Wall clock time and date at job start Tue Mar 31 2020 05:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31256 * 1 3 3 Si 1.86798 * 120.00215 * 2 1 4 4 H 1.48504 * 109.46893 * 275.16886 * 3 2 1 5 5 H 1.48499 * 109.47212 * 35.16568 * 3 2 1 6 6 H 1.48498 * 109.47278 * 155.17182 * 3 2 1 7 7 C 1.39078 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 343.08069 * 7 2 1 9 9 N 1.37108 * 119.99498 * 163.07731 * 7 2 1 10 10 C 1.36236 * 119.71321 * 137.53116 * 9 7 2 11 11 C 1.50696 * 118.34839 * 0.02562 * 10 9 7 12 12 N 1.46902 * 109.46878 * 174.54508 * 11 10 9 13 13 C 1.46426 * 111.00131 * 290.32409 * 12 11 10 14 14 C 1.53379 * 108.65665 * 287.85813 * 13 12 11 15 15 C 1.53035 * 107.94150 * 291.78662 * 14 13 12 16 16 C 1.50797 * 109.66578 * 47.29570 * 15 14 13 17 17 C 1.38613 * 118.12676 * 164.70001 * 16 15 14 18 18 C 1.38056 * 120.48877 * 179.36338 * 17 16 15 19 19 C 1.38319 * 119.88686 * 359.97438 * 18 17 16 20 20 C 1.37808 * 119.95196 * 0.13377 * 19 18 17 21 21 C 1.38372 * 122.00857 * 344.28973 * 16 15 14 22 22 N 1.29836 * 123.30105 * 180.02562 * 10 9 7 23 23 C 1.35635 * 121.62175 * 359.97438 * 22 10 9 24 24 C 1.39634 * 121.61702 * 180.02562 * 23 22 10 25 25 C 1.37718 * 119.68852 * 179.97438 * 24 23 22 26 26 C 1.38875 * 120.82880 * 0.02562 * 25 24 23 27 27 C 1.37792 * 120.56662 * 359.97438 * 26 25 24 28 28 C 1.39366 * 119.52302 * 0.02562 * 27 26 25 29 29 C 1.35340 * 119.71906 * 317.52541 * 9 7 2 30 30 O 1.21720 * 121.28784 * 359.97438 * 29 9 7 31 31 H 0.96999 * 119.99950 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47088 * 294.54184 * 11 10 9 33 33 H 1.08996 * 109.47316 * 54.54549 * 11 10 9 34 34 H 1.09003 * 109.60227 * 47.60257 * 13 12 11 35 35 H 1.08998 * 109.61124 * 168.10398 * 13 12 11 36 36 H 1.09002 * 109.77281 * 172.16954 * 14 13 12 37 37 H 1.08996 * 109.80302 * 51.42275 * 14 13 12 38 38 H 1.09005 * 109.43913 * 287.23119 * 15 14 13 39 39 H 1.09000 * 109.40855 * 167.33421 * 15 14 13 40 40 H 1.08001 * 119.75752 * 359.30710 * 17 16 15 41 41 H 1.07994 * 120.06099 * 180.02562 * 18 17 16 42 42 H 1.07996 * 120.02549 * 180.15880 * 19 18 17 43 43 H 1.07992 * 119.79127 * 179.97438 * 20 19 18 44 44 H 1.07994 * 120.16134 * 0.02562 * 24 23 22 45 45 H 1.08001 * 119.58198 * 180.28241 * 25 24 23 46 46 H 1.07998 * 119.71568 * 180.02562 * 26 25 24 47 47 H 1.08007 * 120.23669 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.3849 2.1094 -1.3944 5 1 1.5030 2.6187 0.8064 6 1 3.5945 1.4110 0.5879 7 6 2.0079 -1.2045 0.0005 8 1 1.5029 -2.1194 0.2731 9 7 3.3344 -1.2303 -0.3451 10 6 4.2055 -1.9897 0.3763 11 6 3.6695 -2.7822 1.5406 12 7 4.7389 -3.6239 2.0938 13 6 5.0897 -4.7027 1.1680 14 6 3.9529 -5.7323 1.1611 15 6 3.9327 -6.4213 2.5275 16 6 4.0125 -5.3847 3.6198 17 6 3.6863 -5.7694 4.9109 18 6 3.7551 -4.8634 5.9502 19 6 4.1527 -3.5615 5.7046 20 6 4.4764 -3.1712 4.4232 21 6 4.4056 -4.0822 3.3675 22 7 5.4743 -2.0650 0.1112 23 6 6.0270 -1.3804 -0.9210 24 6 7.3914 -1.4618 -1.2064 25 6 7.9106 -0.7499 -2.2648 26 6 7.0939 0.0500 -3.0534 27 6 5.7445 0.1467 -2.7919 28 6 5.1989 -0.5655 -1.7255 29 6 3.7672 -0.5013 -1.4000 30 8 3.0003 0.1812 -2.0540 31 1 -0.4850 0.8400 -0.0004 32 1 3.3099 -2.0992 2.3102 33 1 2.8480 -3.4139 1.2028 34 1 5.2206 -4.2959 0.1652 35 1 6.0134 -5.1798 1.4953 36 1 4.1287 -6.4705 0.3786 37 1 3.0011 -5.2305 0.9872 38 1 4.7844 -7.0971 2.6056 39 1 3.0083 -6.9891 2.6332 40 1 3.3751 -6.7852 5.1050 41 1 3.4998 -5.1707 6.9536 42 1 4.2098 -2.8516 6.5164 43 1 4.7861 -2.1540 4.2342 44 1 8.0365 -2.0808 -0.6006 45 1 8.9654 -0.8178 -2.4868 46 1 7.5200 0.6002 -3.8793 47 1 5.1143 0.7701 -3.4089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009113615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:13 Heat of formation + Delta-G solvation = 51.029555 kcal Electronic energy + Delta-G solvation = -32778.769701 eV Core-core repulsion = 28698.073935 eV Total energy + Delta-G solvation = -4080.695766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.71187 -41.42266 -39.47740 -38.79760 -37.55828 -35.72473 -34.81332 -34.15717 -32.19685 -31.72589 -31.13840 -30.18365 -28.47602 -27.77085 -25.59650 -24.74090 -24.11275 -23.53944 -22.91042 -22.50596 -20.75381 -20.31782 -19.73862 -18.86988 -17.96177 -17.72006 -17.14732 -16.99382 -16.58953 -16.35088 -16.05583 -15.84151 -15.62732 -15.28066 -15.14877 -15.01293 -14.96383 -14.77769 -14.65115 -14.37441 -14.18636 -13.80730 -13.76578 -13.49659 -13.18162 -13.09318 -12.92793 -12.72984 -12.55390 -12.49515 -12.34385 -12.18701 -12.16172 -11.68064 -11.53525 -11.26745 -11.02644 -10.74619 -10.67859 -10.21396 -10.02172 -9.53356 -8.94526 -8.81158 -8.71840 -6.67822 -0.30580 -0.12523 0.48310 0.55463 1.03295 1.12478 1.25599 1.31070 1.87537 1.91284 2.14024 2.63762 2.78602 3.00611 3.03325 3.15850 3.54426 3.76362 3.87546 3.91885 3.96370 4.02388 4.13035 4.17508 4.22263 4.31879 4.37405 4.41338 4.46988 4.49653 4.59478 4.64882 4.75861 4.79920 4.86683 4.97837 5.02993 5.04205 5.08027 5.17098 5.25117 5.27518 5.31786 5.45164 5.47064 5.50399 5.52789 5.61753 5.71983 5.86252 5.92699 6.05189 6.11905 6.27066 6.57691 6.64934 7.11518 7.19369 8.22899 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.004191 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.207862 B = 6680.033952 C = 8355.831534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.074 3.926 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.287 1.287 7 C -0.383 4.383 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.362 3.638 11 C 0.140 3.860 12 N -0.480 5.480 13 C 0.066 3.934 14 C -0.161 4.161 15 C -0.070 4.070 16 C -0.128 4.128 17 C -0.109 4.109 18 C -0.136 4.136 19 C -0.115 4.115 20 C -0.138 4.138 21 C 0.095 3.905 22 N -0.512 5.512 23 C 0.136 3.864 24 C -0.117 4.117 25 C -0.065 4.065 26 C -0.139 4.139 27 C -0.069 4.069 28 C -0.236 4.236 29 C 0.473 3.527 30 O -0.555 6.555 31 H 0.289 0.711 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.113 0.887 44 H 0.155 0.845 45 H 0.176 0.824 46 H 0.163 0.837 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.892 -11.008 6.763 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.138 4.138 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.213 1.213 7 C -0.510 4.510 8 H 0.127 0.873 9 N -0.092 5.092 10 C 0.097 3.903 11 C 0.013 3.987 12 N -0.196 5.196 13 C -0.061 4.061 14 C -0.200 4.200 15 C -0.107 4.107 16 C -0.131 4.131 17 C -0.127 4.127 18 C -0.154 4.154 19 C -0.133 4.133 20 C -0.158 4.158 21 C -0.001 4.001 22 N -0.236 5.236 23 C 0.022 3.978 24 C -0.136 4.136 25 C -0.085 4.085 26 C -0.157 4.157 27 C -0.089 4.089 28 C -0.242 4.242 29 C 0.272 3.728 30 O -0.438 6.438 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.131 0.869 44 H 0.173 0.827 45 H 0.194 0.806 46 H 0.181 0.819 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.192 -10.618 6.732 18.960 hybrid contribution -1.697 1.335 -0.877 2.330 sum 12.496 -9.283 5.854 16.631 Atomic orbital electron populations 1.69638 1.07289 1.30151 1.42034 1.25701 0.95566 1.01330 0.91191 0.85765 0.78277 0.80703 0.77779 1.19702 1.20390 1.21303 1.19173 0.82923 0.97043 1.51837 0.87308 1.42479 1.09603 1.35403 1.21758 1.23254 0.85514 0.90458 0.91038 1.20749 0.91156 0.94614 0.92205 1.58170 1.37715 1.22272 1.01410 1.22186 0.98079 0.89476 0.96349 1.22236 0.99104 0.99851 0.98820 1.20525 1.03713 0.95722 0.90762 1.20224 1.01147 0.95008 0.96706 1.21261 0.99421 1.00664 0.91364 1.21368 1.00710 0.93219 1.00138 1.21222 0.98786 0.97239 0.96090 1.21210 1.02253 0.99580 0.92731 1.18671 0.98332 0.93484 0.89645 1.68625 1.07710 1.27582 1.19681 1.19360 0.95543 0.92191 0.90678 1.21078 0.91097 1.01949 0.99524 1.21678 1.01693 0.92850 0.92233 1.21452 0.91468 1.01014 1.01815 1.21102 0.96946 0.96358 0.94471 1.20867 0.91960 1.07459 1.03945 1.19252 0.89818 0.83024 0.80702 1.90617 1.58655 1.42556 1.51969 0.90101 0.88327 0.91330 0.90847 0.89192 0.88988 0.93418 0.88830 0.89427 0.83850 0.83607 0.84306 0.86887 0.82721 0.80642 0.81943 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.80 13.95 21.68 0.30 -49.50 16 2 C 0.07 4.26 4.94 84.98 0.42 4.68 16 3 Si 0.95 50.26 24.57 68.60 1.69 51.95 16 4 H -0.27 -15.30 6.26 99.48 0.62 -14.68 16 5 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.29 -15.48 7.10 99.48 0.71 -14.77 16 7 C -0.38 -21.15 8.74 84.07 0.73 -20.42 16 8 H 0.11 6.04 7.11 -2.91 -0.02 6.02 16 9 N -0.39 -19.77 2.33 -460.25 -1.07 -20.84 16 10 C 0.36 15.79 6.98 137.93 0.96 16.75 16 11 C 0.14 5.28 4.01 85.56 0.34 5.62 16 12 N -0.48 -15.31 4.03 -700.15 -2.82 -18.13 16 13 C 0.07 1.85 5.40 86.52 0.47 2.32 16 14 C -0.16 -3.87 6.03 30.73 0.19 -3.68 16 15 C -0.07 -1.41 5.81 29.89 0.17 -1.24 16 16 C -0.13 -3.12 5.74 -19.71 -0.11 -3.23 16 17 C -0.11 -2.21 9.63 22.32 0.21 -2.00 16 18 C -0.14 -2.68 10.05 22.25 0.22 -2.46 16 19 C -0.11 -2.61 10.04 22.19 0.22 -2.39 16 20 C -0.14 -3.89 9.18 22.50 0.21 -3.68 16 21 C 0.09 2.76 5.11 38.30 0.20 2.95 16 22 N -0.51 -20.59 7.82 -179.53 -1.40 -21.99 16 23 C 0.14 5.33 6.63 39.65 0.26 5.59 16 24 C -0.12 -3.38 10.03 22.48 0.23 -3.15 16 25 C -0.07 -1.48 10.00 22.30 0.22 -1.26 16 26 C -0.14 -3.63 10.02 22.32 0.22 -3.40 16 27 C -0.07 -2.56 9.68 22.44 0.22 -2.34 16 28 C -0.24 -10.47 5.89 -19.97 -0.12 -10.58 16 29 C 0.47 25.09 5.80 86.44 0.50 25.59 16 30 O -0.56 -32.66 12.02 -4.41 -0.05 -32.71 16 31 H 0.29 15.59 8.31 -92.71 -0.77 14.82 16 32 H 0.10 3.88 7.46 -2.39 -0.02 3.86 16 33 H 0.07 2.64 5.42 -2.39 -0.01 2.63 16 34 H 0.07 2.34 6.17 -2.39 -0.01 2.32 16 35 H 0.09 2.26 8.11 -2.39 -0.02 2.24 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.36 6.32 -2.39 -0.02 1.34 16 38 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 41 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 42 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 43 H 0.11 3.36 8.06 -2.91 -0.02 3.34 16 44 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 45 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 46 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 47 H 0.12 4.48 7.83 -2.91 -0.02 4.46 16 Total: -1.00 -71.91 372.45 3.33 -68.58 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.92 Total: 18.99 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.77 Total: 3.65 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -5.00 Total: -110.46 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.05 Total: -32.71 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 1.69 Total: 51.95 kcal Total: -71.91 3.33 -68.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009113615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.612 kcal (2) G-P(sol) polarization free energy of solvation -71.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds