Wall clock time and date at job start Tue Mar 31 2020 05:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31256 * 1 3 3 Si 1.86798 * 120.00215 * 2 1 4 4 H 1.48504 * 109.46893 * 275.16886 * 3 2 1 5 5 H 1.48499 * 109.47212 * 35.16568 * 3 2 1 6 6 H 1.48498 * 109.47278 * 155.17182 * 3 2 1 7 7 C 1.39078 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 343.08069 * 7 2 1 9 9 N 1.37108 * 119.99498 * 163.07731 * 7 2 1 10 10 C 1.36236 * 119.71321 * 137.53116 * 9 7 2 11 11 C 1.50696 * 118.34839 * 0.02562 * 10 9 7 12 12 N 1.46902 * 109.46878 * 174.54508 * 11 10 9 13 13 C 1.46426 * 111.00131 * 290.32409 * 12 11 10 14 14 C 1.53379 * 108.65665 * 287.85813 * 13 12 11 15 15 C 1.53035 * 107.94150 * 291.78662 * 14 13 12 16 16 C 1.50797 * 109.66578 * 47.29570 * 15 14 13 17 17 C 1.38613 * 118.12676 * 164.70001 * 16 15 14 18 18 C 1.38056 * 120.48877 * 179.36338 * 17 16 15 19 19 C 1.38319 * 119.88686 * 359.97438 * 18 17 16 20 20 C 1.37808 * 119.95196 * 0.13377 * 19 18 17 21 21 C 1.38372 * 122.00857 * 344.28973 * 16 15 14 22 22 N 1.29836 * 123.30105 * 180.02562 * 10 9 7 23 23 C 1.35635 * 121.62175 * 359.97438 * 22 10 9 24 24 C 1.39634 * 121.61702 * 180.02562 * 23 22 10 25 25 C 1.37718 * 119.68852 * 179.97438 * 24 23 22 26 26 C 1.38875 * 120.82880 * 0.02562 * 25 24 23 27 27 C 1.37792 * 120.56662 * 359.97438 * 26 25 24 28 28 C 1.39366 * 119.52302 * 0.02562 * 27 26 25 29 29 C 1.35340 * 119.71906 * 317.52541 * 9 7 2 30 30 O 1.21720 * 121.28784 * 359.97438 * 29 9 7 31 31 H 0.96999 * 119.99950 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47088 * 294.54184 * 11 10 9 33 33 H 1.08996 * 109.47316 * 54.54549 * 11 10 9 34 34 H 1.09003 * 109.60227 * 47.60257 * 13 12 11 35 35 H 1.08998 * 109.61124 * 168.10398 * 13 12 11 36 36 H 1.09002 * 109.77281 * 172.16954 * 14 13 12 37 37 H 1.08996 * 109.80302 * 51.42275 * 14 13 12 38 38 H 1.09005 * 109.43913 * 287.23119 * 15 14 13 39 39 H 1.09000 * 109.40855 * 167.33421 * 15 14 13 40 40 H 1.08001 * 119.75752 * 359.30710 * 17 16 15 41 41 H 1.07994 * 120.06099 * 180.02562 * 18 17 16 42 42 H 1.07996 * 120.02549 * 180.15880 * 19 18 17 43 43 H 1.07992 * 119.79127 * 179.97438 * 20 19 18 44 44 H 1.07994 * 120.16134 * 0.02562 * 24 23 22 45 45 H 1.08001 * 119.58198 * 180.28241 * 25 24 23 46 46 H 1.07998 * 119.71568 * 180.02562 * 26 25 24 47 47 H 1.08007 * 120.23669 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.3849 2.1094 -1.3944 5 1 1.5030 2.6187 0.8064 6 1 3.5945 1.4110 0.5879 7 6 2.0079 -1.2045 0.0005 8 1 1.5029 -2.1194 0.2731 9 7 3.3344 -1.2303 -0.3451 10 6 4.2055 -1.9897 0.3763 11 6 3.6695 -2.7822 1.5406 12 7 4.7389 -3.6239 2.0938 13 6 5.0897 -4.7027 1.1680 14 6 3.9529 -5.7323 1.1611 15 6 3.9327 -6.4213 2.5275 16 6 4.0125 -5.3847 3.6198 17 6 3.6863 -5.7694 4.9109 18 6 3.7551 -4.8634 5.9502 19 6 4.1527 -3.5615 5.7046 20 6 4.4764 -3.1712 4.4232 21 6 4.4056 -4.0822 3.3675 22 7 5.4743 -2.0650 0.1112 23 6 6.0270 -1.3804 -0.9210 24 6 7.3914 -1.4618 -1.2064 25 6 7.9106 -0.7499 -2.2648 26 6 7.0939 0.0500 -3.0534 27 6 5.7445 0.1467 -2.7919 28 6 5.1989 -0.5655 -1.7255 29 6 3.7672 -0.5013 -1.4000 30 8 3.0003 0.1812 -2.0540 31 1 -0.4850 0.8400 -0.0004 32 1 3.3099 -2.0992 2.3102 33 1 2.8480 -3.4139 1.2028 34 1 5.2206 -4.2959 0.1652 35 1 6.0134 -5.1798 1.4953 36 1 4.1287 -6.4705 0.3786 37 1 3.0011 -5.2305 0.9872 38 1 4.7844 -7.0971 2.6056 39 1 3.0083 -6.9891 2.6332 40 1 3.3751 -6.7852 5.1050 41 1 3.4998 -5.1707 6.9536 42 1 4.2098 -2.8516 6.5164 43 1 4.7861 -2.1540 4.2342 44 1 8.0365 -2.0808 -0.6006 45 1 8.9654 -0.8178 -2.4868 46 1 7.5200 0.6002 -3.8793 47 1 5.1143 0.7701 -3.4089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009113615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:14 Heat of formation + Delta-G solvation = 66.546531 kcal Electronic energy + Delta-G solvation = -32778.096834 eV Core-core repulsion = 28698.073935 eV Total energy + Delta-G solvation = -4080.022900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.08361 -40.28368 -37.93277 -37.32951 -36.24450 -33.96691 -33.75358 -32.28181 -30.73284 -30.44145 -30.12312 -28.98776 -27.13176 -25.93561 -24.44981 -23.12064 -23.03519 -22.28044 -21.65468 -21.11798 -19.24801 -18.93408 -18.10942 -17.28586 -16.64939 -16.20673 -15.94408 -15.46445 -15.33630 -14.80836 -14.60802 -14.41923 -14.25385 -13.97634 -13.91795 -13.68295 -13.50642 -13.28444 -13.00297 -12.96729 -12.78650 -12.68856 -12.36224 -12.25041 -12.02751 -11.56167 -11.46337 -11.37730 -11.24578 -11.20422 -10.91944 -10.80826 -10.57580 -10.43684 -10.31007 -9.51553 -9.20301 -9.11425 -8.97909 -8.85136 -8.59135 -8.54658 -7.64667 -7.31197 -6.78393 -4.65036 1.21986 1.37156 1.46715 1.51654 2.86901 3.09674 3.19901 3.32950 3.49565 3.57182 3.88064 4.09914 4.16384 4.51172 4.60286 4.77238 4.84086 4.89226 4.99609 5.10241 5.11978 5.19050 5.24911 5.33943 5.35597 5.45705 5.54118 5.56565 5.65011 5.67966 5.76122 5.79074 5.88081 5.90651 5.93790 6.01720 6.07762 6.20241 6.28367 6.35268 6.45018 6.49688 6.58075 6.59799 6.66204 6.82139 6.83830 6.93783 7.12574 7.20043 7.31369 7.35945 7.65288 7.86314 8.18969 8.58665 8.87579 9.01319 10.21196 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.004191 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.207862 B = 6680.033952 C = 8355.831534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.104 3.896 3 Si 0.906 3.094 4 H -0.245 1.245 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.380 4.380 8 H 0.120 0.880 9 N -0.367 5.367 10 C 0.364 3.636 11 C 0.129 3.871 12 N -0.476 5.476 13 C 0.064 3.936 14 C -0.165 4.165 15 C -0.075 4.075 16 C -0.121 4.121 17 C -0.106 4.106 18 C -0.140 4.140 19 C -0.110 4.110 20 C -0.119 4.119 21 C 0.122 3.878 22 N -0.531 5.531 23 C 0.166 3.834 24 C -0.124 4.124 25 C -0.087 4.087 26 C -0.169 4.169 27 C -0.041 4.041 28 C -0.212 4.212 29 C 0.492 3.508 30 O -0.511 6.511 31 H 0.286 0.714 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.927 -9.125 6.033 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.113 4.113 3 Si 0.735 3.265 4 H -0.171 1.171 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.506 4.506 8 H 0.137 0.863 9 N -0.072 5.072 10 C 0.101 3.899 11 C 0.002 3.998 12 N -0.191 5.191 13 C -0.063 4.063 14 C -0.204 4.204 15 C -0.112 4.112 16 C -0.124 4.124 17 C -0.125 4.125 18 C -0.159 4.159 19 C -0.129 4.129 20 C -0.139 4.139 21 C 0.025 3.975 22 N -0.257 5.257 23 C 0.051 3.949 24 C -0.144 4.144 25 C -0.106 4.106 26 C -0.188 4.188 27 C -0.060 4.060 28 C -0.220 4.220 29 C 0.289 3.711 30 O -0.390 6.390 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.164 -8.710 5.971 14.657 hybrid contribution -0.875 0.853 -0.582 1.353 sum 9.289 -7.857 5.389 13.306 Atomic orbital electron populations 1.69612 1.06880 1.29773 1.38969 1.25330 0.95198 0.99919 0.90820 0.86346 0.79293 0.81508 0.79338 1.17074 1.22196 1.20067 1.19307 0.81793 0.97697 1.51837 0.86256 1.42465 1.09774 1.34104 1.20872 1.22734 0.85260 0.91478 0.90435 1.20916 0.90536 0.94755 0.93560 1.58172 1.38614 1.21650 1.00660 1.22217 0.96873 0.89462 0.97768 1.22290 1.01040 1.00024 0.97068 1.20493 1.02160 0.96071 0.92501 1.19954 1.01697 0.95418 0.95327 1.20904 1.00306 0.99243 0.92038 1.20972 1.02342 0.93870 0.98731 1.20949 0.99322 0.96128 0.96470 1.21129 1.01122 1.00010 0.91606 1.18543 0.96218 0.92338 0.90377 1.68538 1.08387 1.28755 1.20044 1.18861 0.93857 0.91649 0.90575 1.20652 0.92869 1.02033 0.98859 1.21051 0.99281 0.95724 0.94579 1.20898 0.93430 1.02736 1.01750 1.20928 0.94903 0.95609 0.94600 1.20727 0.93495 1.05612 1.02133 1.18599 0.88311 0.83310 0.80849 1.90678 1.57396 1.40467 1.50425 0.90391 0.87241 0.90710 0.88729 0.90435 0.90759 0.91201 0.90788 0.90860 0.86577 0.86522 0.86198 0.85549 0.85298 0.86145 0.86257 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.53 13.95 55.50 0.77 -21.75 16 2 C 0.10 2.80 4.94 -17.49 -0.09 2.71 16 3 Si 0.91 22.99 24.57 -169.99 -4.18 18.81 16 4 H -0.25 -6.53 6.26 56.52 0.35 -6.18 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -7.08 7.10 56.52 0.40 -6.68 16 7 C -0.38 -9.78 8.74 -14.88 -0.13 -9.91 16 8 H 0.12 3.05 7.11 -52.49 -0.37 2.68 16 9 N -0.37 -8.86 2.33 -59.56 -0.14 -9.00 16 10 C 0.36 7.58 6.98 -154.87 -1.08 6.50 16 11 C 0.13 2.29 4.01 -4.98 -0.02 2.27 16 12 N -0.48 -7.45 4.03 -172.65 -0.70 -8.14 16 13 C 0.06 0.91 5.40 -3.89 -0.02 0.89 16 14 C -0.17 -2.04 6.03 -26.52 -0.16 -2.20 16 15 C -0.08 -0.84 5.81 -27.82 -0.16 -1.00 16 16 C -0.12 -1.57 5.74 -104.39 -0.60 -2.17 16 17 C -0.11 -1.23 9.63 -39.51 -0.38 -1.61 16 18 C -0.14 -1.58 10.05 -39.62 -0.40 -1.97 16 19 C -0.11 -1.32 10.04 -39.71 -0.40 -1.72 16 20 C -0.12 -1.66 9.18 -39.22 -0.36 -2.02 16 21 C 0.12 1.78 5.11 -83.85 -0.43 1.35 16 22 N -0.53 -10.58 7.82 -8.10 -0.06 -10.64 16 23 C 0.17 3.32 6.63 -84.50 -0.56 2.76 16 24 C -0.12 -2.03 10.03 -39.25 -0.39 -2.43 16 25 C -0.09 -1.24 10.00 -39.54 -0.40 -1.63 16 26 C -0.17 -2.58 10.02 -39.51 -0.40 -2.98 16 27 C -0.04 -0.77 9.68 -39.32 -0.38 -1.16 16 28 C -0.21 -4.64 5.89 -104.78 -0.62 -5.25 16 29 C 0.49 12.34 5.80 -12.47 -0.07 12.27 16 30 O -0.51 -14.06 12.02 5.17 0.06 -14.00 16 31 H 0.29 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.11 1.98 7.46 -51.93 -0.39 1.59 16 33 H 0.08 1.33 5.42 -51.93 -0.28 1.04 16 34 H 0.09 1.49 6.17 -51.93 -0.32 1.17 16 35 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.97 6.32 -51.93 -0.33 0.64 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 45 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 47 H 0.13 2.35 7.83 -52.48 -0.41 1.94 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -30.00 372.45 -11.60 -41.60 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.93 Total: 4.81 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -7.04 Total: -7.29 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.12 Total: -49.54 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.06 Total: -14.00 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.18 Total: 18.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.00 -11.60 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009113615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.150 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds