Wall clock time and date at job start Tue Mar 31 2020 05:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 116.99915 * 2 1 4 4 C 1.38795 * 120.02973 * 0.02562 * 3 2 1 5 5 C 1.38153 * 120.05592 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.10850 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.97273 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.67391 * 165.36206 * 7 6 5 9 9 C 1.53257 * 109.57252 * 285.67453 * 7 6 5 10 10 H 1.09001 * 109.54309 * 185.58889 * 9 7 6 11 11 C 1.53030 * 109.34429 * 305.65122 * 9 7 6 12 12 C 1.52408 * 109.86721 * 179.33473 * 11 9 7 13 13 C 1.53012 * 109.46926 * 300.12983 * 12 11 9 14 14 C 1.52976 * 109.39292 * 60.03295 * 13 12 11 15 15 C 1.53026 * 109.56986 * 299.90031 * 14 13 12 16 16 O 1.42903 * 109.57593 * 299.70871 * 15 14 13 17 17 C 1.53109 * 109.19705 * 179.78048 * 15 14 13 18 18 C 1.53163 * 109.37813 * 178.74721 * 17 15 14 19 19 N 1.46888 * 109.79283 * 45.18316 * 7 6 5 20 20 C 1.36936 * 120.66246 * 113.76159 * 19 7 6 21 21 H 1.08003 * 119.99855 * 27.33328 * 20 19 7 22 22 C 1.38812 * 120.00272 * 207.34266 * 20 19 7 23 23 N 1.31618 * 119.99880 * 16.32449 * 22 20 19 24 24 Si 1.86803 * 119.99931 * 196.33088 * 22 20 19 25 25 H 1.48495 * 109.47073 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47017 * 119.99841 * 24 22 20 27 27 H 1.48503 * 109.46986 * 239.99306 * 24 22 20 28 28 C 1.38755 * 120.05386 * 0.25629 * 6 5 4 29 29 O 1.35892 * 120.02411 * 179.72297 * 28 6 5 30 30 C 1.42901 * 117.00086 * 180.02562 * 29 28 6 31 31 C 1.38617 * 120.02496 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46853 * 59.99847 * 1 2 3 33 33 H 1.09006 * 109.46931 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47087 * 300.00086 * 1 2 3 35 35 H 1.07997 * 119.96858 * 359.97438 * 4 3 2 36 36 H 1.07995 * 119.94434 * 179.97438 * 5 4 3 37 37 H 1.08997 * 109.45420 * 299.37406 * 11 9 7 38 38 H 1.09005 * 109.45478 * 59.30724 * 11 9 7 39 39 H 1.09004 * 109.55872 * 180.02562 * 12 11 9 40 40 H 1.08999 * 109.34861 * 60.07159 * 12 11 9 41 41 H 1.09004 * 109.48509 * 300.05918 * 13 12 11 42 42 H 1.08998 * 109.48638 * 180.02562 * 13 12 11 43 43 H 1.09001 * 109.45486 * 179.86670 * 14 13 12 44 44 H 1.08997 * 109.45193 * 59.93226 * 14 13 12 45 45 H 0.96703 * 113.99971 * 300.13448 * 16 15 14 46 46 H 1.08998 * 109.48133 * 298.71916 * 17 15 14 47 47 H 1.08995 * 109.48313 * 58.75550 * 17 15 14 48 48 H 1.08996 * 109.59881 * 174.52836 * 18 17 15 49 49 H 1.08997 * 109.59938 * 295.00034 * 18 17 15 50 50 H 0.97006 * 119.99692 * 180.02562 * 23 22 20 51 51 H 1.08994 * 109.47523 * 180.02562 * 30 29 28 52 52 H 1.09003 * 109.46681 * 300.00205 * 30 29 28 53 53 H 1.09000 * 109.47166 * 59.99630 * 30 29 28 54 54 H 1.07995 * 120.05688 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2906 2.3753 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2972 3.6821 0.0016 7 6 3.9775 5.0268 0.0016 8 1 5.0291 4.9060 0.2614 9 6 3.8617 5.6607 -1.3889 10 1 4.4374 6.5859 -1.4169 11 6 4.4057 4.6872 -2.4368 12 6 4.2810 5.2995 -3.8268 13 6 2.8094 5.5950 -4.1238 14 6 2.2684 6.5771 -3.0832 15 6 2.3914 5.9636 -1.6867 16 8 1.6336 4.7535 -1.6270 17 6 1.8529 6.9553 -0.6519 18 6 1.9451 6.3329 0.7445 19 7 3.3324 5.9106 0.9816 20 6 4.0105 6.3330 2.0937 21 1 5.0873 6.4134 2.0715 22 6 3.3140 6.6577 3.2497 23 7 2.0661 6.2665 3.3980 24 14 4.1478 7.6502 4.5948 25 1 5.5408 7.9639 4.1873 26 1 3.3992 8.9138 4.8139 27 1 4.1662 6.8614 5.8529 28 6 4.0567 2.5209 -0.0038 29 8 5.4136 2.5960 -0.0089 30 6 6.1317 1.3605 -0.0148 31 6 3.4302 1.2840 0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 0.2121 2.3187 0.0005 36 1 1.3277 4.5114 0.0011 37 1 5.4548 4.4778 -2.2278 38 1 3.8362 3.7584 -2.3997 39 1 4.6693 4.6020 -4.5690 40 1 4.8530 6.2265 -3.8657 41 1 2.2368 4.6684 -4.0814 42 1 2.7198 6.0325 -5.1181 43 1 1.2207 6.7902 -3.2952 44 1 2.8424 7.5028 -3.1249 45 1 0.6905 4.8707 -1.8060 46 1 2.4452 7.8698 -0.6823 47 1 0.8125 7.1882 -0.8786 48 1 1.6542 7.0697 1.4931 49 1 1.2846 5.4679 0.8036 50 1 1.5793 6.4937 4.2056 51 1 7.2027 1.5627 -0.0181 52 1 5.8734 0.7860 0.8747 53 1 5.8664 0.7904 -0.9052 54 1 4.0197 0.3791 0.0014 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006642151.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:35 Heat of formation + Delta-G solvation = -49.570390 kcal Electronic energy + Delta-G solvation = -36878.539933 eV Core-core repulsion = 32589.713249 eV Total energy + Delta-G solvation = -4288.826684 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.10333 -40.64143 -39.68298 -37.63243 -36.69320 -36.26405 -34.05283 -33.00095 -31.32204 -31.03516 -30.58532 -29.52515 -28.09963 -27.96797 -26.47414 -24.55707 -23.56260 -23.35519 -22.59427 -22.24635 -20.75365 -20.22058 -19.41748 -18.62216 -17.60955 -17.13406 -16.99901 -16.74412 -16.71733 -16.49769 -16.29066 -16.15833 -15.87489 -15.74672 -15.38106 -15.23766 -14.54452 -14.45636 -14.19312 -13.91546 -13.76143 -13.53326 -13.40002 -13.21902 -13.08680 -12.84922 -12.78905 -12.65245 -12.59700 -12.46689 -12.27683 -12.24113 -12.09687 -12.04499 -11.94452 -11.66408 -11.63274 -11.42045 -11.23906 -11.19549 -11.00856 -10.55688 -10.41555 -9.77365 -8.92012 -8.53519 -8.47551 -7.79323 -5.21570 0.79317 0.83523 1.44720 1.47382 1.56868 2.40157 2.53979 2.69442 3.03320 3.34468 3.61364 3.80967 3.90413 3.96249 4.08561 4.14279 4.26359 4.30205 4.34798 4.36737 4.41189 4.44446 4.45312 4.52271 4.53104 4.65763 4.68347 4.72567 4.72938 4.75547 4.80540 4.85747 4.89636 4.94841 5.01871 5.07832 5.10653 5.17547 5.22681 5.26070 5.39355 5.43891 5.46110 5.56546 5.59171 5.61925 5.68318 5.72748 5.76235 5.92597 6.06028 6.12142 6.47350 6.54161 6.77020 7.04229 7.24481 7.97299 8.47279 9.24468 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.007614 B = 0.005377 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3676.678107 B = 5206.236968 C = 6456.822960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.339 6.339 3 C 0.146 3.854 4 C -0.278 4.278 5 C 0.022 3.978 6 C -0.161 4.161 7 C 0.226 3.774 8 H 0.037 0.963 9 C -0.067 4.067 10 H 0.059 0.941 11 C -0.095 4.095 12 C -0.114 4.114 13 C -0.106 4.106 14 C -0.134 4.134 15 C 0.148 3.852 16 O -0.527 6.527 17 C -0.160 4.160 18 C 0.159 3.841 19 N -0.591 5.591 20 C -0.253 4.253 21 H 0.053 0.947 22 C -0.043 4.043 23 N -0.925 5.925 24 Si 0.956 3.044 25 H -0.273 1.273 26 H -0.287 1.287 27 H -0.297 1.297 28 C 0.151 3.849 29 O -0.331 6.331 30 C 0.023 3.977 31 C -0.283 4.283 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.053 0.947 35 H 0.136 0.864 36 H 0.184 0.816 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.372 0.628 46 H 0.054 0.946 47 H 0.080 0.920 48 H 0.052 0.948 49 H 0.037 0.963 50 H 0.247 0.753 51 H 0.117 0.883 52 H 0.050 0.950 53 H 0.063 0.937 54 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.811 -6.552 -15.498 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.254 6.254 3 C 0.101 3.899 4 C -0.297 4.297 5 C 0.005 3.995 6 C -0.164 4.164 7 C 0.119 3.881 8 H 0.055 0.945 9 C -0.087 4.087 10 H 0.077 0.923 11 C -0.133 4.133 12 C -0.151 4.151 13 C -0.143 4.143 14 C -0.172 4.172 15 C 0.108 3.892 16 O -0.337 6.337 17 C -0.199 4.199 18 C 0.035 3.965 19 N -0.312 5.312 20 C -0.384 4.384 21 H 0.071 0.929 22 C -0.239 4.239 23 N -0.571 5.571 24 Si 0.785 3.215 25 H -0.198 1.198 26 H -0.214 1.214 27 H -0.224 1.224 28 C 0.105 3.895 29 O -0.245 6.245 30 C -0.071 4.071 31 C -0.302 4.302 32 H 0.083 0.917 33 H 0.138 0.862 34 H 0.071 0.929 35 H 0.153 0.847 36 H 0.200 0.800 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.223 0.777 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.057 0.943 51 H 0.135 0.865 52 H 0.069 0.931 53 H 0.082 0.918 54 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.098 -6.763 -15.220 16.786 hybrid contribution -0.064 0.450 1.341 1.416 sum -2.162 -6.313 -13.878 15.399 Atomic orbital electron populations 1.23243 0.76817 1.05071 1.01915 1.85942 1.23233 1.27221 1.88977 1.18742 0.91569 0.84442 0.95161 1.21284 1.00169 0.92071 1.16164 1.22088 0.93906 0.98391 0.85133 1.19797 0.93969 0.93530 1.09071 1.19218 0.93760 0.86044 0.89037 0.94498 1.21400 0.94660 0.98047 0.94619 0.92263 1.21236 0.99360 0.98394 0.94288 1.21414 0.97434 1.00483 0.95792 1.21383 0.95395 0.99383 0.98146 1.22161 1.02202 0.98771 0.94077 1.21007 0.90757 0.84282 0.93154 1.87158 1.24296 1.31927 1.90343 1.22764 1.01115 0.98839 0.97172 1.21099 0.85211 0.96970 0.93266 1.44300 1.12015 1.52560 1.22289 1.19410 0.91200 1.37408 0.90368 0.92916 1.25583 0.97476 1.02341 0.98505 1.70152 1.11294 1.48296 1.27340 0.85374 0.78333 0.78402 0.79364 1.19777 1.21359 1.22419 1.18695 0.82303 0.93127 0.95396 1.86075 1.15718 1.33912 1.88782 1.23208 0.97305 0.85092 1.01540 1.20192 0.93098 0.96866 1.20089 0.91703 0.86166 0.92878 0.84672 0.80009 0.93834 0.92615 0.91551 0.92318 0.91913 0.90890 0.90088 0.91719 0.77677 0.92766 0.90111 0.93008 0.94630 0.94330 0.86521 0.93105 0.91843 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 16 2 O -0.34 -10.67 10.49 -92.37 -0.97 -11.64 16 3 C 0.15 5.26 6.68 22.49 0.15 5.41 16 4 C -0.28 -9.78 9.04 22.38 0.20 -9.58 16 5 C 0.02 0.86 5.31 22.24 0.12 0.98 16 6 C -0.16 -6.75 3.38 -19.75 -0.07 -6.81 16 7 C 0.23 9.96 2.54 44.26 0.11 10.07 16 8 H 0.04 1.82 6.93 -2.39 -0.02 1.81 16 9 C -0.07 -2.37 1.92 -10.68 -0.02 -2.39 16 10 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 11 C -0.09 -2.95 4.59 30.41 0.14 -2.81 16 12 C -0.11 -2.73 5.91 30.40 0.18 -2.55 16 13 C -0.11 -2.22 5.79 30.59 0.18 -2.04 16 14 C -0.13 -3.00 4.89 30.59 0.15 -2.85 16 15 C 0.15 4.31 0.55 -10.73 -0.01 4.30 16 16 O -0.53 -14.72 5.02 -148.98 -0.75 -15.47 16 17 C -0.16 -5.37 5.05 30.69 0.16 -5.21 16 18 C 0.16 7.17 4.63 86.35 0.40 7.57 16 19 N -0.59 -29.45 2.67 -679.37 -1.82 -31.26 16 20 C -0.25 -14.31 9.59 84.03 0.81 -13.50 16 21 H 0.05 3.04 7.88 -2.91 -0.02 3.01 16 22 C -0.04 -2.45 4.94 84.86 0.42 -2.03 16 23 N -0.92 -54.03 11.09 21.65 0.24 -53.79 16 24 Si 0.96 46.00 29.58 68.60 2.03 48.03 16 25 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 27 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 28 C 0.15 6.07 6.14 22.49 0.14 6.21 16 29 O -0.33 -12.51 9.33 -92.34 -0.86 -13.37 16 30 C 0.02 0.62 9.81 113.37 1.11 1.73 16 31 C -0.28 -10.57 8.97 22.46 0.20 -10.37 16 32 H 0.06 1.23 7.66 -2.39 -0.02 1.22 16 33 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.05 1.16 7.66 -2.39 -0.02 1.14 16 35 H 0.14 3.97 6.29 -2.91 -0.02 3.95 16 36 H 0.18 6.91 2.15 21.93 0.05 6.96 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.92 6.32 -2.38 -0.02 1.90 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 1.39 7.70 -2.38 -0.02 1.37 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.37 7.45 8.96 -4.96 -0.04 7.40 16 46 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.05 2.72 5.97 -2.39 -0.01 2.71 16 49 H 0.04 1.66 4.50 -2.39 -0.01 1.65 16 50 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 51 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 52 H 0.05 1.34 7.65 -2.39 -0.02 1.32 16 53 H 0.06 1.49 7.67 -2.39 -0.02 1.47 16 54 H 0.13 4.37 6.30 -2.91 -0.02 4.36 16 Total: -1.00 -70.19 390.60 4.29 -65.90 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.93 Total: 33.84 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 5.48 Total: -22.24 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -1.58 Total: -85.06 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -2.58 Total: -40.48 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -70.19 4.29 -65.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006642151.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.331 kcal (2) G-P(sol) polarization free energy of solvation -70.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds