Wall clock time and date at job start Tue Mar 31 2020 05:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31537 * 1 3 3 Si 1.86799 * 119.99876 * 2 1 4 4 H 1.48501 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46838 * 299.99927 * 3 2 1 6 6 H 1.48499 * 109.47363 * 59.99807 * 3 2 1 7 7 C 1.38667 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00079 * 180.02562 * 7 2 1 9 9 O 1.34787 * 119.99923 * 359.97438 * 7 2 1 10 10 C 1.35578 * 116.99972 * 185.06718 * 9 7 2 11 11 C 1.38732 * 120.16639 * 354.34917 * 10 9 7 12 12 C 1.38107 * 120.09136 * 179.97438 * 11 10 9 13 13 C 1.38560 * 120.42796 * 359.97438 * 12 11 10 14 14 C 1.37829 * 120.33304 * 0.02562 * 13 12 11 15 15 C 1.39794 * 119.90433 * 359.97438 * 14 13 12 16 16 C 1.47105 * 120.21430 * 180.02562 * 15 14 13 17 17 C 1.34571 * 119.99879 * 359.97438 * 16 15 14 18 18 C 1.47105 * 119.99879 * 179.97438 * 17 16 15 19 19 C 1.40743 * 118.90408 * 179.73175 * 18 17 16 20 20 C 1.38629 * 119.37106 * 179.70052 * 19 18 17 21 21 C 1.47797 * 121.31162 * 180.23225 * 20 19 18 22 22 O 1.21464 * 119.99666 * 185.54362 * 21 20 19 23 23 O 1.34710 * 119.99878 * 5.54325 * 21 20 19 24 24 C 1.46435 * 117.37820 * 0.56836 * 20 19 18 25 25 C 1.39850 * 121.45720 * 179.66909 * 24 20 19 26 26 C 1.36391 * 119.62463 * 180.02562 * 25 24 20 27 27 C 1.39304 * 120.81870 * 359.97438 * 26 25 24 28 28 C 1.36107 * 121.07559 * 359.97438 * 27 26 25 29 29 C 1.40761 * 119.72064 * 0.04177 * 28 27 26 30 30 N 1.32000 * 118.90422 * 359.97438 * 18 17 16 31 31 H 0.97002 * 120.00204 * 359.97438 * 1 2 3 32 32 H 1.08005 * 119.95644 * 359.95422 * 11 10 9 33 33 H 1.08001 * 119.78331 * 179.72195 * 12 11 10 34 34 H 1.07997 * 119.83354 * 180.02562 * 13 12 11 35 35 H 1.08003 * 120.05092 * 180.02562 * 14 13 12 36 36 H 1.07997 * 119.99935 * 179.97438 * 16 15 14 37 37 H 1.07997 * 120.00186 * 359.97438 * 17 16 15 38 38 H 1.08001 * 120.31747 * 359.97438 * 19 18 17 39 39 H 0.96702 * 116.99887 * 179.97438 * 23 21 20 40 40 H 1.08005 * 120.18878 * 0.04115 * 25 24 20 41 41 H 1.07993 * 119.58906 * 179.97438 * 26 25 24 42 42 H 1.07996 * 119.46328 * 180.02562 * 27 26 25 43 43 H 1.08000 * 120.14258 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7093 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3965 1.2124 7 6 2.0087 -1.2009 0.0005 8 1 3.0887 -1.2009 0.0010 9 8 1.3348 -2.3682 0.0016 10 6 2.0692 -3.5028 0.1088 11 6 3.4550 -3.4403 0.0933 12 6 4.2016 -4.5970 0.2031 13 6 3.5758 -5.8267 0.3299 14 6 2.2001 -5.9092 0.3473 15 6 1.4308 -4.7472 0.2371 16 6 -0.0379 -4.8272 0.2555 17 6 -0.6452 -6.0218 0.3781 18 6 -2.1139 -6.1018 0.3971 19 6 -2.7250 -7.3636 0.5206 20 6 -4.1084 -7.4496 0.5458 21 6 -4.7947 -8.7518 0.6791 22 8 -6.0051 -8.8114 0.5975 23 8 -4.0778 -9.8724 0.8910 24 6 -4.8630 -6.2003 0.4275 25 6 -6.2614 -6.1888 0.4360 26 6 -6.9266 -5.0034 0.3229 27 6 -6.2302 -3.8032 0.1995 28 6 -4.8694 -3.7785 0.1887 29 6 -4.1486 -4.9821 0.3029 30 7 -2.8149 -4.9882 0.2928 31 1 -0.4850 0.8400 0.0004 32 1 3.9508 -2.4858 -0.0051 33 1 5.2801 -4.5431 0.1859 34 1 4.1690 -6.7251 0.4155 35 1 1.7171 -6.8700 0.4467 36 1 -0.6289 -3.9272 0.1705 37 1 -0.0543 -6.9218 0.4627 38 1 -2.1218 -8.2560 0.5995 39 1 -4.5709 -10.7003 0.9720 40 1 -6.8116 -7.1132 0.5319 41 1 -8.0065 -4.9952 0.3291 42 1 -6.7791 -2.8773 0.1118 43 1 -4.3449 -2.8394 0.0918 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006841089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:59 Heat of formation + Delta-G solvation = -32.693781 kcal Electronic energy + Delta-G solvation = -29803.412851 eV Core-core repulsion = 25550.960723 eV Total energy + Delta-G solvation = -4252.452128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.115 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.06901 -40.87331 -40.73236 -38.60761 -38.10344 -37.19637 -35.19484 -34.44289 -34.31619 -32.06930 -31.27679 -30.65601 -29.43517 -27.36137 -26.91450 -24.89194 -24.41582 -23.66055 -22.81291 -22.24857 -20.76859 -19.86132 -19.37898 -19.16069 -18.59472 -18.17036 -17.78451 -16.84222 -16.81420 -16.45190 -16.18007 -16.04613 -15.66142 -15.59842 -15.42511 -15.34992 -15.21848 -14.99052 -14.40982 -14.25984 -14.24018 -13.83469 -13.55922 -13.30870 -13.02594 -13.01417 -12.76018 -12.69553 -12.61703 -12.44621 -12.34661 -12.13692 -11.89261 -11.77393 -11.62714 -11.24881 -11.20635 -10.83398 -10.50468 -9.95497 -9.52425 -9.21816 -8.51173 -8.47569 -6.14839 -1.20575 -0.49764 0.21728 0.48247 0.76515 1.30625 1.33384 1.42356 1.51606 1.67447 1.75726 2.15159 2.18472 2.87156 3.03886 3.07516 3.25193 3.26142 3.47132 3.56139 3.69658 3.85961 4.01041 4.09211 4.12822 4.19798 4.28694 4.38293 4.43053 4.43899 4.55815 4.62689 4.68144 4.72155 4.98789 5.01230 5.09149 5.09499 5.24770 5.29649 5.35160 5.39001 5.40712 5.56100 5.57020 5.76280 5.77128 5.82631 5.87350 6.03688 6.24679 6.85456 6.88150 6.95400 7.76096 8.73751 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.002721 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.520718 B =10288.871265 C =13163.359105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.020 4.020 3 Si 1.017 2.983 4 H -0.249 1.249 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.217 6.217 10 C 0.127 3.873 11 C -0.253 4.253 12 C -0.060 4.060 13 C -0.193 4.193 14 C -0.052 4.052 15 C -0.167 4.167 16 C -0.025 4.025 17 C -0.160 4.160 18 C 0.179 3.821 19 C -0.069 4.069 20 C -0.093 4.093 21 C 0.549 3.451 22 O -0.523 6.523 23 O -0.492 6.492 24 C -0.087 4.087 25 C -0.117 4.117 26 C -0.104 4.104 27 C -0.092 4.092 28 C -0.117 4.117 29 C 0.105 3.895 30 N -0.494 5.494 31 H 0.272 0.728 32 H 0.119 0.881 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.087 0.913 37 H 0.175 0.825 38 H 0.194 0.806 39 H 0.441 0.559 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 -18.669 1.854 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.491 4.491 8 H 0.121 0.879 9 O -0.122 6.122 10 C 0.075 3.925 11 C -0.272 4.272 12 C -0.078 4.078 13 C -0.211 4.211 14 C -0.069 4.069 15 C -0.168 4.168 16 C -0.046 4.046 17 C -0.179 4.179 18 C 0.028 3.972 19 C -0.089 4.089 20 C -0.101 4.101 21 C 0.394 3.606 22 O -0.414 6.414 23 O -0.306 6.306 24 C -0.089 4.089 25 C -0.135 4.135 26 C -0.122 4.122 27 C -0.111 4.111 28 C -0.136 4.136 29 C -0.015 4.015 30 N -0.203 5.203 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.164 0.836 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.106 0.894 37 H 0.192 0.808 38 H 0.211 0.789 39 H 0.304 0.696 40 H 0.181 0.819 41 H 0.183 0.817 42 H 0.178 0.822 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.835 -17.315 1.690 18.692 hybrid contribution -0.412 0.450 -0.004 0.610 sum -7.247 -16.865 1.686 18.434 Atomic orbital electron populations 1.70211 1.08016 1.28680 1.48008 1.26583 0.96794 1.02713 0.95779 0.84553 0.78380 0.74930 0.78498 1.17269 1.19419 1.19445 1.21890 0.92563 0.81383 1.53261 0.87932 1.83899 1.35970 1.12527 1.79832 1.20184 0.91590 0.87621 0.93129 1.21278 0.92843 1.00572 1.12493 1.21348 1.00434 0.91527 0.94517 1.21179 0.94306 0.98157 1.07485 1.21430 0.94023 0.96490 0.94979 1.18510 0.92907 0.91473 1.13893 1.21992 0.92609 0.98170 0.91836 1.21918 0.89207 0.98518 1.08217 1.20467 0.94888 0.88112 0.93700 1.22894 0.93621 0.99219 0.93190 1.20404 0.93747 0.90357 1.05610 1.20135 0.84342 0.84268 0.71869 1.90743 1.15863 1.86892 1.47944 1.84498 1.44458 1.18730 1.82944 1.19729 0.95534 0.91515 1.02148 1.21822 0.91973 1.01266 0.98431 1.21482 1.02150 0.91172 0.97365 1.21305 0.92779 1.00311 0.96729 1.21076 0.95274 0.96283 1.00943 1.19039 0.88694 0.93723 1.00089 1.67826 1.08211 1.32090 1.12218 0.91899 0.86363 0.83557 0.82386 0.81979 0.89434 0.80808 0.78871 0.69560 0.81894 0.81694 0.82190 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.63 13.67 21.61 0.30 -56.33 16 2 C -0.02 -1.16 5.49 84.84 0.47 -0.69 16 3 Si 1.02 43.18 29.55 68.60 2.03 45.21 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.42 -24.21 9.49 67.92 0.64 -23.57 16 8 H 0.10 5.48 5.21 -2.91 -0.02 5.46 16 9 O -0.22 -13.11 8.94 -20.42 -0.18 -13.29 16 10 C 0.13 6.29 6.66 22.93 0.15 6.44 16 11 C -0.25 -10.76 9.16 22.36 0.20 -10.55 16 12 C -0.06 -1.92 10.03 22.32 0.22 -1.70 16 13 C -0.19 -5.31 10.02 22.25 0.22 -5.09 16 14 C -0.05 -1.57 9.41 22.55 0.21 -1.35 16 15 C -0.17 -6.95 5.88 -20.04 -0.12 -7.06 16 16 C -0.02 -1.04 9.17 23.76 0.22 -0.83 16 17 C -0.16 -5.09 9.25 23.76 0.22 -4.87 16 18 C 0.18 5.86 6.71 42.06 0.28 6.14 16 19 C -0.07 -1.67 9.39 22.98 0.22 -1.45 16 20 C -0.09 -2.35 6.07 -18.52 -0.11 -2.46 16 21 C 0.55 10.99 8.27 70.35 0.58 11.57 16 22 O -0.52 -12.29 14.48 19.95 0.29 -12.00 16 23 O -0.49 -5.61 12.81 -56.19 -0.72 -6.33 16 24 C -0.09 -2.62 5.90 -19.88 -0.12 -2.73 16 25 C -0.12 -2.97 9.31 22.23 0.21 -2.77 16 26 C -0.10 -2.22 9.97 22.10 0.22 -2.00 16 27 C -0.09 -2.20 9.94 22.03 0.22 -1.99 16 28 C -0.12 -3.82 9.99 22.39 0.22 -3.60 16 29 C 0.11 3.75 6.62 40.40 0.27 4.02 16 30 N -0.49 -19.63 9.13 -178.51 -1.63 -21.26 16 31 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 32 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 33 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 34 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.16 3.41 6.17 -2.91 -0.02 3.39 16 36 H 0.09 4.63 6.94 -2.91 -0.02 4.61 16 37 H 0.17 3.75 6.07 -2.91 -0.02 3.73 16 38 H 0.19 2.92 7.72 -2.91 -0.02 2.90 16 39 H 0.44 0.58 9.11 -74.06 -0.67 -0.10 16 40 H 0.16 3.92 5.15 -2.91 -0.01 3.91 16 41 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 43 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -83.63 377.23 4.95 -78.69 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.43 Total: 29.86 kcal Atomic # 6 Polarization: -48.98 SS G_CDS: 4.43 Total: -44.55 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -1.33 Total: -77.59 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.61 Total: -31.61 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -83.63 4.95 -78.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006841089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.993 kcal (2) G-P(sol) polarization free energy of solvation -83.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds