Wall clock time and date at job start Tue Mar 31 2020 05:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35588 * 124.73147 * 2 1 4 4 C 1.37844 * 109.48018 * 180.02562 * 3 2 1 5 5 C 1.46138 * 126.87059 * 180.02562 * 4 3 2 6 6 C 1.36285 * 119.99719 * 35.52324 * 5 4 3 7 7 O 1.35407 * 125.74038 * 187.25061 * 6 5 4 8 8 C 1.35044 * 111.42886 * 179.81101 * 7 6 5 9 9 C 1.38777 * 132.13485 * 180.02562 * 8 7 6 10 10 C 1.38695 * 119.90194 * 180.36984 * 9 8 7 11 11 O 1.35598 * 119.73867 * 180.02562 * 10 9 8 12 12 C 1.34790 * 117.00394 * 5.58111 * 11 10 9 13 13 H 1.08009 * 119.99789 * 354.92942 * 12 11 10 14 14 C 1.38713 * 120.00501 * 174.92969 * 12 11 10 15 15 N 1.31517 * 119.99872 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00369 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47034 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47372 * 119.99695 * 16 14 12 19 19 H 1.48500 * 109.47092 * 240.00091 * 16 14 12 20 20 C 1.39386 * 120.52053 * 0.03786 * 10 9 8 21 21 C 1.36572 * 120.21780 * 359.97438 * 20 10 9 22 22 C 1.39535 * 119.87712 * 359.97438 * 21 20 10 23 23 C 1.41995 * 125.74650 * 7.56075 * 6 5 4 24 24 O 1.22008 * 127.40242 * 0.02562 * 23 6 5 25 25 C 1.47581 * 106.26094 * 359.80111 * 4 3 2 26 26 C 1.39239 * 133.86776 * 179.53467 * 25 4 3 27 27 C 1.37788 * 119.68732 * 180.37168 * 26 25 4 28 28 C 1.38741 * 120.27229 * 0.26628 * 27 26 25 29 29 C 1.37776 * 120.63158 * 359.97438 * 28 27 26 30 30 C 1.38013 * 124.72287 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46903 * 270.00298 * 1 2 3 32 32 H 1.09001 * 109.46454 * 30.00047 * 1 2 3 33 33 H 1.08999 * 109.46903 * 150.00167 * 1 2 3 34 34 H 1.08000 * 125.26400 * 359.97438 * 3 2 1 35 35 H 1.07999 * 120.00349 * 215.52064 * 5 4 3 36 36 H 1.08007 * 120.05303 * 0.36641 * 9 8 7 37 37 H 0.96994 * 120.00144 * 180.02562 * 15 14 12 38 38 H 1.07998 * 119.88862 * 179.97438 * 20 10 9 39 39 H 1.08001 * 120.06333 * 180.02562 * 21 20 10 40 40 H 1.07998 * 120.15887 * 0.63842 * 26 25 4 41 41 H 1.07995 * 119.86243 * 180.25233 * 27 26 25 42 42 H 1.07993 * 119.67993 * 179.97438 * 28 27 26 43 43 H 1.07998 * 120.01552 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2375 1.1143 0.0000 4 6 3.5674 0.7517 -0.0006 5 6 4.7209 1.6490 -0.0003 6 6 4.6691 2.8251 0.6864 7 8 5.6071 3.8011 0.6552 8 6 5.2614 4.8430 1.4417 9 6 5.8921 6.0468 1.7229 10 6 5.3005 6.9505 2.5929 11 8 5.9194 8.1260 2.8649 12 6 7.0420 8.4014 2.1715 13 1 7.4550 7.6650 1.4979 14 6 7.6668 9.6306 2.3228 15 7 7.1636 10.5275 3.1426 16 14 9.2220 10.0126 1.3612 17 1 9.5794 8.8462 0.5143 18 1 8.9918 11.1992 0.4985 19 1 10.3316 10.2956 2.3067 20 6 4.0750 6.6600 3.1900 21 6 3.4430 5.4791 2.9228 22 6 4.0261 4.5610 2.0486 23 6 3.6254 3.2305 1.5596 24 8 2.6135 2.6106 1.8431 25 6 3.5934 -0.7239 0.0040 26 6 4.6141 -1.6710 -0.0026 27 6 4.3001 -3.0126 -0.0030 28 6 2.9740 -3.4206 -0.0026 29 6 1.9544 -2.4939 -0.0012 30 6 2.2512 -1.1344 0.0005 31 1 -0.3633 0.0001 1.0277 32 1 -0.3632 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 1.8681 2.1291 -0.0004 35 1 5.6144 1.3801 -0.5440 36 1 6.8422 6.2795 1.2650 37 1 7.6002 11.3872 3.2481 38 1 3.6238 7.3710 3.8662 39 1 2.4933 5.2567 3.3865 40 1 5.6470 -1.3556 -0.0029 41 1 5.0895 -3.7496 -0.0040 42 1 2.7388 -4.4746 -0.0034 43 1 0.9257 -2.8225 -0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008993551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:57 Heat of formation + Delta-G solvation = 42.137911 kcal Electronic energy + Delta-G solvation = -30027.393683 eV Core-core repulsion = 25778.186501 eV Total energy + Delta-G solvation = -4249.207183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.115 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.88392 -41.33749 -38.92418 -37.83855 -37.15443 -36.03387 -34.09025 -32.60437 -31.39146 -30.45247 -29.90645 -29.65205 -28.67164 -26.69751 -25.85949 -24.31455 -22.89771 -22.51368 -21.52275 -21.25771 -20.52638 -19.21193 -18.22463 -17.64984 -17.11365 -16.88090 -16.41372 -15.80982 -15.65421 -15.62087 -15.50521 -14.91568 -14.46059 -14.26904 -14.10731 -14.04142 -13.87257 -13.74427 -13.30100 -13.28068 -13.11297 -13.09229 -12.88591 -12.61418 -12.35150 -12.11986 -11.90548 -11.80510 -11.48031 -11.39878 -11.08842 -10.95540 -10.91151 -10.58892 -10.08460 -9.78946 -9.26749 -9.13583 -9.05595 -8.29644 -8.09729 -7.57256 -7.21130 -6.77915 -4.32530 0.37333 1.05734 1.47354 1.86286 2.12407 2.59285 2.71170 2.98778 3.00530 3.06903 3.14055 3.39987 3.74324 3.79797 4.32389 4.38708 4.46615 4.49690 4.71188 4.80143 4.83425 4.89433 4.93441 4.96740 5.13277 5.18197 5.20912 5.28587 5.39208 5.51996 5.53211 5.63078 5.75617 5.83981 5.86261 6.03752 6.13206 6.18741 6.32441 6.43580 6.47919 6.59224 6.63282 6.70667 6.86896 6.96635 7.02854 7.09497 7.11972 7.22730 7.63485 7.68574 7.87762 8.66139 9.28532 10.37533 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.002007 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.423499 B =13947.815245 C =14915.674906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.475 5.475 3 C 0.145 3.855 4 C -0.185 4.185 5 C 0.016 3.984 6 C -0.052 4.052 7 O -0.224 6.224 8 C 0.182 3.818 9 C -0.257 4.257 10 C 0.202 3.798 11 O -0.145 6.145 12 C -0.393 4.393 13 H 0.103 0.897 14 C 0.044 3.956 15 N -0.843 5.843 16 Si 0.948 3.052 17 H -0.262 1.262 18 H -0.272 1.272 19 H -0.272 1.272 20 C -0.216 4.216 21 C 0.026 3.974 22 C -0.366 4.366 23 C 0.412 3.588 24 O -0.465 6.465 25 C -0.072 4.072 26 C -0.078 4.078 27 C -0.142 4.142 28 C -0.110 4.110 29 C -0.123 4.123 30 C 0.083 3.917 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.179 0.821 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.277 0.723 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 -20.835 -7.596 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.156 5.156 3 C 0.015 3.985 4 C -0.192 4.192 5 C -0.004 4.004 6 C -0.097 4.097 7 O -0.132 6.132 8 C 0.137 3.863 9 C -0.277 4.277 10 C 0.143 3.857 11 O -0.045 6.045 12 C -0.468 4.468 13 H 0.120 0.880 14 C -0.164 4.164 15 N -0.475 5.475 16 Si 0.771 3.229 17 H -0.186 1.186 18 H -0.197 1.197 19 H -0.197 1.197 20 C -0.235 4.235 21 C 0.007 3.993 22 C -0.369 4.369 23 C 0.300 3.700 24 O -0.349 6.349 25 C -0.076 4.076 26 C -0.096 4.096 27 C -0.161 4.161 28 C -0.129 4.129 29 C -0.143 4.143 30 C -0.021 4.021 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.196 0.804 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.087 0.913 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.717 -20.663 -7.329 23.981 hybrid contribution 0.833 0.379 -0.315 0.968 sum -8.884 -20.284 -7.644 23.426 Atomic orbital electron populations 1.22018 0.76811 1.04216 1.03511 1.43640 1.06331 1.04432 1.61183 1.22708 0.89696 0.91028 0.95076 1.18618 0.91101 0.90487 1.18982 1.20463 0.96791 0.88610 0.94547 1.20592 0.92863 0.92776 1.03460 1.84298 1.43424 1.24603 1.60880 1.19201 0.92121 0.87202 0.87784 1.19848 1.04942 0.92909 1.09971 1.19062 0.90427 0.85927 0.90238 1.83951 1.36583 1.29743 1.54180 1.21659 1.00199 1.01451 1.23491 0.87975 1.25472 0.99733 0.94251 0.96937 1.70021 1.38760 1.06269 1.32411 0.85533 0.79114 0.79289 0.78961 1.18602 1.19735 1.19746 1.19914 0.95851 0.99519 1.08228 1.19806 0.97229 0.90384 0.91859 1.20505 1.01798 1.00813 1.13787 1.19173 0.85072 0.85559 0.80200 1.90627 1.26196 1.59376 1.58686 1.18935 0.92251 0.91998 1.04402 1.20482 0.98139 0.91849 0.99155 1.20891 0.96323 0.95336 1.03516 1.20737 0.92340 0.98657 1.01140 1.20003 0.99483 0.89068 1.05756 1.18231 0.89950 0.88138 1.05744 0.90798 0.89589 0.90037 0.80435 0.84351 0.84081 0.91328 0.85246 0.85912 0.85873 0.85987 0.85905 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.98 59.85 0.66 1.20 16 2 N -0.48 -5.44 3.15 -121.11 -0.38 -5.83 16 3 C 0.15 1.94 8.57 -16.04 -0.14 1.80 16 4 C -0.19 -2.62 5.73 -103.06 -0.59 -3.21 16 5 C 0.02 0.23 10.24 -37.12 -0.38 -0.15 16 6 C -0.05 -0.89 6.87 -38.85 -0.27 -1.15 16 7 O -0.22 -4.20 10.59 0.48 0.01 -4.20 16 8 C 0.18 3.70 7.32 -38.53 -0.28 3.42 16 9 C -0.26 -5.53 9.18 -39.21 -0.36 -5.89 16 10 C 0.20 4.61 6.65 -38.99 -0.26 4.35 16 11 O -0.15 -3.82 9.74 0.63 0.01 -3.81 16 12 C -0.39 -10.14 9.48 30.91 0.29 -9.84 16 13 H 0.10 2.44 5.17 -52.48 -0.27 2.17 16 14 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 15 N -0.84 -22.80 13.67 55.48 0.76 -22.04 16 16 Si 0.95 18.98 29.55 -169.99 -5.02 13.96 16 17 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 C -0.22 -4.33 9.93 -39.76 -0.39 -4.72 16 21 C 0.03 0.48 10.04 -39.70 -0.40 0.08 16 22 C -0.37 -7.18 6.37 -104.88 -0.67 -7.85 16 23 C 0.41 7.57 7.09 -34.46 -0.24 7.32 16 24 O -0.47 -8.55 13.54 4.91 0.07 -8.48 16 25 C -0.07 -0.95 6.35 -104.92 -0.67 -1.62 16 26 C -0.08 -0.88 10.09 -39.37 -0.40 -1.28 16 27 C -0.14 -1.35 10.03 -39.56 -0.40 -1.75 16 28 C -0.11 -0.99 10.01 -39.56 -0.40 -1.38 16 29 C -0.12 -1.21 9.89 -39.41 -0.39 -1.60 16 30 C 0.08 1.01 6.78 -83.94 -0.57 0.44 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.49 8.13 -51.93 -0.42 0.07 16 33 H 0.08 0.42 7.98 -51.93 -0.41 0.01 16 34 H 0.18 2.33 6.50 -52.49 -0.34 1.99 16 35 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.14 2.99 5.60 -52.48 -0.29 2.70 16 37 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.13 2.40 8.06 -52.49 -0.42 1.97 16 39 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.12 0.87 7.98 -52.49 -0.42 0.45 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -30.79 374.81 -9.12 -39.91 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.26 Total: 5.66 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -5.94 Total: -20.82 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: 0.38 Total: -27.87 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.08 Total: -16.49 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.79 -9.12 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008993551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.047 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds