Wall clock time and date at job start Tue Mar 31 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86790 * 119.99882 * 2 1 4 4 H 1.48499 * 109.47326 * 240.00033 * 3 2 1 5 5 H 1.48499 * 109.47554 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47421 * 120.00089 * 3 2 1 7 7 C 1.37880 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 0.02562 * 7 2 1 10 10 N 1.46510 * 109.46833 * 179.97438 * 9 7 2 11 11 C 1.46494 * 119.99973 * 90.00009 * 10 9 7 12 12 C 1.50703 * 109.47258 * 269.99802 * 11 10 9 13 13 C 1.38674 * 120.41757 * 89.99518 * 12 11 10 14 14 C 1.38629 * 118.42002 * 179.97438 * 13 12 11 15 15 C 1.38226 * 119.16079 * 0.25365 * 14 13 12 16 16 N 1.31857 * 120.76159 * 359.50565 * 15 14 13 17 17 C 1.31879 * 121.72806 * 0.48471 * 16 15 14 18 18 C 1.34774 * 119.99835 * 269.99752 * 10 9 7 19 19 S 1.71196 * 119.99838 * 180.02562 * 18 10 9 20 20 N 1.34783 * 119.99892 * 0.02562 * 18 10 9 21 21 C 1.39949 * 119.99717 * 175.71905 * 20 18 10 22 22 C 1.38862 * 120.07454 * 47.34777 * 21 20 18 23 23 C 1.38122 * 119.94070 * 180.02562 * 22 21 20 24 24 C 1.38300 * 120.09066 * 359.97438 * 23 22 21 25 25 C 1.38266 * 120.15208 * 0.02562 * 24 23 22 26 26 C 1.38227 * 120.05789 * 359.71277 * 25 24 23 27 27 Cl 1.73602 * 120.04676 * 180.30475 * 26 25 24 28 28 H 0.96995 * 120.00303 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47768 * 59.99823 * 9 7 2 30 30 H 1.09001 * 109.47479 * 299.99243 * 9 7 2 31 31 H 1.09004 * 109.47311 * 150.00146 * 11 10 9 32 32 H 1.09001 * 109.47812 * 29.99502 * 11 10 9 33 33 H 1.08004 * 120.78961 * 359.96839 * 13 12 11 34 34 H 1.08004 * 120.42057 * 179.97438 * 14 13 12 35 35 H 1.08000 * 119.61895 * 179.74443 * 15 14 13 36 36 H 1.07998 * 119.62201 * 179.75819 * 17 16 15 37 37 H 0.96996 * 119.99775 * 355.72070 * 20 18 10 38 38 H 1.07996 * 120.02983 * 359.97438 * 22 21 20 39 39 H 1.07994 * 119.95296 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.92354 * 179.97438 * 24 23 22 41 41 H 1.07992 * 119.96919 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6791 -4.1695 1.2692 12 6 3.9223 -3.4371 1.7043 13 6 3.8285 -2.3086 2.5048 14 6 4.9986 -1.6675 2.8810 15 6 6.2110 -2.1676 2.4445 16 7 6.2625 -3.2461 1.6876 17 6 5.1701 -3.8817 1.3108 18 6 2.6410 -4.1249 -1.1667 19 16 3.7530 -5.4266 -1.1667 20 7 2.2034 -3.6123 -2.3339 21 6 2.7250 -4.0832 -3.5442 22 6 2.8317 -5.4490 -3.7714 23 6 3.3474 -5.9107 -4.9667 24 6 3.7569 -5.0147 -5.9374 25 6 3.6523 -3.6541 -5.7151 26 6 3.1322 -3.1852 -4.5234 27 17 2.9936 -1.4768 -4.2477 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5572 -0.8896 30 1 0.6241 -2.5568 0.8903 31 1 2.9075 -5.2273 1.1389 32 1 1.9059 -4.0556 2.0290 33 1 2.8667 -1.9380 2.8274 34 1 4.9632 -0.7857 3.5037 35 1 7.1270 -1.6716 2.7297 36 1 5.2516 -4.7598 0.6873 37 1 1.5270 -2.9171 -2.3350 38 1 2.5126 -6.1495 -3.0140 39 1 3.4309 -6.9728 -5.1435 40 1 4.1601 -5.3787 -6.8708 41 1 3.9734 -2.9571 -6.4749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008665014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:59 Heat of formation + Delta-G solvation = 80.885115 kcal Electronic energy + Delta-G solvation = -27592.133781 eV Core-core repulsion = 23817.219576 eV Total energy + Delta-G solvation = -3774.914205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.071 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13028 -39.64304 -38.20373 -36.21573 -35.41324 -33.23935 -32.21543 -31.23614 -30.62482 -29.43513 -28.34747 -26.21528 -24.34973 -23.09634 -22.80324 -22.48133 -21.61314 -20.57868 -18.34893 -17.55845 -17.04031 -16.61007 -16.40057 -15.79708 -15.50459 -15.40282 -14.98816 -14.91976 -14.11727 -13.97580 -13.78247 -13.56688 -13.35812 -13.17081 -12.68924 -12.56480 -12.34659 -12.16017 -11.91172 -11.73965 -11.47701 -11.29506 -11.24067 -11.23007 -11.00219 -10.81112 -10.63922 -10.35465 -10.15138 -9.37851 -9.24582 -8.95583 -8.86271 -8.68491 -8.59204 -8.02848 -7.33983 -6.72282 -6.47822 -4.57336 1.13209 1.42842 1.45928 1.77826 2.01031 2.31710 2.42238 3.07304 3.08251 3.13187 3.18184 3.74385 3.82252 4.11433 4.35541 4.86136 4.87811 4.92378 5.07905 5.13631 5.28424 5.31431 5.37833 5.47599 5.51873 5.56765 5.68907 5.88174 5.93501 6.04216 6.13265 6.25977 6.31839 6.33840 6.51992 6.57437 6.59176 6.66542 6.76053 6.89853 7.03933 7.20280 7.37775 7.49712 7.60971 7.71385 8.44113 8.50368 9.12586 10.58327 Molecular weight = 361.07amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.005135 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.065836 B = 5451.580565 C = 7236.901820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.075 3.925 3 Si 0.894 3.106 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.223 3.777 10 N -0.531 5.531 11 C 0.159 3.841 12 C -0.152 4.152 13 C -0.033 4.033 14 C -0.188 4.188 15 C 0.093 3.907 16 N -0.497 5.497 17 C 0.124 3.876 18 C 0.576 3.424 19 S -0.685 6.685 20 N -0.630 5.630 21 C 0.150 3.850 22 C -0.057 4.057 23 C -0.115 4.115 24 C -0.111 4.111 25 C -0.114 4.114 26 C -0.045 4.045 27 Cl -0.056 7.056 28 H 0.270 0.730 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.146 0.854 36 H 0.177 0.823 37 H 0.420 0.580 38 H 0.154 0.846 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.408 -6.218 -3.998 7.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.101 3.899 10 N -0.232 5.232 11 C 0.035 3.965 12 C -0.155 4.155 13 C -0.060 4.060 14 C -0.208 4.208 15 C -0.064 4.064 16 N -0.206 5.206 17 C -0.034 4.034 18 C 0.214 3.786 19 S -0.552 6.552 20 N -0.259 5.259 21 C 0.054 3.946 22 C -0.080 4.080 23 C -0.135 4.135 24 C -0.130 4.130 25 C -0.134 4.134 26 C -0.075 4.075 27 Cl -0.027 7.027 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.109 0.891 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.163 0.837 36 H 0.194 0.806 37 H 0.263 0.737 38 H 0.171 0.829 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.655 -7.007 -4.059 8.885 hybrid contribution -1.301 2.984 0.340 3.273 sum 2.353 -4.023 -3.720 5.963 Atomic orbital electron populations 1.69883 1.05958 1.27981 1.48461 1.24854 0.94789 0.99259 0.94105 0.86587 0.79697 0.82361 0.79310 1.19952 1.20915 1.19711 1.21222 0.93636 0.89266 1.53579 0.91637 1.19865 0.87519 0.83060 0.99424 1.47608 1.40673 1.31870 1.03078 1.20641 0.93447 0.99169 0.83197 1.20961 0.96419 0.98104 1.00049 1.21531 0.98924 0.92250 0.93285 1.22024 0.93737 1.01686 1.03364 1.22698 0.97287 0.92703 0.93701 1.67794 1.32753 1.08331 1.11686 1.23531 0.86841 0.98902 0.94131 1.21991 0.85955 0.88706 0.81943 1.92903 1.41731 1.26975 1.93558 1.42215 1.41203 1.40350 1.02093 1.17178 1.00525 0.92316 0.84554 1.21494 0.96692 0.93484 0.96336 1.21035 0.99628 0.99981 0.92858 1.21073 1.00075 0.92269 0.99554 1.20780 1.00831 0.96233 0.95579 1.20998 1.04248 0.85196 0.97036 1.98418 1.96472 1.11468 1.96348 0.92064 0.94721 0.92781 0.86772 0.89068 0.84700 0.85529 0.83694 0.80610 0.73711 0.82866 0.85304 0.85446 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.21 13.29 55.43 0.74 -21.47 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -12.46 8.83 -34.44 -0.30 -12.77 16 8 H 0.07 1.65 7.58 -52.49 -0.40 1.25 16 9 C 0.22 4.57 5.01 -5.19 -0.03 4.54 16 10 N -0.53 -9.74 2.44 -178.46 -0.44 -10.17 16 11 C 0.16 2.59 5.42 -5.20 -0.03 2.56 16 12 C -0.15 -2.63 5.48 -104.48 -0.57 -3.21 16 13 C -0.03 -0.56 9.08 -39.28 -0.36 -0.92 16 14 C -0.19 -2.97 10.11 -39.44 -0.40 -3.36 16 15 C 0.09 1.50 11.18 -17.55 -0.20 1.31 16 16 N -0.50 -9.21 10.36 -13.25 -0.14 -9.34 16 17 C 0.12 2.28 10.46 -17.55 -0.18 2.10 16 18 C 0.58 10.79 7.56 -86.91 -0.66 10.14 16 19 S -0.68 -13.18 21.91 -107.50 -2.36 -15.54 16 20 N -0.63 -11.29 4.71 -11.37 -0.05 -11.34 16 21 C 0.15 2.48 5.87 -83.65 -0.49 1.99 16 22 C -0.06 -0.86 7.88 -39.39 -0.31 -1.17 16 23 C -0.11 -1.41 10.04 -39.60 -0.40 -1.81 16 24 C -0.11 -1.26 10.04 -39.55 -0.40 -1.66 16 25 C -0.11 -1.48 9.82 -39.58 -0.39 -1.87 16 26 C -0.05 -0.71 6.34 -39.32 -0.25 -0.96 16 27 Cl -0.06 -0.95 28.22 -51.86 -1.46 -2.42 16 28 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.04 0.75 6.30 -51.93 -0.33 0.42 16 30 H 0.05 1.14 7.89 -51.93 -0.41 0.73 16 31 H 0.11 1.82 6.53 -51.93 -0.34 1.48 16 32 H 0.09 1.30 7.85 -51.93 -0.41 0.89 16 33 H 0.14 2.21 8.06 -52.48 -0.42 1.79 16 34 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 36 H 0.18 3.39 5.84 -52.49 -0.31 3.08 16 37 H 0.42 7.78 6.21 -40.82 -0.25 7.53 16 38 H 0.15 2.42 6.31 -49.77 -0.31 2.10 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -27.24 371.54 -12.61 -39.85 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -4.43 Total: 13.42 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -5.05 Total: -3.37 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.11 Total: -52.33 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: -13.18 SS G_CDS: -2.36 Total: -15.54 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.46 Total: -2.42 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.24 -12.61 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008665014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.737 kcal (2) G-P(sol) polarization free energy of solvation -27.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds