Wall clock time and date at job start Tue Mar 31 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47064 * 270.00582 * 3 2 1 5 5 H 1.48496 * 109.46535 * 30.00504 * 3 2 1 6 6 H 1.48498 * 109.46832 * 150.00062 * 3 2 1 7 7 C 1.37874 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00270 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99904 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47137 * 179.97438 * 9 7 2 11 11 C 1.36780 * 124.95612 * 265.30390 * 10 9 7 12 12 C 1.35407 * 109.73693 * 180.18600 * 11 10 9 13 13 C 1.48368 * 126.63713 * 179.83060 * 12 11 10 14 14 C 1.35004 * 122.28844 * 359.69137 * 13 12 11 15 15 S 1.76238 * 108.17202 * 180.02562 * 14 13 12 16 16 C 1.76115 * 89.98425 * 359.97438 * 15 14 13 17 17 C 1.47827 * 125.32386 * 179.97438 * 16 15 14 18 18 C 1.39545 * 119.74270 * 359.72605 * 17 16 15 19 19 C 1.38353 * 119.04757 * 179.79236 * 18 17 16 20 20 C 1.38824 * 118.53116 * 0.47252 * 19 18 17 21 21 C 1.38297 * 119.39796 * 359.74797 * 20 19 18 22 22 N 1.31713 * 120.91511 * 0.02562 * 21 20 19 23 23 N 1.30114 * 109.35750 * 359.97438 * 16 15 14 24 24 C 1.47141 * 106.72875 * 359.56686 * 12 11 10 25 25 C 1.39441 * 133.94960 * 180.26310 * 24 12 11 26 26 C 1.36678 * 119.78284 * 180.02562 * 25 24 12 27 27 C 1.38813 * 120.49245 * 0.02562 * 26 25 24 28 28 C 1.37743 * 120.63864 * 359.97438 * 27 26 25 29 29 C 1.37761 * 124.94514 * 85.00251 * 10 9 7 30 30 H 0.97005 * 119.99787 * 359.97438 * 1 2 3 31 31 H 1.09008 * 109.47271 * 59.99981 * 9 7 2 32 32 H 1.08996 * 109.47194 * 299.99613 * 9 7 2 33 33 H 1.07998 * 125.12881 * 0.03338 * 11 10 9 34 34 H 1.07998 * 125.91615 * 0.02562 * 14 13 12 35 35 H 1.07996 * 120.47316 * 0.02562 * 18 17 16 36 36 H 1.08001 * 120.73500 * 180.24071 * 19 18 17 37 37 H 1.07993 * 120.30056 * 179.72489 * 20 19 18 38 38 H 1.07993 * 119.53698 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.11169 * 0.02562 * 25 24 12 40 40 H 1.08005 * 119.75857 * 180.02562 * 26 25 24 41 41 H 1.07990 * 119.68001 * 179.97438 * 27 26 25 42 42 H 1.08007 * 120.10722 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 4.3481 -3.2833 1.1163 12 6 4.7599 -4.5235 0.7618 13 6 5.2246 -5.5968 1.6748 14 6 5.2894 -5.4276 3.0126 15 16 5.8861 -6.9239 3.7275 16 6 5.9918 -7.6468 2.1250 17 6 6.4520 -9.0216 1.8362 18 6 6.8510 -9.8526 2.8839 19 6 7.2750 -11.1380 2.5977 20 6 7.2963 -11.5495 1.2720 21 6 6.8915 -10.6723 0.2824 22 7 6.4877 -9.4547 0.5811 23 7 5.6016 -6.7817 1.2350 24 6 4.6514 -4.6032 -0.7034 25 6 4.9168 -5.6009 -1.6407 26 6 4.7074 -5.3575 -2.9692 27 6 4.2327 -4.1237 -3.3929 28 6 3.9643 -3.1248 -2.4834 29 6 4.1697 -3.3522 -1.1258 30 1 -0.4850 0.8401 0.0004 31 1 3.8753 -0.6804 0.8889 32 1 3.8745 -0.6801 -0.8911 33 1 4.3037 -2.9087 2.1283 34 1 5.0220 -4.5307 3.5515 35 1 6.8256 -9.4985 3.9039 36 1 7.5862 -11.8054 3.3877 37 1 7.6263 -12.5453 1.0157 38 1 6.9075 -10.9899 -0.7497 39 1 5.2866 -6.5629 -1.3180 40 1 4.9127 -6.1307 -3.6948 41 1 4.0723 -3.9455 -4.4459 42 1 3.5957 -2.1679 -2.8226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007845303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:40 Heat of formation + Delta-G solvation = 147.150031 kcal Electronic energy + Delta-G solvation = -27439.225008 eV Core-core repulsion = 23669.617115 eV Total energy + Delta-G solvation = -3769.607893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81833 -40.40448 -39.03833 -36.49874 -33.69419 -32.95440 -32.61211 -31.71659 -29.83340 -29.79054 -28.12514 -26.94552 -25.82459 -23.91399 -23.43341 -22.64908 -21.72974 -21.03839 -19.94614 -18.82353 -18.08931 -17.17746 -16.90838 -16.36011 -16.16397 -16.04291 -15.62490 -14.93518 -14.88543 -14.70231 -14.46220 -13.92801 -13.64309 -13.49974 -13.40506 -13.34227 -13.20788 -12.94580 -12.59760 -12.31682 -12.06829 -12.04850 -11.57955 -11.44929 -11.04509 -10.92569 -10.76714 -10.46484 -10.23079 -10.20480 -9.98313 -9.74305 -9.70764 -9.57313 -9.38619 -9.02196 -8.85053 -8.35798 -7.56975 -6.79685 -6.32529 -4.37072 0.03683 0.92008 1.17298 1.20077 1.67678 1.74107 2.21438 2.66755 3.09457 3.15709 3.18065 3.49680 3.54977 3.72493 3.82558 4.15193 4.19853 4.49676 4.57376 4.66630 4.70207 4.81690 4.96166 5.14735 5.16880 5.30509 5.35243 5.39612 5.46018 5.61149 5.65019 5.77456 5.80610 5.98828 6.03481 6.21039 6.27520 6.32747 6.40326 6.43971 6.47592 6.68180 7.05462 7.21092 7.21936 7.31035 7.45779 7.61363 7.85318 7.87659 7.95876 8.25310 8.73264 9.22683 10.79680 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.002501 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.481808 B =11190.915677 C =12648.750786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.080 3.920 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.207 3.793 10 N -0.442 5.442 11 C 0.108 3.892 12 C -0.155 4.155 13 C 0.175 3.825 14 C -0.254 4.254 15 S 0.083 5.917 16 C 0.101 3.899 17 C 0.201 3.799 18 C -0.154 4.154 19 C -0.071 4.071 20 C -0.168 4.168 21 C 0.106 3.894 22 N -0.444 5.444 23 N -0.411 5.411 24 C -0.083 4.083 25 C -0.066 4.066 26 C -0.157 4.157 27 C -0.113 4.113 28 C -0.113 4.113 29 C 0.104 3.896 30 H 0.269 0.731 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.166 0.834 34 H 0.181 0.819 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.162 0.838 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.906 -19.130 5.697 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.100 0.900 9 C 0.088 3.912 10 N -0.117 5.117 11 C -0.026 4.026 12 C -0.166 4.166 13 C 0.044 3.956 14 C -0.393 4.393 15 S 0.336 5.664 16 C -0.176 4.176 17 C 0.061 3.939 18 C -0.176 4.176 19 C -0.097 4.097 20 C -0.189 4.189 21 C -0.053 4.053 22 N -0.153 5.153 23 N -0.125 5.125 24 C -0.087 4.087 25 C -0.085 4.085 26 C -0.176 4.176 27 C -0.133 4.133 28 C -0.134 4.134 29 C -0.003 4.003 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.183 0.817 34 H 0.198 0.802 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.179 0.821 39 H 0.146 0.854 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.536 -18.499 5.521 24.781 hybrid contribution 0.061 1.160 0.268 1.193 sum 15.598 -17.339 5.789 24.030 Atomic orbital electron populations 1.69879 1.06190 1.27447 1.48507 1.24839 0.94813 0.98865 0.93981 0.86904 0.80301 0.83785 0.79116 1.19629 1.20518 1.18932 1.21216 0.88078 0.95577 1.53622 0.89967 1.20109 0.96842 0.75656 0.98631 1.44365 1.50512 1.13264 1.03604 1.21684 0.98173 0.90885 0.91900 1.17736 1.15650 0.92559 0.90636 1.17968 0.97944 0.90124 0.89576 1.26893 1.12840 1.02509 0.97098 1.84520 1.62744 1.07448 1.11656 1.25239 1.05081 0.96559 0.90696 1.18583 0.96119 0.89713 0.89448 1.21998 1.00873 0.94896 0.99808 1.21485 0.95977 0.95107 0.97130 1.22316 1.01230 1.01604 0.93792 1.22893 0.93665 0.88350 1.00348 1.67759 1.11947 1.15780 1.19836 1.66378 1.10403 1.00891 1.34795 1.18835 1.04385 0.93688 0.91821 1.20334 0.98243 0.98260 0.91653 1.20533 1.04317 0.97226 0.95502 1.20694 1.00867 0.93286 0.98440 1.20117 1.03309 1.00332 0.89593 1.18253 1.02308 0.90903 0.88876 0.92071 0.93612 0.94241 0.81698 0.80165 0.84513 0.84176 0.84350 0.82054 0.85450 0.86888 0.86511 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.85 13.96 55.43 0.77 -25.08 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 19.73 27.47 -169.99 -4.67 15.06 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 7 C -0.55 -14.79 9.94 -34.44 -0.34 -15.13 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 9 C 0.21 4.69 4.80 -5.19 -0.02 4.67 16 10 N -0.44 -9.46 2.76 -115.40 -0.32 -9.78 16 11 C 0.11 2.03 10.82 -16.35 -0.18 1.85 16 12 C -0.16 -2.97 6.27 -103.13 -0.65 -3.62 16 13 C 0.17 2.97 6.66 -84.82 -0.57 2.41 16 14 C -0.25 -3.48 10.82 29.58 0.32 -3.16 16 15 S 0.08 0.94 22.33 -107.50 -2.40 -1.46 16 16 C 0.10 1.45 7.41 -14.36 -0.11 1.34 16 17 C 0.20 2.52 6.75 -83.03 -0.56 1.96 16 18 C -0.15 -1.36 9.64 -39.05 -0.38 -1.74 16 19 C -0.07 -0.47 10.16 -39.32 -0.40 -0.87 16 20 C -0.17 -1.11 10.11 -39.34 -0.40 -1.51 16 21 C 0.11 0.97 11.17 -17.58 -0.20 0.77 16 22 N -0.44 -5.82 10.26 -9.85 -0.10 -5.92 16 23 N -0.41 -7.06 9.56 -7.92 -0.08 -7.13 16 24 C -0.08 -1.69 6.29 -104.97 -0.66 -2.35 16 25 C -0.07 -1.25 9.86 -39.70 -0.39 -1.64 16 26 C -0.16 -2.64 9.98 -39.93 -0.40 -3.04 16 27 C -0.11 -1.94 10.01 -39.55 -0.40 -2.34 16 28 C -0.11 -2.24 9.99 -39.42 -0.39 -2.63 16 29 C 0.10 2.21 6.80 -83.98 -0.57 1.64 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.05 0.98 7.17 -51.92 -0.37 0.61 16 32 H 0.04 0.88 7.57 -51.93 -0.39 0.48 16 33 H 0.17 2.54 7.63 -52.49 -0.40 2.14 16 34 H 0.18 2.03 7.61 -52.49 -0.40 1.63 16 35 H 0.14 0.95 7.27 -52.49 -0.38 0.57 16 36 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.13 2.36 7.38 -52.49 -0.39 1.97 16 40 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -33.26 379.40 -11.92 -45.18 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.46 Total: 4.73 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -6.38 Total: -21.32 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.28 Total: -47.91 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.67 Total: 15.06 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.40 Total: -1.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.26 -11.92 -45.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007845303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.331 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds