Wall clock time and date at job start Tue Mar 31 2020 05:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50703 * 109.47463 * 2 1 4 4 N 1.30339 * 126.33801 * 303.27461 * 3 2 1 5 5 N 1.28520 * 110.07726 * 180.23537 * 4 3 2 6 6 C 1.31297 * 109.84351 * 359.75322 * 5 4 3 7 7 S 1.76207 * 126.48550 * 180.02562 * 6 5 4 8 8 C 1.76201 * 99.99847 * 354.85500 * 7 6 5 9 9 C 1.35647 * 120.00166 * 114.05988 * 8 7 6 10 10 C 1.46835 * 120.00101 * 7.29074 * 9 8 7 11 11 C 1.40072 * 120.10664 * 213.98982 * 10 9 8 12 12 C 1.37607 * 119.88668 * 179.72051 * 11 10 9 13 13 C 1.39175 * 120.10853 * 0.55493 * 12 11 10 14 14 O 1.35590 * 119.89136 * 179.73982 * 13 12 11 15 15 C 1.34784 * 116.99847 * 185.56858 * 14 13 12 16 16 H 1.08001 * 119.99957 * 5.12582 * 15 14 13 17 17 C 1.38656 * 120.00086 * 185.12743 * 15 14 13 18 18 N 1.31550 * 119.99649 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47258 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47149 * 119.99722 * 19 17 15 22 22 H 1.48499 * 109.47049 * 239.99581 * 19 17 15 23 23 C 1.39173 * 120.21439 * 359.71982 * 13 12 11 24 24 C 1.37600 * 120.11015 * 0.02562 * 23 13 12 25 25 C 1.46769 * 119.99743 * 294.05392 * 8 7 6 26 26 O 1.21596 * 119.99811 * 180.02562 * 25 8 7 27 27 O 1.34885 * 120.00285 * 0.02562 * 25 8 7 28 28 N 1.36570 * 107.03123 * 0.02562 * 6 5 4 29 29 H 0.97003 * 127.14101 * 179.97438 * 28 6 5 30 30 H 1.08999 * 109.47698 * 64.98889 * 1 2 3 31 31 H 1.09003 * 109.47611 * 184.99759 * 1 2 3 32 32 H 1.09007 * 109.46844 * 304.99383 * 1 2 3 33 33 H 1.08998 * 109.47139 * 240.00237 * 2 1 3 34 34 H 1.08999 * 109.47442 * 120.00140 * 2 1 3 35 35 H 1.08005 * 120.00002 * 187.30036 * 9 8 7 36 36 H 1.08001 * 120.06002 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.94238 * 180.30139 * 12 11 10 38 38 H 0.97003 * 119.99721 * 180.02562 * 18 17 15 39 39 H 1.07999 * 119.94524 * 179.97438 * 23 13 12 40 40 H 1.08001 * 120.05513 * 180.02562 * 24 23 13 41 41 H 0.96700 * 117.00431 * 180.02562 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7467 2.3410 -0.8778 5 7 2.3481 3.4370 -0.5796 6 6 3.0518 3.2752 0.5169 7 16 4.0437 4.4936 1.3148 8 6 3.9058 5.8099 0.1515 9 6 3.2674 6.9560 0.4966 10 6 2.8325 7.1651 1.8834 11 6 1.6544 7.8740 2.1509 12 6 1.2480 8.0624 3.4521 13 6 2.0114 7.5599 4.5017 14 8 1.6095 7.7526 5.7822 15 6 2.4483 7.3438 6.7548 16 1 3.4261 6.9627 6.4997 17 6 2.0559 7.4127 8.0829 18 7 0.8651 7.8774 8.3936 19 14 3.2187 6.8468 9.4309 20 1 4.4877 6.3723 8.8230 21 1 3.5030 7.9801 10.3475 22 1 2.5901 5.7387 10.1940 23 6 3.1857 6.8599 4.2411 24 6 3.5977 6.6618 2.9432 25 6 4.4818 5.6663 -1.1907 26 8 4.3870 6.5749 -1.9933 27 8 5.1162 4.5266 -1.5341 28 7 2.8697 1.9838 0.9222 29 1 3.2569 1.5542 1.7010 30 1 -0.3634 0.4345 -0.9313 31 1 -0.3634 -1.0238 0.0895 32 1 -0.3633 0.5894 0.8419 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.0789 7.7146 -0.2487 36 1 1.0633 8.2678 1.3373 37 1 0.3372 8.6046 3.6592 38 1 0.5908 7.9259 9.3228 39 1 3.7749 6.4722 5.0589 40 1 4.5089 6.1180 2.7420 41 1 5.4795 4.4788 -2.4289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007342562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:53 Heat of formation + Delta-G solvation = -26.221310 kcal Electronic energy + Delta-G solvation = -28514.717769 eV Core-core repulsion = 24294.449916 eV Total energy + Delta-G solvation = -4220.267853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.86494 -41.14230 -40.83734 -38.68405 -37.09640 -35.36450 -34.97913 -34.42901 -34.13285 -32.00813 -30.73671 -30.07738 -27.54579 -25.77710 -25.24880 -24.14058 -23.84551 -22.84544 -22.12195 -21.14620 -20.02906 -19.73129 -19.32080 -18.87788 -18.16020 -17.34966 -17.10147 -16.64152 -16.45985 -16.32603 -16.10123 -15.74089 -15.62295 -15.51781 -15.04880 -14.80619 -14.56751 -14.44055 -13.95942 -13.61199 -13.36606 -13.25098 -13.07322 -12.81218 -12.73802 -12.63583 -12.56893 -12.44703 -12.30892 -12.19871 -12.08306 -11.93707 -11.84977 -11.48047 -11.31829 -11.05453 -10.86229 -10.62812 -9.95974 -8.93317 -8.53422 -8.52947 -6.18910 -0.76312 0.09380 0.54932 0.67677 0.83000 0.89693 1.38509 1.45449 1.56187 1.73559 1.84073 2.01911 2.09852 2.15226 2.77656 3.12046 3.37029 3.46499 3.74170 3.90202 3.94222 4.02968 4.13627 4.19263 4.28884 4.43566 4.44362 4.50279 4.59383 4.72964 4.80826 4.92401 4.93248 4.98305 5.10114 5.10379 5.15035 5.36101 5.44991 5.51233 5.56121 5.59227 5.95632 6.00319 6.08168 6.91285 6.92520 7.59227 7.65853 8.68466 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.002844 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.215606 B = 9843.743393 C =11458.868992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 C 0.193 3.807 4 N -0.329 5.329 5 N -0.319 5.319 6 C 0.132 3.868 7 S 0.162 5.838 8 C -0.268 4.268 9 C 0.125 3.875 10 C -0.196 4.196 11 C -0.017 4.017 12 C -0.207 4.207 13 C 0.148 3.852 14 O -0.212 6.212 15 C -0.413 4.413 16 H 0.112 0.888 17 C -0.017 4.017 18 N -0.911 5.911 19 Si 1.017 2.983 20 H -0.246 1.246 21 H -0.271 1.271 22 H -0.270 1.270 23 C -0.246 4.246 24 C 0.002 3.998 25 C 0.551 3.449 26 O -0.549 6.549 27 O -0.503 6.503 28 N -0.564 5.564 29 H 0.445 0.555 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.126 0.874 38 H 0.275 0.725 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.641 -14.468 -13.106 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.079 4.079 4 N -0.169 5.169 5 N -0.163 5.163 6 C -0.243 4.243 7 S 0.397 5.603 8 C -0.382 4.382 9 C 0.102 3.898 10 C -0.197 4.197 11 C -0.035 4.035 12 C -0.226 4.226 13 C 0.095 3.905 14 O -0.116 6.116 15 C -0.488 4.488 16 H 0.129 0.871 17 C -0.216 4.216 18 N -0.547 5.547 19 Si 0.836 3.164 20 H -0.169 1.169 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.266 4.266 24 C -0.019 4.019 25 C 0.396 3.604 26 O -0.443 6.443 27 O -0.316 6.316 28 N -0.182 5.182 29 H 0.288 0.712 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.180 0.820 36 H 0.176 0.824 37 H 0.144 0.856 38 H 0.084 0.916 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 7.067 -13.490 -12.979 20.010 hybrid contribution 0.426 -0.636 0.330 0.833 sum 7.493 -14.126 -12.649 20.389 Atomic orbital electron populations 1.21695 0.93202 1.03460 1.01812 1.20250 0.97008 0.83553 1.06216 1.25921 0.94254 0.99928 0.87785 1.73823 1.21473 0.97022 1.24600 1.74576 1.10653 1.18809 1.12237 1.28055 1.06140 0.90752 0.99391 1.84340 1.57992 0.98701 1.19224 1.22436 1.17460 1.01149 0.97143 1.22850 0.78750 0.93668 0.94530 1.18617 1.00255 1.09573 0.91281 1.21157 0.94103 0.92740 0.95485 1.20386 1.02851 1.08225 0.91143 1.20146 0.93008 0.91915 0.85447 1.83919 1.44906 1.70991 1.11756 1.21980 0.97815 1.44129 0.84877 0.87124 1.26608 0.98806 0.96269 0.99928 1.70173 1.20730 1.43644 1.20172 0.84545 0.77497 0.78165 0.76204 1.16891 1.19597 1.19465 1.21080 0.99664 1.07950 0.97868 1.20985 0.97957 0.92061 0.90888 1.20272 0.74022 0.79193 0.86924 1.90876 1.58802 1.42131 1.52507 1.84589 1.67836 1.38626 1.40508 1.44212 1.39474 1.09042 1.25471 0.71194 0.93032 0.88811 0.93899 0.87129 0.86891 0.81979 0.82381 0.85645 0.91556 0.84936 0.85003 0.71225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.89 71.98 0.71 -1.21 16 2 C -0.03 -0.38 6.56 29.85 0.20 -0.18 16 3 C 0.19 4.32 7.59 137.64 1.04 5.37 16 4 N -0.33 -10.23 12.17 -49.54 -0.60 -10.84 16 5 N -0.32 -10.65 11.29 -56.82 -0.64 -11.29 16 6 C 0.13 3.68 8.05 179.54 1.44 5.13 16 7 S 0.16 4.10 17.48 -56.49 -0.99 3.11 16 8 C -0.27 -7.39 5.13 23.90 0.12 -7.27 16 9 C 0.13 3.32 9.36 23.92 0.22 3.54 16 10 C -0.20 -5.75 5.48 -20.14 -0.11 -5.86 16 11 C -0.02 -0.51 9.79 22.57 0.22 -0.29 16 12 C -0.21 -7.76 9.97 22.35 0.22 -7.53 16 13 C 0.15 6.54 6.66 22.72 0.15 6.69 16 14 O -0.21 -11.52 9.74 -20.52 -0.20 -11.72 16 15 C -0.41 -21.72 9.44 67.92 0.64 -21.08 16 16 H 0.11 5.23 5.26 -2.91 -0.02 5.21 16 17 C -0.02 -0.88 5.49 84.83 0.47 -0.41 16 18 N -0.91 -52.12 13.67 21.61 0.30 -51.83 16 19 Si 1.02 39.08 29.55 68.60 2.03 41.11 16 20 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 21 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 23 C -0.25 -9.33 9.11 22.34 0.20 -9.13 16 24 C 0.00 0.07 7.96 22.57 0.18 0.25 16 25 C 0.55 15.56 7.83 70.05 0.55 16.10 16 26 O -0.55 -17.74 17.06 19.52 0.33 -17.40 16 27 O -0.50 -11.67 12.72 -58.00 -0.74 -12.41 16 28 N -0.56 -11.95 6.31 -185.30 -1.17 -13.12 16 29 H 0.44 5.98 8.96 -92.71 -0.83 5.15 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.16 3.79 7.56 -2.91 -0.02 3.77 16 36 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 37 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.13 5.01 5.68 -2.91 -0.02 5.00 16 40 H 0.13 3.48 5.68 -12.14 -0.07 3.42 16 41 H 0.43 6.03 9.11 -74.06 -0.67 5.36 16 Total: -1.00 -77.36 377.02 4.16 -73.20 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -0.42 Total: 27.07 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 6.27 Total: -15.88 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -2.12 Total: -87.08 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.60 Total: -41.53 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -0.99 Total: 3.11 kcal Total: -77.36 4.16 -73.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007342562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.978 kcal (2) G-P(sol) polarization free energy of solvation -77.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds