158 26 C 0.098 3.902 27 F -0.142 7.142 28 C -0.160 4.160 29 C -0.071 4.071 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.413 0.587 36 H 0.223 0.777 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.272 0.728 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 -22.304 -7.966 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.309 3.691 4 O -0.419 6.419 5 C 0.007 3.993 6 N -0.374 5.374 7 C 0.403 3.597 8 O -0.434 6.434 9 C -0.331 4.331 10 C -0.036 4.036 11 N -0.108 5.108 12 C 0.111 3.889 13 C -0.587 4.587 14 H 0.046 0.954 15 C -0.183 4.183 16 N -0.579 5.579 17 Si 0.774 3.226 18 H -0.176 1.176 19 H -0.210 1.210 20 H -0.159 1.159 21 N -0.125 5.125 22 C -0.030 4.030 23 C -0.047 4.047 24 C -0.052 4.052 25 C -0.177 4.177 26 C 0.078 3.922 27 F -0.120 7.120 28 C -0.179 4.179 29 C -0.090 4.090 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.251 0.749 36 H 0.239 0.761 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.167 0.833 41 H 0.175 0.825 42 H 0.175 0.825 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.303 -21.221 -7.879 23.785 hybrid contribution -0.981 0.708 0.092 1.213 sum -8.284 -20.513 -7.786 23.453 Atomic orbital electron populations 1.23607 0.74145 1.05924 1.02752 1.86474 1.25332 1.31823 1.83440 1.23674 0.92083 0.81730 0.71588 1.90688 1.67436 1.37163 1.46622 1.20725 0.86300 0.84374 1.07858 1.45473 1.07144 1.08110 1.76712 1.16813 0.81618 0.86472 0.74773 1.90717 1.51172 1.49536 1.51975 1.21055 0.91578 0.93293 1.27182 1.23657 0.99602 0.85165 0.95163 1.48643 1.02943 1.08037 1.51146 1.20097 0.96628 0.74277 0.97923 1.21170 1.29230 0.96875 1.11451 0.95368 1.25899 0.97808 0.97518 0.97047 1.70050 1.45348 1.11359 1.31176 0.85657 0.79087 0.77911 0.79981 1.17623 1.20976 1.15913 1.77466 0.97994 1.12997 1.24010 1.22075 0.92990 0.89861 0.98096 1.17931 0.90448 0.94934 1.01430 1.21427 0.97486 0.90957 0.95320 1.21228 0.91616 1.02512 1.02338 1.17932 0.82935 0.91240 1.00072 1.91480 1.49265 1.76211 1.95090 1.21146 0.99909 0.94258 1.02573 1.21141 0.91289 0.99209 0.97370 0.91807 0.91708 0.84916 0.85470 0.85470 0.74871 0.76091 0.92930 0.89314 0.91860 0.83257 0.82469 0.82480 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.36 -4.80 10.56 -51.32 -0.54 -5.34 16 3 C 0.47 7.51 8.03 71.24 0.57 8.08 16 4 O -0.53 -11.31 15.42 21.95 0.34 -10.97 16 5 C 0.13 1.94 6.27 85.63 0.54 2.48 16 6 N -0.72 -14.26 5.52 -470.25 -2.59 -16.86 16 7 C 0.61 16.44 7.67 86.62 0.66 17.10 16 8 O -0.55 -16.32 12.45 -4.09 -0.05 -16.37 16 9 C -0.32 -10.10 6.26 -18.78 -0.12 -10.22 16 10 C 0.12 3.56 10.89 84.28 0.92 4.48 16 11 N -0.33 -13.31 3.62 -350.16 -1.27 -14.58 16 12 C 0.23 9.71 5.28 85.63 0.45 10.16 16 13 C -0.55 -30.14 9.76 25.60 0.25 -29.89 16 14 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 15 C 0.02 0.90 5.47 84.65 0.46 1.36 16 16 N -0.94 -56.68 13.96 21.45 0.30 -56.38 16 17 Si 0.95 38.78 27.47 68.60 1.88 40.66 16 18 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 19 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.24 -8.49 6.54 99.48 0.65 -7.84 16 21 N -0.30 -13.37 12.27 -44.53 -0.55 -13.92 16 22 C 0.14 5.22 6.94 44.07 0.31 5.53 16 23 C -0.05 -1.54 5.73 -20.05 -0.11 -1.66 16 24 C -0.03 -0.99 7.77 22.48 0.17 -0.82 16 25 C -0.16 -4.15 10.01 22.28 0.22 -3.93 16 26 C 0.10 2.60 7.30 22.42 0.16 2.76 16 27 F -0.14 -3.64 17.26 44.97 0.78 -2.86 16 28 C -0.16 -4.24 10.01 22.28 0.22 -4.02 16 29 C -0.07 -2.20 9.76 22.48 0.22 -1.98 16 30 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 31 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 32 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.41 7.67 6.39 -92.71 -0.59 7.08 16 36 H 0.22 4.46 7.48 -2.91 -0.02 4.44 16 37 H 0.05 2.18 7.20 -2.39 -0.02 2.16 16 38 H 0.09 3.10 7.47 -2.38 -0.02 3.08 16 39 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 40 H 0.15 4.56 5.66 -2.91 -0.02 4.54 16 41 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 42 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 43 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -75.48 382.43 4.86 -70.62 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.44 Total: 25.10 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 6.13 Total: 0.90 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -4.11 Total: -101.73 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.25 Total: -32.68 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 1.88 Total: 40.66 kcal Total: -75.48 4.86 -70.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006634579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.269 kcal (2) G-P(sol) polarization free energy of solvation -75.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds