Wall clock time and date at job start Tue Mar 31 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47596 * 120.00540 * 2 1 3 5 5 C 1.53000 * 109.46886 * 64.99349 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.37319 * 125.82513 * 90.00361 * 6 5 4 8 8 C 1.50699 * 125.58728 * 359.97438 * 7 6 5 9 9 O 1.42901 * 109.47268 * 89.99672 * 8 7 6 10 10 C 1.35900 * 116.99690 * 180.02562 * 9 8 7 11 11 C 1.38729 * 120.05897 * 359.72651 * 10 9 8 12 12 C 1.38144 * 119.94426 * 179.74374 * 11 10 9 13 13 C 1.38273 * 120.05491 * 0.50826 * 12 11 10 14 14 C 1.38259 * 120.11080 * 359.77145 * 13 12 11 15 15 C 1.38153 * 120.05705 * 359.96882 * 14 13 12 16 16 N 1.29417 * 108.83510 * 180.02562 * 7 6 5 17 17 N 1.40179 * 108.13206 * 359.97438 * 16 7 6 18 18 C 1.46501 * 126.35139 * 179.97438 * 17 16 7 19 19 C 1.50698 * 109.46846 * 90.02881 * 18 17 16 20 20 H 1.07999 * 120.00564 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99962 * 179.97438 * 19 18 17 22 22 N 1.31507 * 120.00065 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99910 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47088 * 90.00025 * 23 21 19 25 25 H 1.48496 * 109.46963 * 210.00378 * 23 21 19 26 26 H 1.48507 * 109.46747 * 329.99801 * 23 21 19 27 27 C 1.34817 * 125.83138 * 269.69123 * 6 5 4 28 28 S 1.71196 * 126.30034 * 0.02562 * 27 6 5 29 29 H 1.09005 * 109.46227 * 299.99751 * 1 2 3 30 30 H 1.08996 * 109.47271 * 59.99107 * 1 2 3 31 31 H 1.08994 * 109.46948 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46731 * 240.00275 * 2 1 3 33 33 H 1.09000 * 109.47476 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47654 * 300.00659 * 3 2 1 35 35 H 1.09005 * 109.47243 * 60.00872 * 3 2 1 36 36 H 1.09001 * 109.46652 * 304.99694 * 4 2 1 37 37 H 1.08992 * 109.47514 * 184.99783 * 4 2 1 38 38 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 39 39 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 40 40 H 1.08996 * 109.47424 * 210.00233 * 8 7 6 41 41 H 1.09003 * 109.46640 * 330.00042 * 8 7 6 42 42 H 1.08003 * 120.02726 * 359.97438 * 11 10 9 43 43 H 1.08004 * 119.97411 * 180.27579 * 12 11 10 44 44 H 1.08001 * 119.94171 * 179.74047 * 13 12 11 45 45 H 1.07995 * 119.97626 * 179.97438 * 14 13 12 46 46 H 1.07993 * 120.02497 * 179.97438 * 15 14 13 47 47 H 1.09004 * 109.47029 * 210.02614 * 18 17 16 48 48 H 1.08995 * 109.47520 * 330.02877 * 18 17 16 49 49 H 0.97010 * 120.00188 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8861 2.3841 7 6 1.4393 -3.0256 3.5667 8 6 0.0588 -2.4916 3.8497 9 8 -0.9147 -3.4749 3.4926 10 6 -2.2199 -3.1494 3.6862 11 6 -2.5565 -1.9115 4.2143 12 6 -3.8842 -1.5812 4.4051 13 6 -4.8769 -2.4871 4.0800 14 6 -4.5438 -3.7237 3.5589 15 6 -3.2177 -4.0569 3.3612 16 7 2.1750 -3.6898 4.3989 17 7 3.3819 -4.0045 3.7592 18 6 4.5029 -4.7495 4.3378 19 6 4.3218 -6.2206 4.0661 20 1 3.4580 -6.5663 3.5178 21 6 5.2590 -7.1256 4.5177 22 7 5.1013 -8.4094 4.2802 23 14 6.7536 -6.5278 5.4656 24 1 6.4418 -6.5034 6.9173 25 1 7.8951 -7.4452 5.2197 26 1 7.1119 -5.1595 5.0131 27 6 3.3178 -3.4982 2.5101 28 16 4.5320 -3.6079 1.3083 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6769 1.9563 0.8901 36 1 1.6055 -0.2618 2.1369 37 1 3.1264 -0.6445 1.2950 38 1 0.5489 -2.2724 1.1419 39 1 2.0698 -2.6550 0.3000 40 1 -0.0308 -2.2603 4.9111 41 1 -0.1075 -1.5866 3.2653 42 1 -1.7813 -1.2053 4.4726 43 1 -4.1469 -0.6158 4.8121 44 1 -5.9141 -2.2285 4.2338 45 1 -5.3209 -4.4298 3.3061 46 1 -2.9581 -5.0230 2.9545 47 1 5.4359 -4.4091 3.8885 48 1 4.5349 -4.5800 5.4140 49 1 5.7608 -9.0460 4.5976 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006652638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:17 Heat of formation + Delta-G solvation = 68.485654 kcal Electronic energy + Delta-G solvation = -29979.352573 eV Core-core repulsion = 26034.857711 eV Total energy + Delta-G solvation = -3944.494862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.47114 -40.42233 -37.82393 -37.47375 -35.18915 -33.44913 -32.51657 -31.38223 -30.54375 -29.85556 -28.82912 -27.46930 -27.23250 -24.65984 -23.49776 -22.96136 -22.51400 -21.83977 -20.83005 -20.29623 -18.75153 -17.69595 -17.26044 -16.76785 -16.53430 -16.22144 -15.95733 -15.62125 -15.61207 -15.16084 -14.86928 -14.40607 -14.24413 -14.09373 -13.93090 -13.73529 -13.22420 -13.05802 -12.94463 -12.64527 -12.54007 -12.32534 -12.25022 -11.94718 -11.86943 -11.68507 -11.57549 -11.40627 -11.25881 -11.10205 -10.98954 -10.84848 -10.82408 -10.69758 -10.56345 -10.39072 -9.81174 -9.34336 -9.33287 -8.73574 -8.57099 -7.10455 -6.96078 -6.22040 -4.25742 0.99859 1.10489 1.45987 1.63707 1.83253 2.54982 2.87403 3.19433 3.20974 3.29734 3.31127 3.45671 4.09448 4.18064 4.26805 4.38693 4.47499 4.51399 4.54941 4.61712 4.66391 4.74534 4.82284 4.95932 5.04207 5.07389 5.14510 5.15714 5.22573 5.30193 5.31842 5.35810 5.39728 5.56164 5.63602 5.66961 5.74044 5.78291 5.92925 5.94128 6.05975 6.06736 6.09405 6.20546 6.33654 6.39652 6.44388 6.53850 6.93369 6.99993 7.23285 7.57477 8.25930 8.77010 9.30518 10.90427 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.007840 B = 0.003295 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3570.384067 B = 8494.832476 C =11279.472821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.130 4.130 5 C 0.113 3.887 6 N -0.489 5.489 7 C 0.234 3.766 8 C 0.151 3.849 9 O -0.305 6.305 10 C 0.132 3.868 11 C -0.209 4.209 12 C -0.080 4.080 13 C -0.158 4.158 14 C -0.080 4.080 15 C -0.146 4.146 16 N -0.236 5.236 17 N -0.327 5.327 18 C 0.239 3.761 19 C -0.537 4.537 20 H 0.079 0.921 21 C 0.085 3.915 22 N -0.883 5.883 23 Si 0.871 3.129 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.260 1.260 27 C 0.465 3.535 28 S -0.596 6.596 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.077 0.923 48 H 0.053 0.947 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.730 20.236 -2.287 28.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.169 4.169 5 C -0.008 4.008 6 N -0.191 5.191 7 C -0.046 4.046 8 C 0.073 3.927 9 O -0.217 6.217 10 C 0.087 3.913 11 C -0.228 4.228 12 C -0.098 4.098 13 C -0.177 4.177 14 C -0.098 4.098 15 C -0.165 4.165 16 N -0.059 5.059 17 N -0.117 5.117 18 C 0.122 3.878 19 C -0.576 4.576 20 H 0.098 0.902 21 C -0.119 4.119 22 N -0.519 5.519 23 Si 0.697 3.303 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.184 1.184 27 C 0.104 3.896 28 S -0.468 6.468 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.094 0.906 48 H 0.071 0.929 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.685 19.330 -2.025 26.961 hybrid contribution 0.142 0.450 0.567 0.738 sum -18.543 19.780 -1.458 27.152 Atomic orbital electron populations 1.21951 0.95205 1.01875 1.01964 1.21030 0.95676 0.96474 0.97914 1.21809 1.01417 0.95432 1.01648 1.22028 1.03297 0.92888 0.98667 1.22099 1.00141 0.92709 0.85900 1.46147 1.13512 1.46033 1.13422 1.23721 0.96333 1.00331 0.84229 1.20787 0.79272 0.89857 1.02792 1.86176 1.12871 1.41812 1.80842 1.18987 0.82771 0.93698 0.95830 1.21266 0.98086 0.96758 1.06703 1.20948 0.91990 0.99294 0.97569 1.21098 0.99516 0.94543 1.02514 1.21004 0.95170 0.96579 0.97004 1.20536 0.91123 1.00034 1.04817 1.77167 0.94085 1.13355 1.21329 1.50007 1.12710 1.41116 1.07856 1.20446 0.80412 0.92424 0.94533 1.20905 1.10993 0.87066 1.38612 0.90246 1.24680 0.97434 0.94562 0.95271 1.69850 1.35878 1.01232 1.44981 0.86920 0.83020 0.79910 0.80477 1.19723 1.20235 1.18420 1.23714 0.89110 0.86230 0.90502 1.93093 1.36681 1.79984 1.37059 0.92692 0.92386 0.92491 0.90261 0.92330 0.92523 0.92816 0.91764 0.89892 0.88645 0.86689 0.87720 0.88906 0.85370 0.85692 0.85873 0.85215 0.84889 0.90561 0.92939 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.95 37.16 0.33 -0.66 16 2 C -0.09 -0.72 2.92 -90.62 -0.26 -0.98 16 3 C -0.15 -1.05 9.19 37.15 0.34 -0.71 16 4 C -0.13 -1.27 5.01 -26.73 -0.13 -1.41 16 5 C 0.11 1.35 5.25 -4.04 -0.02 1.33 16 6 N -0.49 -7.91 2.74 -114.59 -0.31 -8.23 16 7 C 0.23 3.60 7.61 -154.19 -1.17 2.43 16 8 C 0.15 1.58 4.83 36.01 0.17 1.75 16 9 O -0.30 -3.77 10.12 -19.42 -0.20 -3.97 16 10 C 0.13 1.38 6.69 -39.22 -0.26 1.12 16 11 C -0.21 -1.72 9.04 -39.43 -0.36 -2.07 16 12 C -0.08 -0.57 10.04 -39.60 -0.40 -0.97 16 13 C -0.16 -1.14 10.04 -39.56 -0.40 -1.53 16 14 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 15 C -0.15 -1.46 9.99 -39.43 -0.39 -1.85 16 16 N -0.24 -4.60 12.53 32.97 0.41 -4.19 16 17 N -0.33 -7.35 3.61 -63.16 -0.23 -7.58 16 18 C 0.24 5.89 5.06 -5.19 -0.03 5.87 16 19 C -0.54 -15.53 9.94 -34.44 -0.34 -15.87 16 20 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 21 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 22 N -0.88 -26.97 13.96 55.43 0.77 -26.19 16 23 Si 0.87 20.87 27.47 -169.99 -4.67 16.20 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 27 C 0.46 9.84 7.86 -86.73 -0.68 9.16 16 28 S -0.60 -14.13 29.61 -107.50 -3.18 -17.31 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 32 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 0.91 6.07 -51.93 -0.32 0.59 16 39 H 0.11 1.54 7.63 -51.93 -0.40 1.15 16 40 H 0.10 0.91 7.65 -51.93 -0.40 0.51 16 41 H 0.09 0.66 7.24 -51.93 -0.38 0.28 16 42 H 0.13 0.78 6.30 -52.48 -0.33 0.45 16 43 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.08 1.93 6.76 -51.93 -0.35 1.57 16 48 H 0.05 1.22 7.57 -51.93 -0.39 0.82 16 49 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 418.24 15.07 6.30 6.30 Total: -1.00 -35.79 418.24 -12.76 -48.55 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.56 Total: -0.52 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -4.10 Total: -3.07 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.64 Total: -46.19 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.20 Total: -3.97 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: -14.13 SS G_CDS: -3.18 Total: -17.31 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.79 -12.76 -48.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006652638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.038 kcal (2) G-P(sol) polarization free energy of solvation -35.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds