Wall clock time and date at job start Tue Mar 31 2020 05:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47064 * 270.00582 * 3 2 1 5 5 H 1.48496 * 109.46535 * 30.00504 * 3 2 1 6 6 H 1.48498 * 109.46832 * 150.00062 * 3 2 1 7 7 C 1.37874 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00270 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99904 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47137 * 179.97438 * 9 7 2 11 11 C 1.36780 * 124.95612 * 265.30390 * 10 9 7 12 12 C 1.35407 * 109.73693 * 180.18600 * 11 10 9 13 13 C 1.48368 * 126.63713 * 179.83060 * 12 11 10 14 14 C 1.35004 * 122.28844 * 359.69137 * 13 12 11 15 15 S 1.76238 * 108.17202 * 180.02562 * 14 13 12 16 16 C 1.76115 * 89.98425 * 359.97438 * 15 14 13 17 17 C 1.47827 * 125.32386 * 179.97438 * 16 15 14 18 18 C 1.39545 * 119.74270 * 359.72605 * 17 16 15 19 19 C 1.38353 * 119.04757 * 179.79236 * 18 17 16 20 20 C 1.38824 * 118.53116 * 0.47252 * 19 18 17 21 21 C 1.38297 * 119.39796 * 359.74797 * 20 19 18 22 22 N 1.31713 * 120.91511 * 0.02562 * 21 20 19 23 23 N 1.30114 * 109.35750 * 359.97438 * 16 15 14 24 24 C 1.47141 * 106.72875 * 359.56686 * 12 11 10 25 25 C 1.39441 * 133.94960 * 180.26310 * 24 12 11 26 26 C 1.36678 * 119.78284 * 180.02562 * 25 24 12 27 27 C 1.38813 * 120.49245 * 0.02562 * 26 25 24 28 28 C 1.37743 * 120.63864 * 359.97438 * 27 26 25 29 29 C 1.37761 * 124.94514 * 85.00251 * 10 9 7 30 30 H 0.97005 * 119.99787 * 359.97438 * 1 2 3 31 31 H 1.09008 * 109.47271 * 59.99981 * 9 7 2 32 32 H 1.08996 * 109.47194 * 299.99613 * 9 7 2 33 33 H 1.07998 * 125.12881 * 0.03338 * 11 10 9 34 34 H 1.07998 * 125.91615 * 0.02562 * 14 13 12 35 35 H 1.07996 * 120.47316 * 0.02562 * 18 17 16 36 36 H 1.08001 * 120.73500 * 180.24071 * 19 18 17 37 37 H 1.07993 * 120.30056 * 179.72489 * 20 19 18 38 38 H 1.07993 * 119.53698 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.11169 * 0.02562 * 25 24 12 40 40 H 1.08005 * 119.75857 * 180.02562 * 26 25 24 41 41 H 1.07990 * 119.68001 * 179.97438 * 27 26 25 42 42 H 1.08007 * 120.10722 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 4.3481 -3.2833 1.1163 12 6 4.7599 -4.5235 0.7618 13 6 5.2246 -5.5968 1.6748 14 6 5.2894 -5.4276 3.0126 15 16 5.8861 -6.9239 3.7275 16 6 5.9918 -7.6468 2.1250 17 6 6.4520 -9.0216 1.8362 18 6 6.8510 -9.8526 2.8839 19 6 7.2750 -11.1380 2.5977 20 6 7.2963 -11.5495 1.2720 21 6 6.8915 -10.6723 0.2824 22 7 6.4877 -9.4547 0.5811 23 7 5.6016 -6.7817 1.2350 24 6 4.6514 -4.6032 -0.7034 25 6 4.9168 -5.6009 -1.6407 26 6 4.7074 -5.3575 -2.9692 27 6 4.2327 -4.1237 -3.3929 28 6 3.9643 -3.1248 -2.4834 29 6 4.1697 -3.3522 -1.1258 30 1 -0.4850 0.8401 0.0004 31 1 3.8753 -0.6804 0.8889 32 1 3.8745 -0.6801 -0.8911 33 1 4.3037 -2.9087 2.1283 34 1 5.0220 -4.5307 3.5515 35 1 6.8256 -9.4985 3.9039 36 1 7.5862 -11.8054 3.3877 37 1 7.6263 -12.5453 1.0157 38 1 6.9075 -10.9899 -0.7497 39 1 5.2866 -6.5629 -1.3180 40 1 4.9127 -6.1307 -3.6948 41 1 4.0723 -3.9455 -4.4459 42 1 3.5957 -2.1679 -2.8226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007845303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:39 Heat of formation + Delta-G solvation = 128.508183 kcal Electronic energy + Delta-G solvation = -27440.033380 eV Core-core repulsion = 23669.617115 eV Total energy + Delta-G solvation = -3770.416264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.094 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.24954 -41.15770 -40.10379 -37.96705 -35.44157 -34.15170 -33.42998 -32.96969 -31.39572 -30.96185 -29.62272 -28.45782 -26.80177 -24.98655 -24.50786 -23.94432 -23.17220 -22.33431 -21.25661 -20.01125 -19.23754 -19.14489 -17.79838 -17.59635 -17.13609 -17.07390 -16.63527 -16.42796 -16.20304 -15.94673 -15.60416 -15.30337 -14.90252 -14.87761 -14.55464 -14.48922 -14.34336 -14.14505 -13.97068 -13.72924 -13.50519 -13.18122 -12.95130 -12.71471 -12.59000 -12.48318 -12.30674 -11.92119 -11.80858 -11.62331 -11.15268 -10.92591 -10.85396 -10.64710 -10.56694 -10.42791 -10.12709 -9.44609 -9.05115 -8.42601 -8.21258 -6.53627 -0.84062 0.11638 0.22527 0.31761 0.47479 0.61764 0.80018 1.32821 1.34026 1.39172 1.44002 2.06473 2.23932 2.41309 2.79671 2.90365 2.92112 3.10573 3.46696 3.81119 3.85721 3.88643 4.00179 4.10302 4.15170 4.20120 4.26206 4.31842 4.40303 4.45234 4.56915 4.58143 4.71184 4.75332 4.80724 4.88824 4.95052 5.04505 5.21476 5.21806 5.22338 5.23995 5.62401 5.71048 5.76494 5.86279 5.97971 6.01225 6.40295 6.45140 6.54756 6.75593 7.04681 7.11450 8.74317 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.002501 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.481808 B =11190.915677 C =12648.750786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.021 3.979 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.236 1.236 7 C -0.552 4.552 8 H 0.024 0.976 9 C 0.218 3.782 10 N -0.460 5.460 11 C 0.091 3.909 12 C -0.156 4.156 13 C 0.141 3.859 14 C -0.257 4.257 15 S 0.166 5.834 16 C 0.085 3.915 17 C 0.160 3.840 18 C -0.150 4.150 19 C -0.067 4.067 20 C -0.150 4.150 21 C 0.087 3.913 22 N -0.491 5.491 23 N -0.455 5.455 24 C -0.108 4.108 25 C -0.076 4.076 26 C -0.151 4.151 27 C -0.103 4.103 28 C -0.140 4.140 29 C 0.075 3.925 30 H 0.273 0.727 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.194 0.806 34 H 0.202 0.798 35 H 0.154 0.846 36 H 0.181 0.819 37 H 0.177 0.823 38 H 0.178 0.822 39 H 0.124 0.876 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.656 -20.808 7.061 28.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.159 1.159 7 C -0.590 4.590 8 H 0.043 0.957 9 C 0.097 3.903 10 N -0.138 5.138 11 C -0.041 4.041 12 C -0.166 4.166 13 C 0.010 3.990 14 C -0.396 4.396 15 S 0.421 5.579 16 C -0.191 4.191 17 C 0.022 3.978 18 C -0.172 4.172 19 C -0.092 4.092 20 C -0.171 4.171 21 C -0.072 4.072 22 N -0.202 5.202 23 N -0.170 5.170 24 C -0.113 4.113 25 C -0.095 4.095 26 C -0.170 4.170 27 C -0.122 4.122 28 C -0.161 4.161 29 C -0.032 4.032 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.211 0.789 34 H 0.219 0.781 35 H 0.172 0.828 36 H 0.198 0.802 37 H 0.195 0.805 38 H 0.195 0.805 39 H 0.142 0.858 40 H 0.165 0.835 41 H 0.170 0.830 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.315 -20.218 6.913 28.142 hybrid contribution -0.758 1.304 -0.125 1.513 sum 17.557 -18.914 6.788 26.685 Atomic orbital electron populations 1.70048 1.08470 1.28834 1.50224 1.25852 0.95640 1.03317 0.93096 0.85685 0.79738 0.77692 0.79737 1.18828 1.20226 1.15947 1.21315 0.90574 0.93517 1.53558 0.95727 1.19871 0.93638 0.77121 0.99630 1.44303 1.51962 1.13056 1.04447 1.22145 0.98493 0.90932 0.92505 1.18093 1.14588 0.93291 0.90671 1.17922 1.00393 0.90242 0.90462 1.27289 1.11174 1.04580 0.96563 1.84089 1.60635 1.04531 1.08652 1.25811 1.04070 0.97197 0.92024 1.18753 0.98850 0.89701 0.90509 1.22236 0.99977 0.95447 0.99585 1.22005 0.94422 0.94511 0.98270 1.22751 0.98611 1.02482 0.93220 1.23337 0.93909 0.87808 1.02105 1.67628 1.13640 1.17989 1.20902 1.66325 1.12417 1.01476 1.36733 1.19217 1.05077 0.93877 0.93090 1.20475 0.98631 0.97869 0.92489 1.20921 1.02802 0.97930 0.95346 1.21085 0.98960 0.92450 0.99704 1.20341 1.04820 1.01143 0.89753 1.18646 1.03346 0.91598 0.89581 0.91814 0.91531 0.93538 0.78883 0.78094 0.82836 0.80175 0.80541 0.80470 0.85790 0.83459 0.83049 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.07 13.96 21.45 0.30 -56.77 16 2 C 0.02 1.15 5.47 84.65 0.46 1.62 16 3 Si 0.95 40.68 27.47 68.60 1.88 42.57 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.24 -8.99 6.54 99.48 0.65 -8.34 16 7 C -0.55 -31.21 9.94 25.60 0.25 -30.96 16 8 H 0.02 1.63 8.06 -2.91 -0.02 1.60 16 9 C 0.22 10.03 4.80 85.63 0.41 10.44 16 10 N -0.46 -20.56 2.76 -519.01 -1.43 -21.99 16 11 C 0.09 3.56 10.82 83.27 0.90 4.46 16 12 C -0.16 -6.28 6.27 -18.89 -0.12 -6.40 16 13 C 0.14 4.97 6.66 41.09 0.27 5.24 16 14 C -0.26 -6.92 10.82 67.08 0.73 -6.20 16 15 S 0.17 3.53 22.33 -56.49 -1.26 2.27 16 16 C 0.09 2.46 7.41 87.49 0.65 3.11 16 17 C 0.16 3.99 6.75 41.85 0.28 4.27 16 18 C -0.15 -2.34 9.64 22.61 0.22 -2.12 16 19 C -0.07 -0.63 10.16 22.44 0.23 -0.40 16 20 C -0.15 -1.48 10.11 22.42 0.23 -1.25 16 21 C 0.09 1.49 11.17 84.72 0.95 2.43 16 22 N -0.49 -13.08 10.26 -185.07 -1.90 -14.97 16 23 N -0.46 -16.29 9.56 -178.96 -1.71 -18.01 16 24 C -0.11 -4.65 6.29 -20.09 -0.13 -4.78 16 25 C -0.08 -2.97 9.86 22.19 0.22 -2.75 16 26 C -0.15 -5.07 9.98 22.04 0.22 -4.85 16 27 C -0.10 -3.51 10.01 22.29 0.22 -3.28 16 28 C -0.14 -5.76 9.99 22.38 0.22 -5.54 16 29 C 0.07 3.35 6.80 39.00 0.27 3.62 16 30 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 31 H 0.07 2.78 7.17 -2.38 -0.02 2.76 16 32 H 0.05 2.07 7.57 -2.39 -0.02 2.05 16 33 H 0.19 6.01 7.63 -2.91 -0.02 5.99 16 34 H 0.20 4.29 7.61 -2.91 -0.02 4.27 16 35 H 0.15 1.69 7.27 -2.91 -0.02 1.67 16 36 H 0.18 0.26 8.06 -2.91 -0.02 0.23 16 37 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 38 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.12 4.87 7.38 -2.91 -0.02 4.85 16 40 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 41 H 0.15 4.01 8.06 -2.92 -0.02 3.98 16 42 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -80.26 379.40 3.37 -76.88 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 1.01 Total: 23.36 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 6.48 Total: -33.34 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -4.74 Total: -111.74 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.88 Total: 42.57 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.26 Total: 2.27 kcal Total: -80.26 3.37 -76.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007845303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.390 kcal (2) G-P(sol) polarization free energy of solvation -80.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds