Wall clock time and date at job start Tue Mar 31 2020 05:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 120.00037 * 2 1 4 4 C 1.50699 * 109.47160 * 269.99956 * 3 2 1 5 5 H 1.08002 * 119.99749 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00040 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00124 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99892 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47154 * 60.00417 * 8 6 4 10 10 H 1.48497 * 109.47377 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47542 * 300.00592 * 8 6 4 12 12 C 1.39239 * 120.00062 * 180.02562 * 2 1 3 13 13 C 1.39197 * 119.90771 * 359.97438 * 12 2 1 14 14 C 1.37616 * 120.09233 * 179.97438 * 13 12 2 15 15 C 1.39972 * 119.90942 * 0.02562 * 14 13 12 16 16 C 1.47014 * 120.09409 * 179.97438 * 15 14 13 17 17 C 1.34933 * 120.00138 * 179.97438 * 16 15 14 18 18 C 1.46310 * 120.00306 * 180.02562 * 17 16 15 19 19 N 1.31352 * 118.52698 * 359.97438 * 18 17 16 20 20 C 1.34632 * 121.64865 * 180.02562 * 19 18 17 21 21 C 1.39885 * 121.48118 * 180.02562 * 20 19 18 22 22 C 1.36610 * 119.80513 * 179.12682 * 21 20 19 23 23 C 1.38917 * 120.97077 * 0.85405 * 22 21 20 24 24 C 1.37801 * 120.59085 * 359.42021 * 23 22 21 25 25 C 1.39363 * 119.43261 * 0.02562 * 24 23 22 26 26 C 1.47006 * 121.79913 * 180.02562 * 25 24 23 27 27 O 1.21723 * 121.23294 * 359.97438 * 26 25 24 28 28 N 1.35332 * 117.53311 * 179.70515 * 26 25 24 29 29 H 0.97000 * 119.82483 * 180.29820 * 28 26 25 30 30 C 1.39974 * 119.81429 * 0.24973 * 15 14 13 31 31 C 1.37618 * 119.90529 * 359.49277 * 30 15 14 32 32 H 1.09000 * 109.46586 * 270.00442 * 1 2 3 33 33 H 1.09004 * 109.47050 * 29.99820 * 1 2 3 34 34 H 1.08990 * 109.46827 * 150.00301 * 1 2 3 35 35 H 1.09001 * 109.47072 * 29.99806 * 3 2 1 36 36 H 1.08996 * 109.47114 * 149.99854 * 3 2 1 37 37 H 0.97002 * 119.99955 * 180.02562 * 7 6 4 38 38 H 1.08002 * 119.95201 * 359.96108 * 13 12 2 39 39 H 1.08008 * 120.04480 * 180.02562 * 14 13 12 40 40 H 1.07998 * 119.99763 * 0.02562 * 16 15 14 41 41 H 1.07998 * 120.00099 * 0.02562 * 17 16 15 42 42 H 1.08002 * 120.09771 * 359.96146 * 21 20 19 43 43 H 1.08007 * 119.51585 * 180.27341 * 22 21 20 44 44 H 1.07998 * 119.70256 * 179.44893 * 23 22 21 45 45 H 1.08008 * 120.28099 * 180.02562 * 24 23 22 46 46 H 1.08002 * 120.04773 * 179.72522 * 30 15 14 47 47 H 1.08000 * 119.96009 * 180.23100 * 31 30 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4168 -3.4339 9 1 2.1407 3.5936 -4.1347 10 1 4.1804 4.7029 -3.4340 11 1 4.2413 2.3821 -4.1333 12 6 2.1612 -1.2058 -0.0005 13 6 1.4633 -2.4102 -0.0005 14 6 2.1476 -3.6042 -0.0016 15 6 3.5473 -3.6065 -0.0021 16 6 4.2824 -4.8796 -0.0027 17 6 5.6317 -4.8797 -0.0038 18 6 6.3633 -6.1467 -0.0049 19 7 5.6776 -7.2670 -0.0043 20 6 6.2863 -8.4679 -0.0048 21 6 5.5525 -9.6588 -0.0048 22 6 6.2054 -10.8587 -0.0233 23 6 7.5934 -10.9173 -0.0246 24 6 8.3441 -9.7618 -0.0191 25 6 7.6993 -8.5263 -0.0117 26 6 8.4486 -7.2615 -0.0061 27 8 9.6658 -7.2490 -0.0074 28 7 7.7350 -6.1116 -0.0052 29 1 8.1957 -5.2580 -0.0060 30 6 4.2452 -2.3932 0.0037 31 6 3.5533 -1.2036 -0.0006 32 1 -0.3632 0.0001 1.0277 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3632 -0.8899 -0.5137 35 1 1.6085 2.0284 0.5138 36 1 3.1499 1.1384 0.5138 37 1 4.0296 4.4444 -0.8505 38 1 0.3833 -2.4076 0.0005 39 1 1.6053 -4.5383 -0.0020 40 1 3.7424 -5.8149 -0.0031 41 1 6.1717 -3.9444 -0.0038 42 1 4.4729 -9.6298 -0.0037 43 1 5.6342 -11.7753 -0.0277 44 1 8.0884 -11.8771 -0.0304 45 1 9.4229 -9.8132 -0.0205 46 1 5.3252 -2.3905 0.0078 47 1 4.0909 -0.2669 0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006653872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:25 Heat of formation + Delta-G solvation = 60.636367 kcal Electronic energy + Delta-G solvation = -29395.257664 eV Core-core repulsion = 25314.978481 eV Total energy + Delta-G solvation = -4080.279184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.60220 -39.25129 -38.60173 -37.91325 -36.25906 -33.78465 -33.65343 -32.70875 -31.52219 -30.79775 -30.23683 -28.39368 -27.90922 -25.79949 -24.86175 -24.37893 -22.81115 -22.34301 -21.96505 -20.67300 -19.58419 -19.27943 -18.90574 -17.50826 -16.95517 -16.63049 -16.01278 -15.97115 -15.58258 -15.25279 -15.03472 -14.77940 -14.54514 -14.33835 -14.10346 -13.98493 -13.73637 -13.60039 -13.22182 -12.88438 -12.84651 -12.39077 -12.35067 -12.26442 -12.10268 -12.01036 -11.56603 -11.38780 -11.26774 -11.08224 -10.80899 -10.59076 -10.54239 -10.50841 -10.37823 -10.13790 -10.02002 -9.77444 -9.44423 -8.86640 -8.63882 -8.58768 -8.00742 -6.59860 -6.16459 -4.31731 0.02118 0.55861 1.25045 1.90173 2.04419 2.44984 2.47963 2.97772 3.19867 3.25311 3.27862 3.74379 3.82876 3.88440 4.02422 4.28524 4.37289 4.41359 4.62229 4.71567 4.94894 4.98470 5.08052 5.08946 5.22812 5.27115 5.30006 5.43136 5.58442 5.65828 5.71717 5.78355 5.86003 5.87061 5.91810 6.06544 6.11493 6.18370 6.20829 6.25777 6.34647 6.35989 6.40296 6.56623 6.72172 6.79404 6.94558 7.02129 7.15908 7.29670 7.51285 7.66108 7.73287 7.95548 8.01371 8.19345 8.75760 9.35802 10.82485 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.001763 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.690186 B =15877.087936 C =17192.389125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.600 5.600 3 C 0.244 3.756 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.264 3.736 13 C -0.231 4.231 14 C -0.031 4.031 15 C -0.190 4.190 16 C 0.055 3.945 17 C -0.228 4.228 18 C 0.458 3.542 19 N -0.542 5.542 20 C 0.179 3.821 21 C -0.122 4.122 22 C -0.070 4.070 23 C -0.154 4.154 24 C -0.036 4.036 25 C -0.217 4.217 26 C 0.553 3.447 27 O -0.520 6.520 28 N -0.653 5.653 29 H 0.420 0.580 30 C -0.039 4.039 31 C -0.196 4.196 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.039 0.961 37 H 0.266 0.734 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.119 0.881 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.191 -22.873 3.110 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.301 5.301 3 C 0.124 3.876 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.153 3.847 13 C -0.254 4.254 14 C -0.050 4.050 15 C -0.193 4.193 16 C 0.033 3.967 17 C -0.248 4.248 18 C 0.199 3.801 19 N -0.265 5.265 20 C 0.066 3.934 21 C -0.141 4.141 22 C -0.089 4.089 23 C -0.173 4.173 24 C -0.056 4.056 25 C -0.223 4.223 26 C 0.346 3.654 27 O -0.396 6.396 28 N -0.296 5.296 29 H 0.259 0.741 30 C -0.058 4.058 31 C -0.219 4.219 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.152 0.848 46 H 0.137 0.863 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.056 -22.790 3.163 23.032 hybrid contribution 1.238 0.893 -1.039 1.846 sum 2.294 -21.897 2.124 22.119 Atomic orbital electron populations 1.21605 0.80962 1.02453 1.00254 1.47272 1.04974 1.04998 1.72885 1.19420 0.92247 0.78496 0.97397 1.21473 1.37088 1.06728 0.92315 0.92180 1.24955 0.95221 0.96178 0.97562 1.69908 1.37909 1.14329 1.30925 0.86554 0.78520 0.77961 0.84434 1.20174 1.21109 1.20014 1.18216 0.91667 0.86133 0.88693 1.20564 0.99461 0.91201 1.14137 1.20923 0.92786 0.97083 0.94245 1.18514 0.93174 0.91991 1.15603 1.22431 0.93308 0.97075 0.83926 1.21263 0.94860 0.92175 1.16546 1.21287 0.79201 0.94367 0.85237 1.68721 1.34838 0.95774 1.27138 1.18716 0.89220 0.92186 0.93261 1.20629 1.00504 0.89893 1.03108 1.21016 0.94561 0.97864 0.95499 1.21127 0.93978 0.98188 1.04009 1.21000 1.00442 0.90445 0.93684 1.20558 0.94065 0.93947 1.13737 1.18381 0.87129 0.83867 0.76062 1.90891 1.12324 1.86692 1.49657 1.44747 1.07593 1.11536 1.65712 0.74109 1.21070 0.98950 0.91274 0.94531 1.20881 0.92550 0.99109 1.09334 0.93964 0.90989 0.92233 0.94802 0.94280 0.92414 0.86221 0.86366 0.84784 0.84445 0.84443 0.85151 0.85274 0.84786 0.86305 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.18 59.85 0.61 2.01 16 2 N -0.60 -11.49 2.98 -180.95 -0.54 -12.03 16 3 C 0.24 5.62 4.90 -5.19 -0.03 5.60 16 4 C -0.54 -13.72 9.39 -34.44 -0.32 -14.04 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 7 N -0.89 -24.32 13.29 55.43 0.74 -23.59 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 12 C 0.26 4.69 6.56 -83.78 -0.55 4.14 16 13 C -0.23 -3.41 9.18 -39.45 -0.36 -3.77 16 14 C -0.03 -0.40 9.78 -39.16 -0.38 -0.79 16 15 C -0.19 -2.50 5.87 -105.04 -0.62 -3.11 16 16 C 0.06 0.61 9.41 -37.20 -0.35 0.26 16 17 C -0.23 -2.38 9.36 -37.51 -0.35 -2.73 16 18 C 0.46 5.18 7.59 -154.71 -1.17 4.01 16 19 N -0.54 -6.61 9.15 -9.03 -0.08 -6.69 16 20 C 0.18 2.13 6.61 -84.81 -0.56 1.57 16 21 C -0.12 -1.16 9.98 -39.55 -0.39 -1.55 16 22 C -0.07 -0.53 9.95 -39.92 -0.40 -0.93 16 23 C -0.15 -1.23 10.02 -39.49 -0.40 -1.63 16 24 C -0.04 -0.38 9.68 -39.32 -0.38 -0.76 16 25 C -0.22 -2.67 5.90 -104.71 -0.62 -3.29 16 26 C 0.55 7.28 7.99 -12.46 -0.10 7.18 16 27 O -0.52 -8.02 17.46 5.17 0.09 -7.93 16 28 N -0.65 -7.12 5.32 -11.18 -0.06 -7.18 16 29 H 0.42 3.58 8.76 -40.82 -0.36 3.22 16 30 C -0.04 -0.56 9.40 -39.16 -0.37 -0.93 16 31 C -0.20 -3.47 9.18 -39.45 -0.36 -3.83 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 34 H 0.06 0.79 6.17 -51.93 -0.32 0.47 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 0.95 6.17 -51.93 -0.32 0.63 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.12 1.56 6.11 -52.49 -0.32 1.23 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.13 1.39 7.34 -52.49 -0.39 1.01 16 41 H 0.14 1.23 6.06 -52.49 -0.32 0.91 16 42 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 44 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.13 1.30 7.82 -52.48 -0.41 0.89 16 46 H 0.12 1.43 6.16 -52.49 -0.32 1.11 16 47 H 0.14 2.71 6.11 -52.49 -0.32 2.38 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -30.31 398.80 -11.64 -41.95 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.57 Total: 5.14 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -7.20 Total: -11.02 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.06 Total: -49.48 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.09 Total: -7.93 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.31 -11.64 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006653872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.586 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds