Wall clock time and date at job start Tue Mar 31 2020 05:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31537 * 1 3 3 Si 1.86799 * 119.99876 * 2 1 4 4 H 1.48501 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46838 * 299.99927 * 3 2 1 6 6 H 1.48499 * 109.47363 * 59.99807 * 3 2 1 7 7 C 1.38667 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00079 * 180.02562 * 7 2 1 9 9 O 1.34787 * 119.99923 * 359.97438 * 7 2 1 10 10 C 1.35578 * 116.99972 * 185.06718 * 9 7 2 11 11 C 1.38732 * 120.16639 * 354.34917 * 10 9 7 12 12 C 1.38107 * 120.09136 * 179.97438 * 11 10 9 13 13 C 1.38560 * 120.42796 * 359.97438 * 12 11 10 14 14 C 1.37829 * 120.33304 * 0.02562 * 13 12 11 15 15 C 1.39794 * 119.90433 * 359.97438 * 14 13 12 16 16 C 1.47105 * 120.21430 * 180.02562 * 15 14 13 17 17 C 1.34571 * 119.99879 * 359.97438 * 16 15 14 18 18 C 1.47105 * 119.99879 * 179.97438 * 17 16 15 19 19 C 1.40743 * 118.90408 * 179.73175 * 18 17 16 20 20 C 1.38629 * 119.37106 * 179.70052 * 19 18 17 21 21 C 1.47797 * 121.31162 * 180.23225 * 20 19 18 22 22 O 1.21464 * 119.99666 * 185.54362 * 21 20 19 23 23 O 1.34710 * 119.99878 * 5.54325 * 21 20 19 24 24 C 1.46435 * 117.37820 * 0.56836 * 20 19 18 25 25 C 1.39850 * 121.45720 * 179.66909 * 24 20 19 26 26 C 1.36391 * 119.62463 * 180.02562 * 25 24 20 27 27 C 1.39304 * 120.81870 * 359.97438 * 26 25 24 28 28 C 1.36107 * 121.07559 * 359.97438 * 27 26 25 29 29 C 1.40761 * 119.72064 * 0.04177 * 28 27 26 30 30 N 1.32000 * 118.90422 * 359.97438 * 18 17 16 31 31 H 0.97002 * 120.00204 * 359.97438 * 1 2 3 32 32 H 1.08005 * 119.95644 * 359.95422 * 11 10 9 33 33 H 1.08001 * 119.78331 * 179.72195 * 12 11 10 34 34 H 1.07997 * 119.83354 * 180.02562 * 13 12 11 35 35 H 1.08003 * 120.05092 * 180.02562 * 14 13 12 36 36 H 1.07997 * 119.99935 * 179.97438 * 16 15 14 37 37 H 1.07997 * 120.00186 * 359.97438 * 17 16 15 38 38 H 1.08001 * 120.31747 * 359.97438 * 19 18 17 39 39 H 0.96702 * 116.99887 * 179.97438 * 23 21 20 40 40 H 1.08005 * 120.18878 * 0.04115 * 25 24 20 41 41 H 1.07993 * 119.58906 * 179.97438 * 26 25 24 42 42 H 1.07996 * 119.46328 * 180.02562 * 27 26 25 43 43 H 1.08000 * 120.14258 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7093 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3965 1.2124 7 6 2.0087 -1.2009 0.0005 8 1 3.0887 -1.2009 0.0010 9 8 1.3348 -2.3682 0.0016 10 6 2.0692 -3.5028 0.1088 11 6 3.4550 -3.4403 0.0933 12 6 4.2016 -4.5970 0.2031 13 6 3.5758 -5.8267 0.3299 14 6 2.2001 -5.9092 0.3473 15 6 1.4308 -4.7472 0.2371 16 6 -0.0379 -4.8272 0.2555 17 6 -0.6452 -6.0218 0.3781 18 6 -2.1139 -6.1018 0.3971 19 6 -2.7250 -7.3636 0.5206 20 6 -4.1084 -7.4496 0.5458 21 6 -4.7947 -8.7518 0.6791 22 8 -6.0051 -8.8114 0.5975 23 8 -4.0778 -9.8724 0.8910 24 6 -4.8630 -6.2003 0.4275 25 6 -6.2614 -6.1888 0.4360 26 6 -6.9266 -5.0034 0.3229 27 6 -6.2302 -3.8032 0.1995 28 6 -4.8694 -3.7785 0.1887 29 6 -4.1486 -4.9821 0.3029 30 7 -2.8149 -4.9882 0.2928 31 1 -0.4850 0.8400 0.0004 32 1 3.9508 -2.4858 -0.0051 33 1 5.2801 -4.5431 0.1859 34 1 4.1690 -6.7251 0.4155 35 1 1.7171 -6.8700 0.4467 36 1 -0.6289 -3.9272 0.1705 37 1 -0.0543 -6.9218 0.4627 38 1 -2.1218 -8.2560 0.5995 39 1 -4.5709 -10.7003 0.9720 40 1 -6.8116 -7.1132 0.5319 41 1 -8.0065 -4.9952 0.3291 42 1 -6.7791 -2.8773 0.1118 43 1 -4.3449 -2.8394 0.0918 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006841089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:00 Heat of formation + Delta-G solvation = -13.303867 kcal Electronic energy + Delta-G solvation = -29802.572042 eV Core-core repulsion = 25550.960723 eV Total energy + Delta-G solvation = -4251.611318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.115 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.02914 -39.84570 -39.20860 -37.39674 -36.57428 -36.40788 -33.86818 -33.27818 -32.44311 -30.80898 -30.17601 -29.14797 -28.06406 -25.83856 -25.46294 -23.66041 -23.35730 -22.30387 -21.49034 -21.01697 -19.47393 -18.45717 -18.13014 -18.00897 -17.18470 -17.00431 -16.63328 -15.95883 -15.48173 -15.09038 -14.73124 -14.66128 -14.40796 -14.28196 -14.24542 -13.84230 -13.77020 -13.60017 -13.37628 -13.20172 -12.67555 -12.54513 -12.03725 -11.95478 -11.81172 -11.71159 -11.63824 -11.54563 -11.31635 -11.03307 -10.81289 -10.80623 -10.56101 -10.51426 -10.41967 -9.89858 -9.50283 -9.32316 -8.97391 -8.73870 -8.36281 -7.75000 -7.00605 -6.58347 -4.14735 -0.09185 0.66641 1.48560 1.61091 2.27476 2.46271 2.57948 2.80629 3.06105 3.07287 3.12873 3.42243 3.85529 4.20929 4.23270 4.34897 4.56360 4.61331 4.78473 4.84482 4.96915 5.08631 5.11262 5.17461 5.30226 5.36483 5.44801 5.55608 5.61924 5.73206 5.76127 5.88430 5.94853 5.99982 6.10494 6.18795 6.22745 6.33096 6.46849 6.54773 6.58876 6.73583 6.77165 6.86234 6.97944 7.05120 7.23380 7.27972 7.42109 7.54154 7.68081 7.85126 8.07942 8.85693 9.52227 10.57705 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.002721 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.520718 B =10288.871265 C =13163.359105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.394 4.394 8 H 0.096 0.904 9 O -0.158 6.158 10 C 0.173 3.827 11 C -0.235 4.235 12 C -0.059 4.059 13 C -0.221 4.221 14 C -0.050 4.050 15 C -0.167 4.167 16 C 0.026 3.974 17 C -0.212 4.212 18 C 0.207 3.793 19 C -0.084 4.084 20 C -0.086 4.086 21 C 0.537 3.463 22 O -0.506 6.506 23 O -0.507 6.507 24 C -0.078 4.078 25 C -0.109 4.109 26 C -0.118 4.118 27 C -0.106 4.106 28 C -0.087 4.087 29 C 0.137 3.863 30 N -0.452 5.452 31 H 0.273 0.727 32 H 0.130 0.870 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.140 0.860 37 H 0.128 0.872 38 H 0.153 0.847 39 H 0.416 0.584 40 H 0.155 0.845 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.971 -13.910 1.313 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.113 0.887 9 O -0.059 6.059 10 C 0.116 3.884 11 C -0.254 4.254 12 C -0.078 4.078 13 C -0.239 4.239 14 C -0.068 4.068 15 C -0.168 4.168 16 C 0.005 3.995 17 C -0.231 4.231 18 C 0.057 3.943 19 C -0.104 4.104 20 C -0.095 4.095 21 C 0.382 3.618 22 O -0.395 6.395 23 O -0.319 6.319 24 C -0.080 4.080 25 C -0.127 4.127 26 C -0.136 4.136 27 C -0.126 4.126 28 C -0.105 4.105 29 C 0.016 3.984 30 N -0.162 5.162 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.171 0.829 39 H 0.276 0.724 40 H 0.173 0.827 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.261 -12.469 1.144 14.474 hybrid contribution -0.135 -0.513 0.124 0.545 sum -7.396 -12.982 1.267 14.995 Atomic orbital electron populations 1.70043 1.05964 1.27969 1.44018 1.25339 0.95884 0.98955 0.96170 0.85629 0.79191 0.80127 0.78411 1.18987 1.19993 1.19977 1.21456 0.91997 0.80575 1.52979 0.88708 1.83900 1.34638 1.11536 1.75801 1.19491 0.90131 0.87397 0.91351 1.21155 0.93567 0.99268 1.11435 1.20909 0.98657 0.92359 0.95836 1.20547 0.94308 0.97064 1.12026 1.20945 0.93510 0.96349 0.95990 1.18107 0.92443 0.91099 1.15192 1.22360 0.92596 0.98408 0.86151 1.21442 0.88773 0.98642 1.14292 1.20164 0.94807 0.87042 0.92282 1.22690 0.93419 0.99614 0.94725 1.20165 0.93439 0.89561 1.06299 1.20636 0.84863 0.84163 0.72158 1.90749 1.15183 1.86590 1.47012 1.84569 1.44833 1.18550 1.83945 1.19466 0.94519 0.91365 1.02631 1.21605 0.92676 1.00192 0.98266 1.21026 1.00243 0.92309 1.00004 1.20949 0.94054 0.98477 0.99100 1.20986 0.93713 0.97130 0.98679 1.18785 0.88978 0.92313 0.98330 1.67882 1.06744 1.29978 1.11568 0.91745 0.85223 0.87268 0.87320 0.86378 0.84257 0.85445 0.82925 0.72443 0.82738 0.85637 0.85252 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.71 13.67 55.48 0.76 -22.95 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 19.64 29.55 -169.99 -5.02 14.61 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.46 9.49 30.89 0.29 -10.16 16 8 H 0.10 2.32 5.21 -52.49 -0.27 2.05 16 9 O -0.16 -4.26 8.94 0.70 0.01 -4.25 16 10 C 0.17 3.98 6.66 -38.57 -0.26 3.73 16 11 C -0.24 -4.83 9.16 -39.45 -0.36 -5.19 16 12 C -0.06 -1.02 10.03 -39.51 -0.40 -1.41 16 13 C -0.22 -3.55 10.02 -39.61 -0.40 -3.95 16 14 C -0.05 -0.84 9.41 -39.15 -0.37 -1.21 16 15 C -0.17 -3.38 5.88 -104.89 -0.62 -4.00 16 16 C 0.03 0.51 9.17 -37.28 -0.34 0.17 16 17 C -0.21 -3.44 9.25 -37.28 -0.34 -3.79 16 18 C 0.21 3.37 6.71 -83.25 -0.56 2.81 16 19 C -0.08 -1.11 9.39 -38.49 -0.36 -1.47 16 20 C -0.09 -1.17 6.07 -102.55 -0.62 -1.80 16 21 C 0.54 6.22 8.27 34.64 0.29 6.51 16 22 O -0.51 -6.65 14.48 -19.24 -0.28 -6.93 16 23 O -0.51 -4.05 12.81 -40.52 -0.52 -4.57 16 24 C -0.08 -1.17 5.90 -104.65 -0.62 -1.79 16 25 C -0.11 -1.47 9.31 -39.64 -0.37 -1.84 16 26 C -0.12 -1.38 9.97 -39.85 -0.40 -1.78 16 27 C -0.11 -1.29 9.94 -39.95 -0.40 -1.69 16 28 C -0.09 -1.30 9.99 -39.39 -0.39 -1.70 16 29 C 0.14 2.30 6.62 -84.89 -0.56 1.74 16 30 N -0.45 -8.32 9.13 -7.78 -0.07 -8.39 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.13 2.64 5.64 -52.48 -0.30 2.35 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.12 1.60 6.17 -52.48 -0.32 1.28 16 36 H 0.14 3.20 6.94 -52.49 -0.36 2.83 16 37 H 0.13 1.67 6.07 -52.49 -0.32 1.35 16 38 H 0.15 1.54 7.72 -52.49 -0.40 1.14 16 39 H 0.42 1.27 9.11 45.56 0.42 1.68 16 40 H 0.16 2.03 5.15 -52.48 -0.27 1.76 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -32.07 377.23 -9.41 -41.48 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -3.08 Total: 11.09 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -6.88 Total: -25.79 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.69 Total: -31.34 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.79 Total: -15.75 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.07 -9.41 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006841089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.176 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds