Wall clock time and date at job start Tue Mar 31 2020 05:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47194 * 2 1 4 4 N 1.30336 * 126.33726 * 303.08590 * 3 2 1 5 5 N 1.28532 * 110.07299 * 180.29761 * 4 3 2 6 6 C 1.31295 * 109.84587 * 359.71967 * 5 4 3 7 7 S 1.76188 * 126.48435 * 179.97438 * 6 5 4 8 8 C 1.76203 * 100.00200 * 355.40167 * 7 6 5 9 9 C 1.35467 * 120.00229 * 244.03332 * 8 7 6 10 10 C 1.47062 * 119.99718 * 352.37561 * 9 8 7 11 11 C 1.39969 * 120.14667 * 321.81015 * 10 9 8 12 12 C 1.37912 * 119.95992 * 179.80844 * 11 10 9 13 13 C 1.38300 * 120.25132 * 0.45278 * 12 11 10 14 14 C 1.39017 * 120.28796 * 359.78239 * 13 12 11 15 15 O 1.35764 * 119.97952 * 179.97438 * 14 13 12 16 16 C 1.34828 * 116.99935 * 184.17960 * 15 14 13 17 17 H 1.08001 * 120.00037 * 3.41221 * 16 15 14 18 18 C 1.38659 * 120.00014 * 183.42632 * 16 15 14 19 19 N 1.31550 * 119.99814 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99776 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47038 * 90.00455 * 20 18 16 22 22 H 1.48498 * 109.46689 * 210.00397 * 20 18 16 23 23 H 1.48495 * 109.47005 * 330.00193 * 20 18 16 24 24 C 1.38547 * 120.04055 * 359.97438 * 14 13 12 25 25 C 1.46920 * 119.99824 * 64.03297 * 8 7 6 26 26 O 1.21569 * 120.00125 * 179.97438 * 25 8 7 27 27 O 1.34858 * 119.99882 * 359.97438 * 25 8 7 28 28 N 1.36568 * 107.02932 * 359.97438 * 6 5 4 29 29 H 0.97000 * 127.14296 * 179.97438 * 28 6 5 30 30 H 1.08994 * 109.46936 * 184.97962 * 1 2 3 31 31 H 1.09000 * 109.46931 * 304.97938 * 1 2 3 32 32 H 1.09000 * 109.46830 * 64.97673 * 1 2 3 33 33 H 1.09000 * 109.47014 * 240.00295 * 2 1 3 34 34 H 1.08998 * 109.47123 * 120.00263 * 2 1 3 35 35 H 1.07994 * 119.99981 * 172.37806 * 9 8 7 36 36 H 1.08003 * 120.01614 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.87436 * 180.18610 * 12 11 10 38 38 H 1.07999 * 119.85643 * 179.75997 * 13 12 11 39 39 H 0.97009 * 119.99927 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.12822 * 179.97438 * 24 14 13 41 41 H 0.96709 * 116.99711 * 179.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7495 2.3400 -0.8797 5 7 2.3510 3.4361 -0.5815 6 6 3.0514 3.2754 0.5173 7 16 4.0429 4.4939 1.3152 8 6 3.8969 5.8137 0.1569 9 6 4.9920 6.2579 -0.5053 10 6 6.3257 5.7578 -0.1395 11 6 6.6465 5.5286 1.2036 12 6 7.8970 5.0558 1.5420 13 6 8.8404 4.8155 0.5597 14 6 8.5346 5.0441 -0.7770 15 8 9.4656 4.8066 -1.7362 16 6 9.1358 5.1302 -3.0028 17 1 8.1897 5.6085 -3.2091 18 6 10.0113 4.8489 -4.0406 19 7 9.6893 5.1642 -5.2765 20 14 11.6479 4.0220 -3.6837 21 1 11.4833 2.5478 -3.7536 22 1 12.6513 4.4563 -4.6885 23 1 12.1099 4.4047 -2.3253 24 6 7.2803 5.5143 -1.1310 25 6 2.5875 6.4323 -0.0906 26 8 2.4869 7.3432 -0.8894 27 8 1.4973 5.9897 0.5683 28 7 2.8661 1.9852 0.9247 29 1 3.2504 1.5565 1.7054 30 1 -0.3633 -1.0237 0.0892 31 1 -0.3633 0.5891 0.8420 32 1 -0.3633 0.4347 -0.9312 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.8856 6.9793 -1.3019 36 1 5.9138 5.7187 1.9740 37 1 8.1420 4.8767 2.5785 38 1 9.8190 4.4490 0.8323 39 1 10.3019 4.9677 -6.0025 40 1 7.0413 5.6927 -2.1690 41 1 0.6579 6.4282 0.3724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007342554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:51 Heat of formation + Delta-G solvation = 1.198705 kcal Electronic energy + Delta-G solvation = -28682.117450 eV Core-core repulsion = 24463.038618 eV Total energy + Delta-G solvation = -4219.078832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.85873 -39.99418 -39.39938 -37.15463 -35.99084 -34.56946 -33.94116 -33.49913 -32.45996 -30.18134 -29.68641 -29.10934 -25.61091 -24.94843 -24.48728 -23.09141 -21.82818 -21.82168 -21.22524 -20.02558 -18.76553 -18.31460 -17.97523 -17.32265 -16.85347 -16.35630 -16.03576 -15.59159 -15.44213 -14.99971 -14.89217 -14.54679 -14.24214 -14.05937 -13.95484 -13.69318 -13.37945 -12.86899 -12.66349 -12.53689 -12.36516 -12.10944 -11.96074 -11.79763 -11.60292 -11.50728 -11.39183 -11.15089 -11.03571 -10.92841 -10.88720 -10.72409 -10.49778 -10.32820 -9.91391 -9.77167 -9.60747 -8.98875 -8.35399 -7.76684 -7.40043 -6.52086 -4.20320 0.31565 1.14864 1.60701 1.85266 1.97508 2.09916 2.79976 2.85604 2.93449 3.10868 3.15323 3.18943 3.31731 4.13790 4.20336 4.23102 4.53212 4.64054 4.80215 4.86802 4.96711 5.10014 5.14622 5.17649 5.27409 5.36908 5.46642 5.47321 5.65753 5.67587 5.70920 5.82390 5.87124 5.98314 6.01072 6.28270 6.39701 6.51519 6.77216 6.85307 6.86238 6.94612 7.30551 7.62035 7.88498 7.93493 8.63418 8.81437 9.39160 10.54918 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.009736 B = 0.002894 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.309726 B = 9673.097311 C =10612.939493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.033 4.033 3 C 0.179 3.821 4 N -0.282 5.282 5 N -0.280 5.280 6 C 0.142 3.858 7 S 0.149 5.851 8 C -0.233 4.233 9 C 0.102 3.898 10 C -0.064 4.064 11 C -0.148 4.148 12 C -0.083 4.083 13 C -0.161 4.161 14 C 0.152 3.848 15 O -0.210 6.210 16 C -0.395 4.395 17 H 0.108 0.892 18 C 0.066 3.934 19 N -0.872 5.872 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.179 4.179 25 C 0.547 3.453 26 O -0.518 6.518 27 O -0.501 6.501 28 N -0.573 5.573 29 H 0.428 0.572 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.155 0.845 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.282 0.718 40 H 0.142 0.858 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.186 -6.862 17.326 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.092 4.092 4 N -0.123 5.123 5 N -0.124 5.124 6 C -0.232 4.232 7 S 0.384 5.616 8 C -0.347 4.347 9 C 0.079 3.921 10 C -0.065 4.065 11 C -0.169 4.169 12 C -0.102 4.102 13 C -0.181 4.181 14 C 0.099 3.901 15 O -0.115 6.115 16 C -0.470 4.470 17 H 0.125 0.875 18 C -0.138 4.138 19 N -0.509 5.509 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.183 1.183 24 C -0.198 4.198 25 C 0.390 3.610 26 O -0.409 6.409 27 O -0.311 6.311 28 N -0.190 5.190 29 H 0.268 0.732 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.172 0.828 36 H 0.129 0.871 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.092 0.908 40 H 0.159 0.841 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -12.688 -6.258 16.639 21.840 hybrid contribution -0.002 -0.739 -0.035 0.740 sum -12.690 -6.997 16.603 22.038 Atomic orbital electron populations 1.21699 0.93115 1.02128 1.03284 1.19970 0.97200 0.86051 1.04021 1.25119 0.95898 0.98986 0.89187 1.73926 1.19920 0.96314 1.22115 1.74692 1.09348 1.17731 1.10643 1.27826 1.05821 0.89851 0.99742 1.84390 1.52917 1.00085 1.24185 1.22429 0.93889 1.06661 1.11672 1.23085 0.90492 0.90087 0.88460 1.18606 0.91711 1.02127 0.94036 1.20684 0.96820 1.05744 0.93684 1.20540 0.92619 0.98682 0.98331 1.20457 1.00698 1.06847 0.90083 1.18936 0.88056 0.93965 0.89153 1.83600 1.37756 1.73450 1.16692 1.20760 1.07063 1.40447 0.78771 0.87518 1.24477 0.99354 0.96368 0.93633 1.69645 1.37475 1.44973 0.98786 0.86175 0.81795 0.79785 0.79127 1.19828 1.20645 1.18251 1.21415 0.92718 1.05668 1.00006 1.20195 0.84384 0.79572 0.76801 1.90910 1.86314 1.29577 1.34089 1.84615 1.19198 1.62615 1.64719 1.44173 1.39902 1.09997 1.24881 0.73214 0.91555 0.92627 0.91228 0.88591 0.90139 0.82754 0.87079 0.85935 0.85909 0.90820 0.84058 0.73245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.89 37.16 0.37 -0.64 16 2 C -0.03 -0.25 6.56 -27.88 -0.18 -0.43 16 3 C 0.18 2.17 7.59 -154.02 -1.17 1.00 16 4 N -0.28 -4.58 12.17 32.99 0.40 -4.18 16 5 N -0.28 -4.86 10.50 30.68 0.32 -4.54 16 6 C 0.14 2.05 7.98 -88.30 -0.70 1.35 16 7 S 0.15 1.91 17.84 -107.50 -1.92 0.00 16 8 C -0.23 -3.49 5.22 -37.06 -0.19 -3.69 16 9 C 0.10 1.59 9.35 -36.99 -0.35 1.24 16 10 C -0.06 -1.06 5.38 -105.10 -0.57 -1.62 16 11 C -0.15 -2.12 7.96 -39.05 -0.31 -2.43 16 12 C -0.08 -1.17 10.02 -39.68 -0.40 -1.57 16 13 C -0.16 -2.75 9.99 -39.27 -0.39 -3.15 16 14 C 0.15 3.17 6.64 -39.18 -0.26 2.91 16 15 O -0.21 -5.17 8.58 0.01 0.00 -5.17 16 16 C -0.40 -10.62 9.93 30.89 0.31 -10.31 16 17 H 0.11 2.94 5.46 -52.49 -0.29 2.65 16 18 C 0.07 1.79 5.49 -17.52 -0.10 1.70 16 19 N -0.87 -24.59 13.96 55.48 0.77 -23.81 16 20 Si 0.91 20.80 28.62 -169.99 -4.86 15.94 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 24 C -0.18 -3.53 8.90 -38.89 -0.35 -3.88 16 25 C 0.55 8.40 7.56 34.25 0.26 8.65 16 26 O -0.52 -9.15 17.06 -19.32 -0.33 -9.48 16 27 O -0.50 -6.34 12.09 -40.92 -0.49 -6.83 16 28 N -0.57 -6.41 6.31 -9.93 -0.06 -6.48 16 29 H 0.43 3.10 8.96 -40.82 -0.37 2.73 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.16 2.34 7.56 -52.49 -0.40 1.94 16 36 H 0.11 1.36 6.14 -49.06 -0.30 1.06 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.14 3.00 5.66 -52.49 -0.30 2.71 16 41 H 0.41 3.39 9.11 45.56 0.42 3.80 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -34.48 374.93 -7.88 -42.35 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -3.33 Total: 7.42 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -4.03 Total: -10.87 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 1.44 Total: -39.01 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.82 Total: -21.48 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.86 Total: 15.94 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.92 Total: 0.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.48 -7.88 -42.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007342554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.552 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds