Wall clock time and date at job start Tue Mar 31 2020 05:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50696 * 109.47180 * 2 1 4 4 N 1.30343 * 126.33017 * 304.20143 * 3 2 1 5 5 N 1.28528 * 110.07205 * 179.73179 * 4 3 2 6 6 C 1.31298 * 109.84477 * 0.41304 * 5 4 3 7 7 S 1.76205 * 126.48573 * 179.86136 * 6 5 4 8 8 C 1.76194 * 99.99941 * 4.11453 * 7 6 5 9 9 C 1.35687 * 119.99959 * 115.01940 * 8 7 6 10 10 C 1.46765 * 119.99950 * 7.34551 * 9 8 7 11 11 C 1.39961 * 120.22907 * 39.26046 * 10 9 8 12 12 C 1.37765 * 119.88828 * 179.72891 * 11 10 9 13 13 C 1.38611 * 120.35349 * 359.97438 * 12 11 10 14 14 C 1.38099 * 120.46702 * 0.02562 * 13 12 11 15 15 C 1.38736 * 120.09601 * 359.97438 * 14 13 12 16 16 O 1.35537 * 120.17251 * 179.97438 * 15 14 13 17 17 C 1.34784 * 117.00332 * 5.80668 * 16 15 14 18 18 H 1.08007 * 120.00088 * 5.38391 * 17 16 15 19 19 C 1.38657 * 120.00370 * 185.39186 * 17 16 15 20 20 N 1.31551 * 119.99907 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 119.99676 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47040 * 90.00194 * 21 19 17 23 23 H 1.48504 * 109.47107 * 209.99919 * 21 19 17 24 24 H 1.48502 * 109.47425 * 330.00328 * 21 19 17 25 25 C 1.46747 * 120.00289 * 295.01784 * 8 7 6 26 26 O 1.21595 * 119.99741 * 0.02562 * 25 8 7 27 27 O 1.34881 * 119.99946 * 180.02562 * 25 8 7 28 28 N 1.36578 * 107.02769 * 359.59890 * 6 5 4 29 29 H 0.96994 * 127.13693 * 180.24342 * 28 6 5 30 30 H 1.08992 * 109.46781 * 304.99155 * 1 2 3 31 31 H 1.09005 * 109.46864 * 64.99526 * 1 2 3 32 32 H 1.08997 * 109.46843 * 184.99370 * 1 2 3 33 33 H 1.08996 * 109.47007 * 239.99649 * 2 1 3 34 34 H 1.09005 * 109.47024 * 119.99804 * 2 1 3 35 35 H 1.07995 * 120.00017 * 187.34424 * 9 8 7 36 36 H 1.08000 * 120.05405 * 359.75191 * 11 10 9 37 37 H 1.08001 * 119.82123 * 179.97438 * 12 11 10 38 38 H 1.08002 * 119.76929 * 179.97438 * 13 12 11 39 39 H 1.07992 * 119.95276 * 180.02562 * 14 13 12 40 40 H 0.96995 * 119.99627 * 180.02562 * 20 19 17 41 41 H 0.96710 * 116.99907 * 180.02562 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7333 2.3456 -0.8685 5 7 2.3309 3.4430 -0.5677 6 6 3.0566 3.2736 0.5133 7 16 4.0561 4.4894 1.3055 8 6 3.6689 5.8954 0.3166 9 6 3.0187 6.9524 0.8653 10 6 2.7807 6.9967 2.3128 11 6 3.7651 6.5517 3.2027 12 6 3.5365 6.6016 4.5603 13 6 2.3360 7.0910 5.0509 14 6 1.3546 7.5338 4.1862 15 6 1.5647 7.4922 2.8154 16 8 0.6024 7.9260 1.9653 17 6 -0.4875 8.4975 2.5149 18 1 -0.5268 8.6718 3.5801 19 6 -1.5584 8.8617 1.7130 20 7 -2.6223 9.4191 2.2497 21 14 -1.4904 8.5608 -0.1293 22 1 -2.0418 7.2155 -0.4318 23 1 -2.2945 9.5943 -0.8297 24 1 -0.0808 8.6333 -0.5910 25 6 4.0496 5.9232 -1.1003 26 8 4.6319 4.9758 -1.5921 27 8 3.7537 6.9998 -1.8571 28 7 2.8856 1.9782 0.9109 29 1 3.2863 1.5440 1.6801 30 1 -0.3632 0.5893 0.8419 31 1 -0.3633 0.4344 -0.9314 32 1 -0.3633 -1.0237 0.0895 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.6763 7.7611 0.2368 36 1 4.7025 6.1702 2.8256 37 1 4.2967 6.2576 5.2460 38 1 2.1666 7.1255 6.1170 39 1 0.4226 7.9139 4.5775 40 1 -3.3716 9.6735 1.6887 41 1 4.0243 6.9718 -2.7852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007342551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:47 Heat of formation + Delta-G solvation = -0.701872 kcal Electronic energy + Delta-G solvation = -29410.298949 eV Core-core repulsion = 25191.137702 eV Total energy + Delta-G solvation = -4219.161247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.69533 -39.77283 -39.45383 -36.99778 -35.68867 -34.43466 -34.10079 -33.36132 -32.66894 -29.96323 -29.46180 -29.20996 -25.59425 -24.61881 -24.31549 -22.96609 -22.13798 -21.19470 -21.07762 -20.57420 -18.46110 -18.17706 -17.75099 -17.38690 -16.79521 -16.22441 -15.95757 -15.42366 -15.18527 -14.97400 -14.71016 -14.39068 -14.29170 -14.17707 -13.98976 -13.77227 -13.02583 -12.70426 -12.67218 -12.55314 -12.39102 -11.96605 -11.82153 -11.71908 -11.48388 -11.29846 -11.25059 -11.04596 -10.97876 -10.93839 -10.72600 -10.43232 -10.33102 -10.28826 -9.97127 -9.68576 -9.56368 -9.09674 -8.29349 -7.68718 -7.30332 -6.68228 -4.33027 0.57922 1.31082 1.76354 1.96660 2.10609 2.13101 2.98238 3.00584 3.12498 3.20122 3.24273 3.31639 3.51852 4.06582 4.22336 4.33674 4.44690 4.64783 4.85319 4.94873 4.99098 5.23037 5.26731 5.32756 5.46893 5.50828 5.58485 5.59300 5.76588 5.81596 5.84521 5.97943 5.99602 6.13371 6.16230 6.22751 6.41948 6.74896 6.80479 6.87588 7.00758 7.01404 7.29804 7.49454 7.73993 8.19994 8.64323 8.80852 9.20754 10.37005 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.007700 B = 0.004008 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.671229 B = 6984.761363 C = 7578.971186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.030 4.030 3 C 0.175 3.825 4 N -0.282 5.282 5 N -0.276 5.276 6 C 0.144 3.856 7 S 0.157 5.843 8 C -0.264 4.264 9 C 0.123 3.877 10 C -0.191 4.191 11 C -0.018 4.018 12 C -0.213 4.213 13 C -0.046 4.046 14 C -0.223 4.223 15 C 0.191 3.809 16 O -0.192 6.192 17 C -0.391 4.391 18 H 0.113 0.887 19 C 0.071 3.929 20 N -0.860 5.860 21 Si 0.899 3.101 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.253 1.253 25 C 0.541 3.459 26 O -0.513 6.513 27 O -0.514 6.514 28 N -0.575 5.575 29 H 0.427 0.573 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.149 0.851 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.285 0.715 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.618 -12.146 1.322 16.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 C -0.096 4.096 4 N -0.123 5.123 5 N -0.119 5.119 6 C -0.230 4.230 7 S 0.393 5.607 8 C -0.378 4.378 9 C 0.099 3.901 10 C -0.193 4.193 11 C -0.038 4.038 12 C -0.232 4.232 13 C -0.065 4.065 14 C -0.242 4.242 15 C 0.135 3.865 16 O -0.094 6.094 17 C -0.465 4.465 18 H 0.130 0.870 19 C -0.135 4.135 20 N -0.495 5.495 21 Si 0.723 3.277 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.177 1.177 25 C 0.384 3.616 26 O -0.402 6.402 27 O -0.325 6.325 28 N -0.192 5.192 29 H 0.266 0.734 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.167 0.833 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.157 0.843 40 H 0.095 0.905 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 11.398 -11.685 0.862 16.346 hybrid contribution -0.155 -0.757 -0.901 1.187 sum 11.243 -12.442 -0.039 16.770 Atomic orbital electron populations 1.21712 0.93039 1.02079 1.03566 1.19937 0.97306 0.86038 1.03675 1.25099 0.95675 0.99024 0.89806 1.73922 1.20081 0.96147 1.22183 1.74710 1.09117 1.17593 1.10510 1.27851 1.06042 0.89365 0.99727 1.83931 1.52425 0.93059 1.31301 1.22431 1.19863 1.01090 0.94450 1.22927 0.78822 0.94251 0.94085 1.17997 0.95446 1.14285 0.91564 1.20749 0.96622 0.93536 0.92942 1.20552 0.98824 1.09336 0.94502 1.21026 0.92483 0.94067 0.98926 1.21258 1.01919 1.08621 0.92434 1.19122 0.87987 0.90142 0.89276 1.83510 1.26634 1.64597 1.34677 1.20856 0.92043 1.37314 0.96332 0.87017 1.24515 0.93409 0.94921 1.00681 1.69623 1.05122 1.37311 1.37451 0.86258 0.80122 0.78818 0.82459 1.19402 1.20274 1.17690 1.20341 0.75245 0.79340 0.86709 1.90881 1.39962 1.35695 1.73673 1.84604 1.77009 1.43423 1.27502 1.44160 1.39124 1.09947 1.25943 0.73367 0.92387 0.91212 0.91600 0.88872 0.90231 0.83349 0.86676 0.86604 0.86598 0.84307 0.90463 0.73289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.88 37.16 0.37 -1.00 16 2 C -0.03 -0.27 6.56 -27.88 -0.18 -0.46 16 3 C 0.17 2.51 7.59 -154.03 -1.17 1.34 16 4 N -0.28 -5.37 12.16 32.99 0.40 -4.97 16 5 N -0.28 -5.70 10.65 30.69 0.33 -5.37 16 6 C 0.14 2.51 8.03 -88.29 -0.71 1.80 16 7 S 0.16 2.41 17.90 -107.50 -1.92 0.49 16 8 C -0.26 -4.61 5.20 -37.06 -0.19 -4.80 16 9 C 0.12 2.18 8.92 -37.05 -0.33 1.85 16 10 C -0.19 -3.43 5.38 -104.92 -0.56 -4.00 16 11 C -0.02 -0.27 7.96 -39.11 -0.31 -0.58 16 12 C -0.21 -2.98 10.02 -39.62 -0.40 -3.38 16 13 C -0.05 -0.71 10.03 -39.49 -0.40 -1.11 16 14 C -0.22 -4.21 9.12 -39.45 -0.36 -4.57 16 15 C 0.19 3.95 6.67 -38.51 -0.26 3.70 16 16 O -0.19 -4.64 8.04 0.83 0.01 -4.63 16 17 C -0.39 -10.13 9.90 30.89 0.31 -9.82 16 18 H 0.11 2.91 5.53 -52.48 -0.29 2.62 16 19 C 0.07 1.88 5.49 -17.52 -0.10 1.79 16 20 N -0.86 -23.32 13.96 55.48 0.77 -22.54 16 21 Si 0.90 21.00 28.62 -169.99 -4.86 16.14 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.25 -5.88 7.11 56.52 0.40 -5.48 16 25 C 0.54 9.59 7.62 34.17 0.26 9.85 16 26 O -0.51 -10.08 16.65 -19.34 -0.32 -10.41 16 27 O -0.51 -7.66 12.60 -40.99 -0.52 -8.17 16 28 N -0.58 -7.75 6.31 -9.92 -0.06 -7.82 16 29 H 0.43 3.88 8.96 -40.82 -0.37 3.52 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.15 2.66 7.52 -52.49 -0.39 2.27 16 36 H 0.12 1.50 6.23 -51.01 -0.32 1.19 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.14 2.75 5.71 -52.49 -0.30 2.45 16 40 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.41 4.09 9.11 45.56 0.42 4.51 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -34.23 374.80 -7.91 -42.14 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -3.35 Total: 8.89 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -4.03 Total: -9.39 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 1.44 Total: -40.70 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.83 Total: -23.21 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.86 Total: 16.14 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.92 Total: 0.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.23 -7.91 -42.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007342551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.442 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds