Wall clock time and date at job start Tue Mar 31 2020 05:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47194 * 2 1 4 4 N 1.30336 * 126.33726 * 303.08590 * 3 2 1 5 5 N 1.28532 * 110.07299 * 180.29761 * 4 3 2 6 6 C 1.31295 * 109.84587 * 359.71967 * 5 4 3 7 7 S 1.76188 * 126.48435 * 179.97438 * 6 5 4 8 8 C 1.76203 * 100.00200 * 355.40167 * 7 6 5 9 9 C 1.35467 * 120.00229 * 244.03332 * 8 7 6 10 10 C 1.47062 * 119.99718 * 352.37561 * 9 8 7 11 11 C 1.39969 * 120.14667 * 321.81015 * 10 9 8 12 12 C 1.37912 * 119.95992 * 179.80844 * 11 10 9 13 13 C 1.38300 * 120.25132 * 0.45278 * 12 11 10 14 14 C 1.39017 * 120.28796 * 359.78239 * 13 12 11 15 15 O 1.35764 * 119.97952 * 179.97438 * 14 13 12 16 16 C 1.34828 * 116.99935 * 184.17960 * 15 14 13 17 17 H 1.08001 * 120.00037 * 3.41221 * 16 15 14 18 18 C 1.38659 * 120.00014 * 183.42632 * 16 15 14 19 19 N 1.31550 * 119.99814 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99776 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47038 * 90.00455 * 20 18 16 22 22 H 1.48498 * 109.46689 * 210.00397 * 20 18 16 23 23 H 1.48495 * 109.47005 * 330.00193 * 20 18 16 24 24 C 1.38547 * 120.04055 * 359.97438 * 14 13 12 25 25 C 1.46920 * 119.99824 * 64.03297 * 8 7 6 26 26 O 1.21569 * 120.00125 * 179.97438 * 25 8 7 27 27 O 1.34858 * 119.99882 * 359.97438 * 25 8 7 28 28 N 1.36568 * 107.02932 * 359.97438 * 6 5 4 29 29 H 0.97000 * 127.14296 * 179.97438 * 28 6 5 30 30 H 1.08994 * 109.46936 * 184.97962 * 1 2 3 31 31 H 1.09000 * 109.46931 * 304.97938 * 1 2 3 32 32 H 1.09000 * 109.46830 * 64.97673 * 1 2 3 33 33 H 1.09000 * 109.47014 * 240.00295 * 2 1 3 34 34 H 1.08998 * 109.47123 * 120.00263 * 2 1 3 35 35 H 1.07994 * 119.99981 * 172.37806 * 9 8 7 36 36 H 1.08003 * 120.01614 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.87436 * 180.18610 * 12 11 10 38 38 H 1.07999 * 119.85643 * 179.75997 * 13 12 11 39 39 H 0.97009 * 119.99927 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.12822 * 179.97438 * 24 14 13 41 41 H 0.96709 * 116.99711 * 179.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7495 2.3400 -0.8797 5 7 2.3510 3.4361 -0.5815 6 6 3.0514 3.2754 0.5173 7 16 4.0429 4.4939 1.3152 8 6 3.8969 5.8137 0.1569 9 6 4.9920 6.2579 -0.5053 10 6 6.3257 5.7578 -0.1395 11 6 6.6465 5.5286 1.2036 12 6 7.8970 5.0558 1.5420 13 6 8.8404 4.8155 0.5597 14 6 8.5346 5.0441 -0.7770 15 8 9.4656 4.8066 -1.7362 16 6 9.1358 5.1302 -3.0028 17 1 8.1897 5.6085 -3.2091 18 6 10.0113 4.8489 -4.0406 19 7 9.6893 5.1642 -5.2765 20 14 11.6479 4.0220 -3.6837 21 1 11.4833 2.5478 -3.7536 22 1 12.6513 4.4563 -4.6885 23 1 12.1099 4.4047 -2.3253 24 6 7.2803 5.5143 -1.1310 25 6 2.5875 6.4323 -0.0906 26 8 2.4869 7.3432 -0.8894 27 8 1.4973 5.9897 0.5683 28 7 2.8661 1.9852 0.9247 29 1 3.2504 1.5565 1.7054 30 1 -0.3633 -1.0237 0.0892 31 1 -0.3633 0.5891 0.8420 32 1 -0.3633 0.4347 -0.9312 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.8856 6.9793 -1.3019 36 1 5.9138 5.7187 1.9740 37 1 8.1420 4.8767 2.5785 38 1 9.8190 4.4490 0.8323 39 1 10.3019 4.9677 -6.0025 40 1 7.0413 5.6927 -2.1690 41 1 0.6579 6.4282 0.3724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007342554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:50 Heat of formation + Delta-G solvation = -21.688741 kcal Electronic energy + Delta-G solvation = -28683.109924 eV Core-core repulsion = 24463.038618 eV Total energy + Delta-G solvation = -4220.071306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.89934 -41.24990 -40.89959 -38.68501 -37.17309 -35.44447 -35.20279 -34.45974 -34.38155 -31.51316 -30.88828 -30.36734 -27.39623 -26.28338 -25.27474 -24.14656 -23.29136 -23.14802 -22.15888 -21.28164 -19.97872 -19.91037 -19.25370 -18.66286 -18.25881 -17.42550 -17.08933 -16.99791 -16.66763 -16.51626 -15.96294 -15.71675 -15.63598 -15.50630 -15.13532 -14.90387 -14.64277 -14.25575 -14.12499 -14.00598 -13.46979 -13.31485 -13.02849 -12.83720 -12.76317 -12.62767 -12.59828 -12.43258 -12.36366 -12.20958 -12.04834 -11.97791 -11.89351 -11.56543 -11.45818 -11.13556 -10.88892 -10.85350 -9.70932 -9.20447 -8.56005 -8.50727 -6.24838 -0.94257 0.01063 0.55571 0.61391 0.69248 0.78200 1.32824 1.36974 1.52989 1.67696 1.74278 1.94945 2.01884 2.27543 2.73228 3.04479 3.06088 3.45250 3.51738 3.89520 3.94841 4.00691 4.12990 4.15605 4.28272 4.29047 4.40707 4.49473 4.57708 4.61552 4.72333 4.88800 4.92040 4.99083 5.01957 5.10177 5.31228 5.36769 5.44226 5.45944 5.52007 5.71636 5.82041 6.09074 6.11570 6.82831 6.84907 7.53991 7.56686 8.60838 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.009736 B = 0.002894 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.309726 B = 9673.097311 C =10612.939493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.033 4.033 3 C 0.196 3.804 4 N -0.333 5.333 5 N -0.323 5.323 6 C 0.126 3.874 7 S 0.199 5.801 8 C -0.236 4.236 9 C 0.089 3.911 10 C -0.064 4.064 11 C -0.122 4.122 12 C -0.064 4.064 13 C -0.154 4.154 14 C 0.116 3.884 15 O -0.238 6.238 16 C -0.400 4.400 17 H 0.078 0.922 18 C 0.008 3.992 19 N -0.925 5.925 20 Si 0.973 3.027 21 H -0.267 1.267 22 H -0.271 1.271 23 H -0.254 1.254 24 C -0.200 4.200 25 C 0.549 3.451 26 O -0.549 6.549 27 O -0.493 6.493 28 N -0.559 5.559 29 H 0.448 0.552 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.179 0.821 38 H 0.143 0.857 39 H 0.285 0.715 40 H 0.108 0.892 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.307 -9.081 22.234 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.076 4.076 4 N -0.173 5.173 5 N -0.167 5.167 6 C -0.250 4.250 7 S 0.434 5.566 8 C -0.350 4.350 9 C 0.065 3.935 10 C -0.064 4.064 11 C -0.143 4.143 12 C -0.082 4.082 13 C -0.173 4.173 14 C 0.067 3.933 15 O -0.146 6.146 16 C -0.477 4.477 17 H 0.095 0.905 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.196 1.196 23 H -0.178 1.178 24 C -0.220 4.220 25 C 0.394 3.606 26 O -0.442 6.442 27 O -0.305 6.305 28 N -0.177 5.177 29 H 0.292 0.708 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.196 0.804 38 H 0.161 0.839 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -12.860 -8.487 21.621 26.549 hybrid contribution -0.341 -0.074 -1.210 1.260 sum -13.202 -8.561 20.410 25.771 Atomic orbital electron populations 1.21674 0.92704 1.03547 1.01934 1.20278 0.97426 0.83417 1.06131 1.25947 0.94058 0.99899 0.87681 1.73842 1.21846 0.97161 1.24425 1.74591 1.10782 1.19077 1.12237 1.27991 1.06011 0.91340 0.99650 1.83867 1.52545 0.98025 1.22209 1.22648 0.93482 1.07093 1.11758 1.22977 0.90636 0.90893 0.88995 1.18670 0.91281 1.01936 0.94558 1.21166 0.97724 1.02433 0.92970 1.21139 0.91036 0.95831 1.00169 1.20876 1.02398 1.05475 0.88536 1.19535 0.88102 0.95448 0.90202 1.83536 1.39135 1.76002 1.15894 1.20648 1.06162 1.40372 0.80472 0.90478 1.25335 1.03044 0.97307 0.93322 1.69748 1.39192 1.47775 0.99807 0.85175 0.77443 0.78761 0.79114 1.19211 1.19582 1.17779 1.21287 0.93865 1.07397 0.99426 1.20275 0.85057 0.78972 0.76336 1.90899 1.86849 1.31009 1.35453 1.84568 1.19660 1.62409 1.63882 1.44118 1.39415 1.08861 1.25326 0.70844 0.88852 0.93007 0.93439 0.88012 0.86373 0.83659 0.83793 0.80413 0.83919 0.90588 0.87426 0.71051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.89 71.98 0.71 -0.93 16 2 C -0.03 -0.40 6.56 29.85 0.20 -0.20 16 3 C 0.20 4.37 7.59 137.64 1.04 5.42 16 4 N -0.33 -10.73 12.17 -49.54 -0.60 -11.33 16 5 N -0.32 -11.14 10.50 -56.84 -0.60 -11.74 16 6 C 0.13 3.41 7.98 179.54 1.43 4.85 16 7 S 0.20 4.53 17.84 -56.49 -1.01 3.52 16 8 C -0.24 -6.91 5.22 23.90 0.12 -6.78 16 9 C 0.09 2.81 9.35 23.95 0.22 3.03 16 10 C -0.06 -2.07 5.38 -20.17 -0.11 -2.18 16 11 C -0.12 -3.02 7.96 22.61 0.18 -2.84 16 12 C -0.06 -1.46 10.02 22.21 0.22 -1.24 16 13 C -0.15 -4.81 9.99 22.47 0.22 -4.59 16 14 C 0.12 4.93 6.64 22.53 0.15 5.08 16 15 O -0.24 -12.16 8.58 -22.88 -0.20 -12.36 16 16 C -0.40 -23.04 9.93 67.92 0.67 -22.36 16 17 H 0.08 4.72 5.46 -2.91 -0.02 4.71 16 18 C 0.01 0.48 5.49 84.84 0.47 0.94 16 19 N -0.92 -55.41 13.96 21.61 0.30 -55.11 16 20 Si 0.97 44.19 28.62 68.60 1.96 46.15 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.25 -11.16 7.11 99.48 0.71 -10.46 16 24 C -0.20 -8.32 8.90 22.72 0.20 -8.12 16 25 C 0.55 16.72 7.56 70.10 0.53 17.25 16 26 O -0.55 -19.82 17.06 19.61 0.33 -19.49 16 27 O -0.49 -11.91 12.09 -57.71 -0.70 -12.61 16 28 N -0.56 -10.96 6.31 -185.32 -1.17 -12.13 16 29 H 0.45 4.71 8.96 -92.71 -0.83 3.88 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.15 4.78 7.56 -2.91 -0.02 4.76 16 36 H 0.14 2.71 6.14 -5.09 -0.03 2.67 16 37 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 39 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 40 H 0.11 5.15 5.66 -2.91 -0.02 5.13 16 41 H 0.43 6.62 9.11 -74.05 -0.67 5.95 16 Total: -1.00 -82.53 374.93 4.22 -78.31 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.39 Total: 19.46 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 6.27 Total: -12.67 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -2.07 Total: -90.31 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.56 Total: -44.45 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.96 Total: 46.15 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.01 Total: 3.52 kcal Total: -82.53 4.22 -78.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007342554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.623 kcal (2) G-P(sol) polarization free energy of solvation -82.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds