Wall clock time and date at job start Tue Mar 31 2020 05:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35588 * 124.73147 * 2 1 4 4 C 1.37844 * 109.48018 * 180.02562 * 3 2 1 5 5 C 1.46138 * 126.87059 * 180.02562 * 4 3 2 6 6 C 1.36285 * 119.99719 * 35.52324 * 5 4 3 7 7 O 1.35407 * 125.74038 * 187.25061 * 6 5 4 8 8 C 1.35044 * 111.42886 * 179.81101 * 7 6 5 9 9 C 1.38777 * 132.13485 * 180.02562 * 8 7 6 10 10 C 1.38695 * 119.90194 * 180.36984 * 9 8 7 11 11 O 1.35598 * 119.73867 * 180.02562 * 10 9 8 12 12 C 1.34790 * 117.00394 * 5.58111 * 11 10 9 13 13 H 1.08009 * 119.99789 * 354.92942 * 12 11 10 14 14 C 1.38713 * 120.00501 * 174.92969 * 12 11 10 15 15 N 1.31517 * 119.99872 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00369 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47034 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47372 * 119.99695 * 16 14 12 19 19 H 1.48500 * 109.47092 * 240.00091 * 16 14 12 20 20 C 1.39386 * 120.52053 * 0.03786 * 10 9 8 21 21 C 1.36572 * 120.21780 * 359.97438 * 20 10 9 22 22 C 1.39535 * 119.87712 * 359.97438 * 21 20 10 23 23 C 1.41995 * 125.74650 * 7.56075 * 6 5 4 24 24 O 1.22008 * 127.40242 * 0.02562 * 23 6 5 25 25 C 1.47581 * 106.26094 * 359.80111 * 4 3 2 26 26 C 1.39239 * 133.86776 * 179.53467 * 25 4 3 27 27 C 1.37788 * 119.68732 * 180.37168 * 26 25 4 28 28 C 1.38741 * 120.27229 * 0.26628 * 27 26 25 29 29 C 1.37776 * 120.63158 * 359.97438 * 28 27 26 30 30 C 1.38013 * 124.72287 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46903 * 270.00298 * 1 2 3 32 32 H 1.09001 * 109.46454 * 30.00047 * 1 2 3 33 33 H 1.08999 * 109.46903 * 150.00167 * 1 2 3 34 34 H 1.08000 * 125.26400 * 359.97438 * 3 2 1 35 35 H 1.07999 * 120.00349 * 215.52064 * 5 4 3 36 36 H 1.08007 * 120.05303 * 0.36641 * 9 8 7 37 37 H 0.96994 * 120.00144 * 180.02562 * 15 14 12 38 38 H 1.07998 * 119.88862 * 179.97438 * 20 10 9 39 39 H 1.08001 * 120.06333 * 180.02562 * 21 20 10 40 40 H 1.07998 * 120.15887 * 0.63842 * 26 25 4 41 41 H 1.07995 * 119.86243 * 180.25233 * 27 26 25 42 42 H 1.07993 * 119.67993 * 179.97438 * 28 27 26 43 43 H 1.07998 * 120.01552 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2375 1.1143 0.0000 4 6 3.5674 0.7517 -0.0006 5 6 4.7209 1.6490 -0.0003 6 6 4.6691 2.8251 0.6864 7 8 5.6071 3.8011 0.6552 8 6 5.2614 4.8430 1.4417 9 6 5.8921 6.0468 1.7229 10 6 5.3005 6.9505 2.5929 11 8 5.9194 8.1260 2.8649 12 6 7.0420 8.4014 2.1715 13 1 7.4550 7.6650 1.4979 14 6 7.6668 9.6306 2.3228 15 7 7.1636 10.5275 3.1426 16 14 9.2220 10.0126 1.3612 17 1 9.5794 8.8462 0.5143 18 1 8.9918 11.1992 0.4985 19 1 10.3316 10.2956 2.3067 20 6 4.0750 6.6600 3.1900 21 6 3.4430 5.4791 2.9228 22 6 4.0261 4.5610 2.0486 23 6 3.6254 3.2305 1.5596 24 8 2.6135 2.6106 1.8431 25 6 3.5934 -0.7239 0.0040 26 6 4.6141 -1.6710 -0.0026 27 6 4.3001 -3.0126 -0.0030 28 6 2.9740 -3.4206 -0.0026 29 6 1.9544 -2.4939 -0.0012 30 6 2.2512 -1.1344 0.0005 31 1 -0.3633 0.0001 1.0277 32 1 -0.3632 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 1.8681 2.1291 -0.0004 35 1 5.6144 1.3801 -0.5440 36 1 6.8422 6.2795 1.2650 37 1 7.6002 11.3872 3.2481 38 1 3.6238 7.3710 3.8662 39 1 2.4933 5.2567 3.3865 40 1 5.6470 -1.3556 -0.0029 41 1 5.0895 -3.7496 -0.0040 42 1 2.7388 -4.4746 -0.0034 43 1 0.9257 -2.8225 -0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008993551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:56 Heat of formation + Delta-G solvation = 27.160951 kcal Electronic energy + Delta-G solvation = -30028.043133 eV Core-core repulsion = 25778.186501 eV Total energy + Delta-G solvation = -4249.856632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.115 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.29436 -42.27349 -40.63139 -39.23781 -37.98182 -37.65020 -35.15871 -34.41110 -32.51766 -31.38983 -31.23355 -31.19121 -29.58225 -28.05370 -27.29022 -25.61609 -24.06865 -23.72230 -22.71971 -22.38617 -21.88231 -20.48646 -19.77122 -19.23474 -18.42245 -17.94577 -17.60610 -17.24890 -17.05663 -16.49406 -16.42345 -16.26691 -15.99716 -15.67748 -15.60850 -15.24475 -15.02212 -14.86569 -14.73891 -14.54476 -14.51242 -14.11205 -13.85657 -13.70398 -13.61215 -13.34920 -13.27141 -13.02451 -12.61842 -12.58313 -12.48236 -12.24675 -12.11018 -11.83995 -11.54587 -11.12712 -10.89490 -10.70878 -10.22849 -9.52226 -9.24590 -9.14657 -8.60147 -8.27884 -6.27276 -0.94392 0.12630 0.34117 0.54660 0.72497 1.36650 1.42026 1.53117 1.55548 1.69392 1.83255 2.08022 2.12508 2.66997 2.96585 3.00475 3.02892 3.24161 3.67765 3.70385 3.74277 3.78426 3.87602 4.06763 4.19702 4.23267 4.27381 4.31516 4.39947 4.43982 4.52970 4.61464 4.65396 4.67571 4.75320 4.85093 4.85344 4.94746 5.02183 5.16675 5.22442 5.36028 5.42528 5.53415 5.64054 5.66354 5.71282 5.78668 5.87283 6.11663 6.15937 6.27665 6.43942 6.83195 7.50942 8.60512 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.002007 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.423499 B =13947.815245 C =14915.674906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.472 5.472 3 C 0.150 3.850 4 C -0.223 4.223 5 C 0.073 3.927 6 C -0.103 4.103 7 O -0.226 6.226 8 C 0.179 3.821 9 C -0.267 4.267 10 C 0.187 3.813 11 O -0.193 6.193 12 C -0.421 4.421 13 H 0.109 0.891 14 C -0.010 4.010 15 N -0.902 5.902 16 Si 1.019 2.981 17 H -0.252 1.252 18 H -0.265 1.265 19 H -0.266 1.266 20 C -0.220 4.220 21 C 0.035 3.965 22 C -0.364 4.364 23 C 0.417 3.583 24 O -0.470 6.470 25 C -0.095 4.095 26 C -0.098 4.098 27 C -0.137 4.137 28 C -0.108 4.108 29 C -0.124 4.124 30 C 0.063 3.937 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.176 0.824 35 H 0.165 0.835 36 H 0.137 0.863 37 H 0.279 0.721 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.132 0.868 41 H 0.148 0.852 42 H 0.155 0.845 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 -25.427 -9.138 28.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.152 5.152 3 C 0.016 3.984 4 C -0.230 4.230 5 C 0.053 3.947 6 C -0.147 4.147 7 O -0.134 6.134 8 C 0.133 3.867 9 C -0.287 4.287 10 C 0.132 3.868 11 O -0.095 6.095 12 C -0.496 4.496 13 H 0.126 0.874 14 C -0.211 4.211 15 N -0.537 5.537 16 Si 0.838 3.162 17 H -0.175 1.175 18 H -0.190 1.190 19 H -0.190 1.190 20 C -0.239 4.239 21 C 0.017 3.983 22 C -0.367 4.367 23 C 0.305 3.695 24 O -0.354 6.354 25 C -0.099 4.099 26 C -0.117 4.117 27 C -0.156 4.156 28 C -0.127 4.127 29 C -0.144 4.144 30 C -0.040 4.040 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.193 0.807 35 H 0.183 0.817 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.160 0.840 39 H 0.174 0.826 40 H 0.150 0.850 41 H 0.165 0.835 42 H 0.172 0.828 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.078 -25.345 -8.885 29.052 hybrid contribution 0.860 1.059 0.004 1.364 sum -10.217 -24.286 -8.881 27.804 Atomic orbital electron populations 1.22351 0.74393 1.06199 1.04443 1.43933 1.07832 1.03756 1.59637 1.22777 0.89981 0.91622 0.93982 1.18820 0.91345 0.91394 1.21437 1.20941 0.97234 0.86397 0.90080 1.20569 0.93107 0.94167 1.06882 1.84258 1.44014 1.24553 1.60609 1.19181 0.92261 0.87237 0.88043 1.19838 1.05069 0.93544 1.10219 1.19521 0.91277 0.85430 0.90620 1.83948 1.37817 1.31490 1.56265 1.22030 1.00826 1.02278 1.24466 0.87358 1.26643 1.02968 0.93706 0.97773 1.70134 1.41148 1.07106 1.35271 0.84517 0.74773 0.79324 0.77594 1.17491 1.19026 1.19049 1.20163 0.95093 1.00430 1.08208 1.20153 0.98015 0.89226 0.90938 1.21002 1.01302 1.01634 1.12724 1.19098 0.85329 0.84816 0.80250 1.90620 1.26339 1.59221 1.59211 1.19155 0.93600 0.91563 1.05545 1.20737 0.98354 0.92530 1.00039 1.21288 0.97566 0.95110 1.01649 1.21201 0.91880 1.00213 0.99391 1.20393 1.01244 0.88097 1.04688 1.18596 0.89765 0.89176 1.06461 0.90309 0.88222 0.87635 0.80656 0.81743 0.84532 0.91131 0.84020 0.82602 0.85046 0.83468 0.82751 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 10.98 127.77 1.40 2.15 16 2 N -0.47 -9.63 3.15 -537.08 -1.69 -11.32 16 3 C 0.15 3.73 8.57 84.02 0.72 4.45 16 4 C -0.22 -5.92 5.73 -18.85 -0.11 -6.03 16 5 C 0.07 1.97 10.24 23.87 0.24 2.21 16 6 C -0.10 -3.43 6.87 22.75 0.16 -3.27 16 7 O -0.23 -8.47 10.59 -21.20 -0.22 -8.69 16 8 C 0.18 7.38 7.32 22.95 0.17 7.55 16 9 C -0.27 -12.01 9.18 22.51 0.21 -11.80 16 10 C 0.19 8.94 6.65 22.66 0.15 9.09 16 11 O -0.19 -10.82 9.74 -20.67 -0.20 -11.02 16 12 C -0.42 -23.08 9.48 67.93 0.64 -22.43 16 13 H 0.11 5.50 5.17 -2.91 -0.02 5.49 16 14 C -0.01 -0.54 5.49 84.85 0.47 -0.07 16 15 N -0.90 -51.75 13.67 21.62 0.30 -51.46 16 16 Si 1.02 40.36 29.55 68.60 2.03 42.39 16 17 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 18 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 19 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 20 C -0.22 -9.00 9.93 22.16 0.22 -8.78 16 21 C 0.03 1.27 10.04 22.19 0.22 1.50 16 22 C -0.36 -14.14 6.37 -20.03 -0.13 -14.27 16 23 C 0.42 14.93 7.09 25.59 0.18 15.11 16 24 O -0.47 -16.62 13.54 -5.34 -0.07 -16.69 16 25 C -0.09 -2.31 6.35 -20.05 -0.13 -2.43 16 26 C -0.10 -1.96 10.09 22.40 0.23 -1.74 16 27 C -0.14 -2.11 10.03 22.28 0.22 -1.89 16 28 C -0.11 -1.47 10.01 22.28 0.22 -1.25 16 29 C -0.12 -1.96 9.89 22.38 0.22 -1.74 16 30 C 0.06 1.36 6.78 38.91 0.26 1.63 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 0.85 8.13 -2.39 -0.02 0.83 16 33 H 0.11 0.68 7.98 -2.39 -0.02 0.66 16 34 H 0.18 4.39 6.50 -2.91 -0.02 4.37 16 35 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.14 6.15 5.60 -2.91 -0.02 6.13 16 37 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.14 5.36 8.06 -2.91 -0.02 5.34 16 39 H 0.16 4.62 8.06 -2.91 -0.02 4.59 16 40 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 41 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.14 1.44 7.98 -2.91 -0.02 1.42 16 Total: -1.00 -71.31 374.81 6.79 -64.52 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 1.08 Total: 24.28 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 5.58 Total: -32.01 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -1.39 Total: -62.78 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.50 Total: -36.40 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -71.31 6.79 -64.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008993551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.681 kcal (2) G-P(sol) polarization free energy of solvation -71.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds